Wall clock time and date at job start Tue Mar 31 2020 12:11:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.42901 * 113.99816 * 2 1
4 4 C 1.53003 * 109.47097 * 180.02562 * 3 2 1
5 5 S 1.81400 * 109.47113 * 180.02562 * 4 3 2
6 6 O 1.42100 * 110.54561 * 68.37618 * 5 4 3
7 7 O 1.42102 * 110.54592 * 291.62684 * 5 4 3
8 8 N 1.65601 * 104.45201 * 180.02562 * 5 4 3
9 9 C 1.38765 * 119.99858 * 60.08455 * 8 5 4
10 10 C 1.38747 * 120.28403 * 35.48568 * 9 8 5
11 11 C 1.38156 * 120.03870 * 179.97438 * 10 9 8
12 12 C 1.39015 * 120.60978 * 359.97438 * 11 10 9
13 13 Cl 1.73601 * 119.70975 * 180.02562 * 12 11 10
14 14 C 1.36528 * 120.57680 * 359.79060 * 12 11 10
15 15 C 1.40721 * 119.93724 * 0.44351 * 14 12 11
16 16 C 1.41042 * 120.29786 * 179.81211 * 15 14 12
17 17 H 1.08010 * 119.99942 * 209.13341 * 16 15 14
18 18 C 1.39921 * 120.00374 * 29.40536 * 16 15 14
19 19 N 1.30884 * 119.99485 * 10.34588 * 18 16 15
20 20 Si 1.86793 * 120.00454 * 190.34452 * 18 16 15
21 21 H 1.48499 * 109.47139 * 0.02562 * 20 18 16
22 22 H 1.48498 * 109.47223 * 120.00217 * 20 18 16
23 23 H 1.48501 * 109.47471 * 240.00274 * 20 18 16
24 24 H 1.09002 * 109.46971 * 299.99419 * 1 2 3
25 25 H 1.09002 * 109.47696 * 59.99509 * 1 2 3
26 26 H 1.08999 * 109.47033 * 179.97438 * 1 2 3
27 27 H 1.09003 * 109.46974 * 60.00128 * 3 2 1
28 28 H 1.08997 * 109.47253 * 300.00456 * 3 2 1
29 29 H 1.08999 * 109.46658 * 60.00726 * 4 3 2
30 30 H 1.08997 * 109.47392 * 300.00311 * 4 3 2
31 31 H 0.96993 * 120.00160 * 240.08853 * 8 5 4
32 32 H 1.08002 * 119.98067 * 359.97438 * 10 9 8
33 33 H 1.07996 * 119.69311 * 180.02562 * 11 10 9
34 34 H 1.07997 * 120.03395 * 180.25908 * 14 12 11
35 35 H 0.97001 * 119.99937 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 16 4.2732 2.8419 0.0001
6 8 4.0285 3.4961 1.2376
7 8 4.0275 3.4977 -1.2363
8 7 5.9062 2.5673 -0.0014
9 6 6.4902 1.8620 -1.0440
10 6 6.0105 2.0017 -2.3384
11 6 6.5961 1.2975 -3.3728
12 6 7.6675 0.4453 -3.1315
13 17 8.3861 -0.4277 -4.4487
14 6 8.1626 0.2926 -1.8683
15 6 7.5810 0.9946 -0.7964
16 6 8.0839 0.8395 0.5122
17 1 7.4267 0.9592 1.3610
18 6 9.4353 0.5362 0.7110
19 7 10.2736 0.5951 -0.2924
20 14 10.0429 0.0473 2.4083
21 1 8.9054 0.0559 3.3628
22 1 10.6295 -1.3157 2.3505
23 1 11.0768 1.0123 2.8610
24 1 -0.3633 0.5138 0.8901
25 1 -0.3634 0.5139 -0.8899
26 1 -0.3633 -1.0277 -0.0005
27 1 1.6885 1.8464 0.8900
28 1 1.6884 1.8464 -0.8899
29 1 3.8566 0.6441 -0.8909
30 1 3.8574 0.6436 0.8890
31 1 6.4545 2.8993 0.7265
32 1 5.1788 2.6614 -2.5375
33 1 6.2185 1.4108 -4.3782
34 1 8.9980 -0.3686 -1.6915
35 1 11.2105 0.3852 -0.1545
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000451058900.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:45
Heat of formation + Delta-G solvation = -127.278232 kcal
Electronic energy + Delta-G solvation = -22583.914359 eV
Core-core repulsion = 18926.984700 eV
Total energy + Delta-G solvation = -3656.929659 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.048 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.04365 -38.98596 -38.25990 -37.29744 -37.13608 -35.74536 -35.19677 -32.97793
-31.63500 -29.68050 -27.45874 -27.15474 -24.51888 -23.34518 -22.60758 -20.32785
-19.38088 -18.77737 -18.47567 -17.76857 -17.38137 -17.07176 -16.81250 -16.34350
-16.24227 -15.89218 -15.50705 -14.73690 -14.60812 -14.50613 -14.25255 -13.77111
-13.33058 -13.29425 -13.21667 -13.16343 -12.98592 -12.78052 -12.73508 -12.70829
-12.42613 -12.20657 -11.99339 -11.89786 -11.79852 -11.35758 -11.12839 -10.93235
-10.76239 -9.46678 -8.90997 -8.57247 -6.38844 -0.87776 0.74862 0.91016
1.43922 1.48946 1.56024 1.56501 1.65686 2.20734 2.46883 2.66926
2.97928 3.17658 3.51492 3.55986 3.74854 4.10529 4.32377 4.42003
4.48523 4.53645 4.56528 4.71442 4.79800 4.84433 5.01523 5.09844
5.28987 5.42407 5.56314 5.88267 5.99098 6.06411 6.09820 6.28210
6.53711 6.84954 6.86842 8.31379
Molecular weight = 319.05amu
Principal moments of inertia in cm(-1)
A = 0.010512 B = 0.005178 C = 0.004165
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2663.070291 B = 5406.692288 C = 6720.884972
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.405 6.405
3 C 0.067 3.933
4 C -0.623 4.623
5 S 2.631 3.369
6 O -0.981 6.981
7 O -0.971 6.971
8 N -1.025 6.025
9 C 0.029 3.971
10 C -0.133 4.133
11 C -0.206 4.206
12 C -0.023 4.023
13 Cl -0.104 7.104
14 C -0.153 4.153
15 C 0.088 3.912
16 C -0.475 4.475
17 H 0.093 0.907
18 C 0.036 3.964
19 N -0.820 5.820
20 Si 0.978 3.022
21 H -0.253 1.253
22 H -0.270 1.270
23 H -0.271 1.271
24 H 0.058 0.942
25 H 0.056 0.944
26 H 0.102 0.898
27 H 0.080 0.920
28 H 0.078 0.922
29 H 0.143 0.857
30 H 0.151 0.849
31 H 0.424 0.576
32 H 0.153 0.847
33 H 0.128 0.872
34 H 0.118 0.882
35 H 0.289 0.711
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.447 -1.007 1.806 11.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.325 6.325
3 C -0.011 4.011
4 C -0.753 4.753
5 S 2.726 3.274
6 O -0.971 6.971
7 O -0.962 6.962
8 N -0.776 5.776
9 C -0.069 4.069
10 C -0.155 4.155
11 C -0.227 4.227
12 C -0.050 4.050
13 Cl -0.076 7.076
14 C -0.174 4.174
15 C 0.082 3.918
16 C -0.505 4.505
17 H 0.111 0.889
18 C -0.180 4.180
19 N -0.446 5.446
20 Si 0.799 3.201
21 H -0.177 1.177
22 H -0.195 1.195
23 H -0.196 1.196
24 H 0.076 0.924
25 H 0.075 0.925
26 H 0.120 0.880
27 H 0.098 0.902
28 H 0.096 0.904
29 H 0.161 0.839
30 H 0.169 0.831
31 H 0.262 0.738
32 H 0.170 0.830
33 H 0.146 0.854
34 H 0.136 0.864
35 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -11.602 -0.433 1.560 11.715
hybrid contribution 1.057 -0.727 0.642 1.435
sum -10.545 -1.160 2.202 10.835
Atomic orbital electron populations
1.23095 0.78845 1.04494 1.01583 1.87920 1.22033 1.26813 1.95685
1.22215 0.88984 0.86905 1.02974 1.30594 1.05853 1.24833 1.13996
1.04491 0.72778 0.76884 0.73274 1.93545 1.84373 1.73550 1.45669
1.93496 1.84600 1.72455 1.45613 1.52370 1.25327 1.67989 1.31907
1.17400 1.03755 0.99192 0.86525 1.21493 1.02615 1.00846 0.90544
1.20413 0.99589 1.03339 0.99325 1.20653 0.97443 0.98693 0.88250
1.98260 1.83767 1.76321 1.49220 1.20914 1.02782 1.03056 0.90685
1.17668 0.91506 0.88730 0.93927 1.19708 0.94806 1.42809 0.93166
0.88885 1.26702 0.96805 0.92062 1.02401 1.69854 1.05389 1.34914
1.34446 0.85193 0.78951 0.78476 0.77439 1.17651 1.19498 1.19597
0.92384 0.92536 0.87981 0.90237 0.90404 0.83869 0.83099 0.73838
0.82978 0.85410 0.86422 0.90035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.25 11.01 113.37 1.25 1.50 16
2 O -0.41 -9.92 10.70 -148.98 -1.59 -11.51 16
3 C 0.07 1.55 5.95 71.98 0.43 1.98 16
4 C -0.62 -16.44 6.26 71.98 0.45 -15.98 16
5 S 2.63 81.55 5.23 -56.49 -0.30 81.26 16
6 O -0.98 -33.37 18.08 -127.65 -2.31 -35.67 16
7 O -0.97 -33.91 15.04 -127.65 -1.92 -35.83 16
8 N -1.03 -36.85 5.26 -50.37 -0.27 -37.12 16
9 C 0.03 1.21 6.15 38.98 0.24 1.45 16
10 C -0.13 -5.39 9.24 22.37 0.21 -5.18 16
11 C -0.21 -8.37 9.81 22.44 0.22 -8.15 16
12 C -0.02 -1.01 6.27 22.06 0.14 -0.87 16
13 Cl -0.10 -3.99 28.93 -2.72 -0.08 -4.07 16
14 C -0.15 -7.34 8.35 22.48 0.19 -7.15 16
15 C 0.09 4.13 5.56 -21.17 -0.12 4.01 16
16 C -0.48 -21.97 8.34 23.37 0.19 -21.78 16
17 H 0.09 3.97 7.46 -2.91 -0.02 3.95 16
18 C 0.04 1.64 5.26 85.24 0.45 2.08 16
19 N -0.82 -39.41 10.86 21.83 0.24 -39.18 16
20 Si 0.98 34.91 29.57 68.60 2.03 36.93 16
21 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16
22 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16
23 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16
24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
26 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16
27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
28 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16
29 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16
30 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16
31 H 0.42 14.71 8.14 -96.75 -0.79 13.92 16
32 H 0.15 5.77 5.17 -2.91 -0.02 5.76 16
33 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16
34 H 0.12 5.99 6.25 -2.91 -0.02 5.97 16
35 H 0.29 12.72 8.30 -92.71 -0.77 11.95 16
Total: -1.00 -59.18 327.55 -0.20 -59.38
By element:
Atomic # 1 Polarization: 33.57 SS G_CDS: 0.35 Total: 33.92 kcal
Atomic # 6 Polarization: -51.75 SS G_CDS: 3.64 Total: -48.10 kcal
Atomic # 7 Polarization: -76.27 SS G_CDS: -0.03 Total: -76.30 kcal
Atomic # 8 Polarization: -77.20 SS G_CDS: -5.82 Total: -83.02 kcal
Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.93 kcal
Atomic # 16 Polarization: 81.55 SS G_CDS: -0.30 Total: 81.26 kcal
Atomic # 17 Polarization: -3.99 SS G_CDS: -0.08 Total: -4.07 kcal
Total: -59.18 -0.20 -59.38 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451058900.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.901 kcal
(2) G-P(sol) polarization free energy of solvation -59.176 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.077 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.278 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds