Wall clock time and date at job start Tue Mar 31 2020 12:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47087 * 239.99905 * 3 2 1 5 5 H 1.48495 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46786 * 120.00064 * 3 2 1 7 7 C 1.37881 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99501 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00134 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46710 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99802 * 90.00567 * 10 9 7 12 12 C 1.52990 * 109.47456 * 89.99507 * 11 10 9 13 13 F 1.39906 * 109.47171 * 59.99983 * 12 11 10 14 14 F 1.39901 * 109.47470 * 179.97438 * 12 11 10 15 15 F 1.39894 * 109.47499 * 299.99819 * 12 11 10 16 16 C 1.34771 * 120.00184 * 269.99907 * 10 9 7 17 17 O 1.21763 * 120.00063 * 0.02562 * 16 10 9 18 18 C 1.41656 * 120.00478 * 180.02562 * 16 10 9 19 19 C 1.35248 * 120.00385 * 173.19032 * 18 16 10 20 20 C 1.46689 * 119.99911 * 349.11523 * 19 18 16 21 21 C 1.44531 * 123.49675 * 317.13806 * 20 19 18 22 22 C 1.32748 * 113.08690 * 179.83821 * 21 20 19 23 23 S 1.75487 * 110.63956 * 0.41716 * 22 21 20 24 24 C 1.36296 * 123.50262 * 137.43967 * 20 19 18 25 25 H 0.97002 * 119.99642 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46873 * 60.00213 * 9 7 2 27 27 H 1.08997 * 109.46807 * 299.99931 * 9 7 2 28 28 H 1.09006 * 109.46621 * 209.99769 * 11 10 9 29 29 H 1.09000 * 109.47064 * 329.99184 * 11 10 9 30 30 H 1.08007 * 119.99433 * 353.18740 * 18 16 10 31 31 H 1.07998 * 119.99612 * 169.11065 * 19 18 16 32 32 H 1.08002 * 123.45629 * 0.04718 * 21 20 19 33 33 H 1.07997 * 124.67566 * 180.17106 * 22 21 20 34 34 H 1.07996 * 124.59762 * 359.96133 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6788 -4.1695 1.2682 12 6 1.7481 -5.3006 1.7099 13 9 1.7381 -6.3039 0.7349 14 9 2.2029 -5.8327 2.9212 15 9 0.4525 -4.8001 1.8772 16 6 2.6408 -4.1249 -1.1677 17 8 2.2456 -3.6619 -2.2222 18 6 3.5610 -5.2020 -1.1677 19 6 3.8948 -5.8062 -2.3308 20 6 3.1368 -5.5151 -3.5525 21 6 1.6955 -5.4152 -3.5922 22 6 1.2259 -5.1411 -4.8032 23 16 2.5389 -5.0040 -5.9594 24 6 3.7182 -5.3167 -4.7692 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 3.6883 -4.5596 1.1379 29 1 2.6866 -3.3879 2.0279 30 1 3.9959 -5.5406 -0.2389 31 1 4.7195 -6.5029 -2.3600 32 1 1.0655 -5.5464 -2.7249 33 1 0.1799 -5.0230 -5.0443 34 1 4.7816 -5.3527 -4.9539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492088440.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:58 Heat of formation + Delta-G solvation = -119.962610 kcal Electronic energy + Delta-G solvation = -25148.795960 eV Core-core repulsion = 20952.759640 eV Total energy + Delta-G solvation = -4196.036321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.059 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.81630 -47.37293 -47.25308 -39.73651 -37.24910 -35.15263 -33.06082 -32.42383 -29.41767 -29.07240 -27.23815 -24.55199 -23.28096 -22.91080 -21.49268 -19.37020 -18.49663 -18.29057 -18.04415 -17.48115 -16.86304 -16.72149 -16.09334 -15.50345 -14.74648 -14.33492 -14.15902 -14.12513 -13.92708 -13.74354 -13.65060 -13.44743 -13.41557 -12.91317 -12.81839 -12.56843 -12.42841 -12.10393 -12.01278 -11.87944 -11.74647 -11.25689 -11.00095 -10.63443 -10.51599 -10.23865 -9.79560 -9.54033 -9.15591 -8.56622 -8.48554 -7.90801 -7.51682 -6.10006 -4.15589 0.97524 1.69156 2.01523 2.36672 2.96275 3.21922 3.28439 3.33595 3.35699 3.57927 3.80580 4.21406 4.26534 4.40758 4.55863 4.92502 5.04252 5.12826 5.24064 5.26430 5.47770 5.59135 5.67710 5.81121 6.09831 6.22198 6.45714 6.60035 6.75499 6.96925 7.29161 7.37737 7.84744 8.11061 8.14397 8.78451 8.92237 9.49557 10.98148 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.009287 B = 0.005993 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.384660 B = 4671.307748 C = 6863.896645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.244 3.756 10 N -0.593 5.593 11 C 0.073 3.927 12 C 0.427 3.573 13 F -0.185 7.185 14 F -0.189 7.189 15 F -0.175 7.175 16 C 0.536 3.464 17 O -0.504 6.504 18 C -0.211 4.211 19 C -0.006 4.006 20 C -0.072 4.072 21 C -0.049 4.049 22 C -0.241 4.241 23 S 0.121 5.879 24 C -0.239 4.239 25 H 0.265 0.735 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.158 0.842 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -13.917 -2.224 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.125 3.875 10 N -0.324 5.324 11 C -0.055 4.055 12 C 0.371 3.629 13 F -0.166 7.166 14 F -0.171 7.171 15 F -0.157 7.157 16 C 0.327 3.673 17 O -0.382 6.382 18 C -0.233 4.233 19 C -0.028 4.028 20 C -0.087 4.087 21 C -0.078 4.078 22 C -0.375 4.375 23 S 0.385 5.615 24 C -0.375 4.375 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.131 0.869 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.176 0.824 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.544 -13.217 -4.360 15.380 hybrid contribution 0.333 0.599 2.014 2.127 sum 6.877 -12.619 -2.346 14.561 Atomic orbital electron populations 1.69924 1.05990 1.27253 1.49822 1.24921 0.94869 0.99206 0.94898 0.86556 0.79532 0.82691 0.78637 1.20179 1.21134 1.20200 1.21343 0.93296 0.90487 1.51877 0.92392 1.19451 0.87176 0.81677 0.99156 1.48201 1.46295 1.35324 1.02595 1.22629 0.96261 0.94831 0.91782 1.21715 0.82085 0.84466 0.74649 1.93168 1.96624 1.63902 1.62955 1.93152 1.88925 1.88013 1.47007 1.93216 1.40167 1.87056 1.95225 1.17108 0.82066 0.84061 0.84107 1.90879 1.57203 1.60882 1.29206 1.22317 1.02893 0.99357 0.98754 1.21936 0.95009 0.95385 0.90499 1.19238 0.92984 1.03878 0.92580 1.21010 0.92990 0.97081 0.96678 1.25119 1.02402 1.13066 0.96960 1.82649 0.95753 1.70962 1.12111 1.25228 1.03912 1.11061 0.97296 0.92555 0.93317 0.94345 0.86947 0.85448 0.85511 0.84921 0.84635 0.82435 0.82359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.24 6.10 4.95 -5.19 -0.03 6.08 16 10 N -0.59 -11.80 2.37 -178.47 -0.42 -12.22 16 11 C 0.07 1.09 5.26 -4.05 -0.02 1.07 16 12 C 0.43 6.35 3.29 37.15 0.12 6.47 16 13 F -0.18 -2.77 15.50 2.25 0.03 -2.73 16 14 F -0.19 -2.54 17.32 2.25 0.04 -2.50 16 15 F -0.18 -3.09 16.22 2.25 0.04 -3.05 16 16 C 0.54 10.51 6.47 -14.96 -0.10 10.41 16 17 O -0.50 -11.68 11.46 5.13 0.06 -11.63 16 18 C -0.21 -3.13 7.85 -39.34 -0.31 -3.43 16 19 C -0.01 -0.08 9.99 -37.24 -0.37 -0.46 16 20 C -0.07 -1.12 4.53 -104.71 -0.47 -1.59 16 21 C -0.05 -0.83 7.17 -38.98 -0.28 -1.11 16 22 C -0.24 -3.76 11.11 28.85 0.32 -3.44 16 23 S 0.12 1.65 23.02 -107.50 -2.47 -0.83 16 24 C -0.24 -3.36 10.82 30.03 0.33 -3.04 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 27 H 0.04 0.99 7.25 -51.93 -0.38 0.61 16 28 H 0.11 1.27 6.01 -51.93 -0.31 0.96 16 29 H 0.13 1.85 8.07 -51.93 -0.42 1.43 16 30 H 0.13 1.46 5.87 -52.48 -0.31 1.15 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.14 2.42 7.39 -52.49 -0.39 2.04 16 33 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -32.01 318.65 -6.45 -38.45 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.00 Total: 0.72 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.23 Total: -2.18 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.31 Total: -37.52 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.06 Total: -11.63 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 0.11 Total: -8.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.47 Total: -0.83 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.01 -6.45 -38.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492088440.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.510 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds