Wall clock time and date at job start Tue Mar 31 2020 12:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47087 * 239.99905 * 3 2 1 5 5 H 1.48495 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46786 * 120.00064 * 3 2 1 7 7 C 1.37881 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99501 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00134 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46710 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99802 * 90.00567 * 10 9 7 12 12 C 1.52990 * 109.47456 * 89.99507 * 11 10 9 13 13 F 1.39906 * 109.47171 * 59.99983 * 12 11 10 14 14 F 1.39901 * 109.47470 * 179.97438 * 12 11 10 15 15 F 1.39894 * 109.47499 * 299.99819 * 12 11 10 16 16 C 1.34771 * 120.00184 * 269.99907 * 10 9 7 17 17 O 1.21763 * 120.00063 * 0.02562 * 16 10 9 18 18 C 1.41656 * 120.00478 * 180.02562 * 16 10 9 19 19 C 1.35248 * 120.00385 * 173.19032 * 18 16 10 20 20 C 1.46689 * 119.99911 * 349.11523 * 19 18 16 21 21 C 1.44531 * 123.49675 * 317.13806 * 20 19 18 22 22 C 1.32748 * 113.08690 * 179.83821 * 21 20 19 23 23 S 1.75487 * 110.63956 * 0.41716 * 22 21 20 24 24 C 1.36296 * 123.50262 * 137.43967 * 20 19 18 25 25 H 0.97002 * 119.99642 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46873 * 60.00213 * 9 7 2 27 27 H 1.08997 * 109.46807 * 299.99931 * 9 7 2 28 28 H 1.09006 * 109.46621 * 209.99769 * 11 10 9 29 29 H 1.09000 * 109.47064 * 329.99184 * 11 10 9 30 30 H 1.08007 * 119.99433 * 353.18740 * 18 16 10 31 31 H 1.07998 * 119.99612 * 169.11065 * 19 18 16 32 32 H 1.08002 * 123.45629 * 0.04718 * 21 20 19 33 33 H 1.07997 * 124.67566 * 180.17106 * 22 21 20 34 34 H 1.07996 * 124.59762 * 359.96133 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6788 -4.1695 1.2682 12 6 1.7481 -5.3006 1.7099 13 9 1.7381 -6.3039 0.7349 14 9 2.2029 -5.8327 2.9212 15 9 0.4525 -4.8001 1.8772 16 6 2.6408 -4.1249 -1.1677 17 8 2.2456 -3.6619 -2.2222 18 6 3.5610 -5.2020 -1.1677 19 6 3.8948 -5.8062 -2.3308 20 6 3.1368 -5.5151 -3.5525 21 6 1.6955 -5.4152 -3.5922 22 6 1.2259 -5.1411 -4.8032 23 16 2.5389 -5.0040 -5.9594 24 6 3.7182 -5.3167 -4.7692 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 3.6883 -4.5596 1.1379 29 1 2.6866 -3.3879 2.0279 30 1 3.9959 -5.5406 -0.2389 31 1 4.7195 -6.5029 -2.3600 32 1 1.0655 -5.5464 -2.7249 33 1 0.1799 -5.0230 -5.0443 34 1 4.7816 -5.3527 -4.9539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492088440.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:57 Heat of formation + Delta-G solvation = -138.709590 kcal Electronic energy + Delta-G solvation = -25149.608891 eV Core-core repulsion = 20952.759640 eV Total energy + Delta-G solvation = -4196.849251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.059 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.03730 -48.54842 -48.53393 -41.16564 -38.50126 -36.69306 -34.92392 -33.80570 -30.95323 -30.28894 -28.92463 -26.11568 -24.63563 -24.30256 -22.91650 -20.70087 -19.74392 -19.52252 -19.30565 -18.84687 -18.47778 -18.02060 -17.66534 -17.02620 -16.37703 -15.73914 -15.56124 -15.41782 -15.32990 -14.97099 -14.85903 -14.69322 -14.65728 -14.41662 -14.17397 -13.92193 -13.75560 -13.51540 -13.37509 -13.16345 -13.10360 -12.99930 -12.76680 -12.53557 -12.19611 -11.78168 -11.66601 -10.73227 -10.64113 -10.59723 -9.87855 -9.45228 -8.67306 -8.22185 -6.36564 -0.15226 0.49201 0.88672 1.21633 1.37597 1.41428 1.48479 1.73089 2.00458 2.13149 2.39413 2.51111 2.97097 3.06811 3.09062 3.33250 3.85236 3.93747 3.99604 4.17083 4.34154 4.44394 4.58698 4.67944 4.87493 4.97988 5.18010 5.28481 5.30068 5.45126 5.46846 5.64688 5.78155 6.03931 6.58007 6.72808 7.27893 7.42521 8.85170 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.009287 B = 0.005993 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.384660 B = 4671.307748 C = 6863.896645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.264 3.736 10 N -0.602 5.602 11 C 0.071 3.929 12 C 0.433 3.567 13 F -0.184 7.184 14 F -0.176 7.176 15 F -0.197 7.197 16 C 0.529 3.471 17 O -0.553 6.553 18 C -0.232 4.232 19 C 0.019 3.981 20 C -0.102 4.102 21 C -0.069 4.069 22 C -0.265 4.265 23 S 0.160 5.840 24 C -0.235 4.235 25 H 0.266 0.734 26 H 0.000 1.000 27 H 0.025 0.975 28 H 0.159 0.841 29 H 0.131 0.869 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.111 0.889 33 H 0.162 0.838 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 -14.721 -2.179 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.579 4.579 8 H 0.077 0.923 9 C 0.143 3.857 10 N -0.333 5.333 11 C -0.055 4.055 12 C 0.377 3.623 13 F -0.165 7.165 14 F -0.157 7.157 15 F -0.179 7.179 16 C 0.323 3.677 17 O -0.434 6.434 18 C -0.253 4.253 19 C -0.002 4.002 20 C -0.117 4.117 21 C -0.098 4.098 22 C -0.399 4.399 23 S 0.425 5.575 24 C -0.371 4.371 25 H 0.075 0.925 26 H 0.018 0.982 27 H 0.043 0.957 28 H 0.176 0.824 29 H 0.149 0.851 30 H 0.182 0.818 31 H 0.201 0.799 32 H 0.129 0.871 33 H 0.180 0.820 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 9.734 -14.060 -4.283 17.629 hybrid contribution -0.692 0.772 1.887 2.153 sum 9.041 -13.288 -2.397 16.250 Atomic orbital electron populations 1.70060 1.07641 1.28154 1.50938 1.25836 0.95694 1.02995 0.94500 0.85501 0.78289 0.78203 0.79029 1.20404 1.20746 1.18225 1.21662 0.93437 0.91576 1.51249 0.92257 1.18792 0.87562 0.83262 0.96060 1.48052 1.45794 1.34491 1.04959 1.22941 0.98106 0.94938 0.89559 1.21612 0.81112 0.84516 0.75049 1.93173 1.96547 1.63802 1.63007 1.93180 1.88601 1.87780 1.46152 1.93181 1.41871 1.87427 1.95372 1.17942 0.81999 0.84728 0.83081 1.90854 1.59040 1.62686 1.30824 1.22303 1.03001 0.98922 1.01105 1.22478 0.94622 0.94347 0.88756 1.19499 0.92444 1.05449 0.94348 1.21023 0.94233 0.98276 0.96293 1.25404 1.03793 1.12988 0.97735 1.82467 0.94344 1.69875 1.10847 1.25681 1.05580 1.09170 0.96703 0.92501 0.98175 0.95724 0.82373 0.85122 0.81779 0.79878 0.87118 0.82012 0.79184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.54 -30.14 9.39 25.60 0.24 -29.90 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.26 13.85 4.95 85.63 0.42 14.27 16 10 N -0.60 -24.24 2.37 -836.74 -1.99 -26.22 16 11 C 0.07 2.00 5.26 86.38 0.45 2.46 16 12 C 0.43 12.41 3.29 71.98 0.24 12.65 16 13 F -0.18 -5.28 15.50 44.97 0.70 -4.58 16 14 F -0.18 -4.33 17.32 44.97 0.78 -3.55 16 15 F -0.20 -7.08 16.22 44.97 0.73 -6.35 16 16 C 0.53 20.80 6.47 85.09 0.55 21.35 16 17 O -0.55 -26.58 11.46 -4.55 -0.05 -26.63 16 18 C -0.23 -6.29 7.85 22.42 0.18 -6.12 16 19 C 0.02 0.46 9.99 23.79 0.24 0.70 16 20 C -0.10 -3.06 4.53 -19.92 -0.09 -3.15 16 21 C -0.07 -2.42 7.17 22.70 0.16 -2.25 16 22 C -0.26 -8.48 11.11 66.64 0.74 -7.73 16 23 S 0.16 4.15 23.02 -56.49 -1.30 2.85 16 24 C -0.24 -6.03 10.82 67.37 0.73 -5.30 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 27 H 0.02 1.34 7.25 -2.39 -0.02 1.32 16 28 H 0.16 2.99 6.01 -2.38 -0.01 2.98 16 29 H 0.13 3.64 8.07 -2.39 -0.02 3.62 16 30 H 0.16 3.06 5.87 -2.91 -0.02 3.05 16 31 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.11 4.29 7.39 -2.91 -0.02 4.27 16 33 H 0.16 4.75 8.06 -2.91 -0.02 4.73 16 34 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -73.43 318.65 6.65 -66.78 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.15 Total: 9.13 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 4.32 Total: -2.05 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.70 Total: -81.85 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 9 Polarization: -16.69 SS G_CDS: 2.21 Total: -14.49 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.30 Total: 2.85 kcal Total: -73.43 6.65 -66.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492088440.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.933 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds