Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47231 * 2 1 4 4 C 1.36937 * 120.00194 * 294.48192 * 3 2 1 5 5 H 1.07994 * 120.00003 * 150.32689 * 4 3 2 6 6 C 1.38811 * 119.99978 * 330.32311 * 4 3 2 7 7 N 1.31618 * 119.99589 * 337.45038 * 6 4 3 8 8 Si 1.86795 * 120.00129 * 157.45405 * 6 4 3 9 9 H 1.48498 * 109.47273 * 89.99920 * 8 6 4 10 10 H 1.48497 * 109.46952 * 209.99921 * 8 6 4 11 11 H 1.48500 * 109.47039 * 330.00011 * 8 6 4 12 12 S 1.65597 * 119.99686 * 114.47495 * 3 2 1 13 13 O 1.42101 * 106.40323 * 336.46257 * 12 3 2 14 14 O 1.42102 * 106.40394 * 203.54544 * 12 3 2 15 15 C 1.76200 * 107.22027 * 90.00372 * 12 3 2 16 16 C 1.38166 * 120.01705 * 115.20809 * 15 12 3 17 17 C 1.38224 * 120.07060 * 180.25284 * 16 15 12 18 18 C 1.38410 * 120.09415 * 359.79353 * 17 16 15 19 19 Cl 1.73599 * 119.98337 * 179.97438 * 18 17 16 20 20 C 1.38232 * 120.03439 * 359.97438 * 18 17 16 21 21 C 1.38725 * 120.01282 * 295.00064 * 15 12 3 22 22 O 1.35897 * 120.04758 * 0.02562 * 21 15 12 23 23 C 1.42903 * 116.99696 * 179.72285 * 22 21 15 24 24 H 1.09006 * 109.46853 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47080 * 299.99366 * 1 2 3 26 26 H 1.09004 * 109.47108 * 60.00109 * 1 2 3 27 27 H 1.09007 * 109.47266 * 240.00409 * 2 1 3 28 28 H 1.08997 * 109.47278 * 120.00566 * 2 1 3 29 29 H 0.97007 * 119.99872 * 180.02562 * 7 6 4 30 30 H 1.08007 * 119.96834 * 0.02934 * 16 15 12 31 31 H 1.07996 * 119.95414 * 179.76659 * 17 16 15 32 32 H 1.07998 * 120.03772 * 180.02562 * 20 18 17 33 33 H 1.09003 * 109.47294 * 180.02562 * 23 22 21 34 34 H 1.08998 * 109.47126 * 59.99830 * 23 22 21 35 35 H 1.09001 * 109.47338 * 299.99912 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7833 2.1906 -1.0793 5 1 1.6867 3.2576 -0.9432 6 6 1.6693 1.6397 -2.3482 7 7 2.2046 0.4653 -2.6062 8 14 0.7562 2.5650 -3.6897 9 1 1.7071 3.4372 -4.4246 10 1 0.1451 1.5941 -4.6326 11 1 -0.3094 3.3991 -3.0782 12 16 2.8546 1.9637 1.3053 13 8 2.4733 1.1633 2.4158 14 8 2.7067 3.3768 1.2786 15 6 4.5621 1.6367 1.0191 16 6 5.4493 2.6839 0.8605 17 6 6.7882 2.4286 0.6308 18 6 7.2443 1.1235 0.5633 19 17 8.9263 0.8062 0.2740 20 6 6.3611 0.0727 0.7262 21 6 5.0171 0.3276 0.9573 22 8 4.1464 -0.7036 1.1168 23 6 4.6841 -2.0251 1.0348 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1253 0.0804 -3.4931 30 1 5.0958 3.7032 0.9125 31 1 7.4794 3.2486 0.5033 32 1 6.7169 -0.9456 0.6740 33 1 3.8848 -2.7521 1.1789 34 1 5.4406 -2.1581 1.8082 35 1 5.1368 -2.1730 0.0544 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604483802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -83.111370 kcal Electronic energy + Delta-G solvation = -23819.073013 eV Core-core repulsion = 20164.058572 eV Total energy + Delta-G solvation = -3655.014440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.84390 -37.45297 -36.22052 -36.02965 -35.65382 -34.35236 -31.78632 -30.72184 -29.94936 -29.18527 -27.07807 -24.89273 -22.73724 -22.07096 -21.48268 -18.59861 -18.20122 -17.12711 -16.57730 -16.13062 -16.00256 -15.48008 -15.00325 -14.80089 -14.24185 -14.09411 -13.75917 -13.36352 -13.18323 -12.83167 -12.49229 -12.17019 -11.99946 -11.78384 -11.72974 -11.34805 -11.23271 -10.95754 -10.91154 -10.89210 -10.66516 -10.64342 -10.61688 -10.47472 -10.13629 -9.76231 -9.68679 -9.34105 -8.77683 -8.09189 -7.85496 -6.50234 -4.07399 1.13376 1.63124 1.84478 2.13695 3.09086 3.15926 3.24016 3.48224 3.73194 4.00126 4.51672 4.74386 4.93610 5.11323 5.15479 5.20337 5.34403 5.41313 5.66999 5.81138 5.84982 5.92731 6.18087 6.26442 6.36865 6.40809 6.47806 6.56155 6.81258 6.91445 7.00773 7.22998 7.41328 7.50221 7.64673 8.32499 8.71473 9.19104 10.38039 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.005755 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.787410 B = 4864.570461 C = 5228.116568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.112 3.888 3 N -0.794 5.794 4 C -0.242 4.242 5 H 0.111 0.889 6 C 0.039 3.961 7 N -0.823 5.823 8 Si 0.920 3.080 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.263 1.263 12 S 2.537 3.463 13 O -0.992 6.992 14 O -0.990 6.990 15 C -0.677 4.677 16 C 0.015 3.985 17 C -0.176 4.176 18 C 0.034 3.966 19 Cl -0.078 7.078 20 C -0.226 4.226 21 C 0.234 3.766 22 O -0.292 6.292 23 C 0.026 3.974 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.273 0.727 30 H 0.149 0.851 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.053 0.947 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -4.128 1.356 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 N -0.618 5.618 4 C -0.391 4.391 5 H 0.129 0.871 6 C -0.175 4.175 7 N -0.461 5.461 8 Si 0.745 3.255 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.187 1.187 12 S 2.636 3.364 13 O -0.982 6.982 14 O -0.980 6.980 15 C -0.754 4.754 16 C -0.004 4.004 17 C -0.195 4.195 18 C 0.007 3.993 19 Cl -0.049 7.049 20 C -0.246 4.246 21 C 0.185 3.815 22 O -0.203 6.203 23 C -0.069 4.069 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.167 0.833 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.981 -3.941 2.254 7.509 hybrid contribution 1.002 -0.175 -1.207 1.578 sum 6.983 -4.116 1.047 8.173 Atomic orbital electron populations 1.21909 0.97371 0.99622 1.01624 1.21487 0.93250 0.83005 1.03635 1.53870 1.52726 1.20266 1.34919 1.19838 1.40741 0.93143 0.85360 0.87114 1.25716 0.96864 0.96576 0.98349 1.69930 1.37223 1.16871 1.22112 0.86022 0.80148 0.79466 0.79874 1.19886 1.20452 1.18682 1.11119 0.73175 0.74315 0.77814 1.93360 1.81623 1.69846 1.53367 1.93328 1.85503 1.31239 1.87889 1.31740 1.31778 0.95349 1.16570 1.20752 0.91086 0.98819 0.89733 1.21003 0.96783 0.94684 1.07056 1.20698 0.84260 0.94614 0.99712 1.98346 1.16103 1.96101 1.94380 1.21024 0.92677 0.99255 1.11665 1.18134 0.87460 0.87194 0.88666 1.86265 1.34616 1.14050 1.85373 1.23114 1.00917 0.81640 1.01255 0.93695 0.93882 0.92250 0.87967 0.91409 0.91640 0.83307 0.84900 0.84550 0.87756 0.92830 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.94 37.16 0.37 -2.53 16 2 C 0.11 2.47 5.08 -4.04 -0.02 2.45 16 3 N -0.79 -19.03 2.99 -59.91 -0.18 -19.21 16 4 C -0.24 -5.93 8.69 -15.06 -0.13 -6.06 16 5 H 0.11 2.73 7.33 -52.49 -0.38 2.35 16 6 C 0.04 0.90 4.52 -17.43 -0.08 0.82 16 7 N -0.82 -19.40 11.02 55.49 0.61 -18.79 16 8 Si 0.92 18.29 29.61 -169.99 -5.03 13.26 16 9 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 10 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 12 S 2.54 61.20 5.22 -107.50 -0.56 60.64 16 13 O -0.99 -25.28 15.93 -62.49 -1.00 -26.27 16 14 O -0.99 -25.43 15.82 -57.17 -0.90 -26.33 16 15 C -0.68 -14.70 5.92 -39.43 -0.23 -14.93 16 16 C 0.02 0.30 9.54 -39.61 -0.38 -0.08 16 17 C -0.18 -2.96 9.83 -39.52 -0.39 -3.35 16 18 C 0.03 0.56 6.32 -39.52 -0.25 0.31 16 19 Cl -0.08 -1.08 28.95 -51.86 -1.50 -2.58 16 20 C -0.23 -3.88 8.82 -39.40 -0.35 -4.23 16 21 C 0.23 4.67 6.63 -39.22 -0.26 4.41 16 22 O -0.29 -5.56 6.91 -29.14 -0.20 -5.76 16 23 C 0.03 0.34 9.81 101.05 0.99 1.34 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.21 7.30 -51.93 -0.38 0.83 16 27 H 0.10 2.34 5.53 -51.93 -0.29 2.05 16 28 H 0.07 1.46 5.44 -51.93 -0.28 1.18 16 29 H 0.27 6.03 8.31 -40.82 -0.34 5.70 16 30 H 0.15 2.72 7.33 -52.48 -0.38 2.34 16 31 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.14 1.94 6.30 -52.49 -0.33 1.61 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 35 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -29.13 318.23 -8.37 -37.50 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -3.67 Total: 4.61 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -0.73 Total: -21.86 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.43 Total: -37.99 kcal Atomic # 8 Polarization: -56.26 SS G_CDS: -2.10 Total: -58.36 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 61.20 SS G_CDS: -0.56 Total: 60.64 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.13 -8.37 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604483802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.616 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds