Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47231 * 2 1 4 4 C 1.36937 * 120.00194 * 294.48192 * 3 2 1 5 5 H 1.07994 * 120.00003 * 150.32689 * 4 3 2 6 6 C 1.38811 * 119.99978 * 330.32311 * 4 3 2 7 7 N 1.31618 * 119.99589 * 337.45038 * 6 4 3 8 8 Si 1.86795 * 120.00129 * 157.45405 * 6 4 3 9 9 H 1.48498 * 109.47273 * 89.99920 * 8 6 4 10 10 H 1.48497 * 109.46952 * 209.99921 * 8 6 4 11 11 H 1.48500 * 109.47039 * 330.00011 * 8 6 4 12 12 S 1.65597 * 119.99686 * 114.47495 * 3 2 1 13 13 O 1.42101 * 106.40323 * 336.46257 * 12 3 2 14 14 O 1.42102 * 106.40394 * 203.54544 * 12 3 2 15 15 C 1.76200 * 107.22027 * 90.00372 * 12 3 2 16 16 C 1.38166 * 120.01705 * 115.20809 * 15 12 3 17 17 C 1.38224 * 120.07060 * 180.25284 * 16 15 12 18 18 C 1.38410 * 120.09415 * 359.79353 * 17 16 15 19 19 Cl 1.73599 * 119.98337 * 179.97438 * 18 17 16 20 20 C 1.38232 * 120.03439 * 359.97438 * 18 17 16 21 21 C 1.38725 * 120.01282 * 295.00064 * 15 12 3 22 22 O 1.35897 * 120.04758 * 0.02562 * 21 15 12 23 23 C 1.42903 * 116.99696 * 179.72285 * 22 21 15 24 24 H 1.09006 * 109.46853 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47080 * 299.99366 * 1 2 3 26 26 H 1.09004 * 109.47108 * 60.00109 * 1 2 3 27 27 H 1.09007 * 109.47266 * 240.00409 * 2 1 3 28 28 H 1.08997 * 109.47278 * 120.00566 * 2 1 3 29 29 H 0.97007 * 119.99872 * 180.02562 * 7 6 4 30 30 H 1.08007 * 119.96834 * 0.02934 * 16 15 12 31 31 H 1.07996 * 119.95414 * 179.76659 * 17 16 15 32 32 H 1.07998 * 120.03772 * 180.02562 * 20 18 17 33 33 H 1.09003 * 109.47294 * 180.02562 * 23 22 21 34 34 H 1.08998 * 109.47126 * 59.99830 * 23 22 21 35 35 H 1.09001 * 109.47338 * 299.99912 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7833 2.1906 -1.0793 5 1 1.6867 3.2576 -0.9432 6 6 1.6693 1.6397 -2.3482 7 7 2.2046 0.4653 -2.6062 8 14 0.7562 2.5650 -3.6897 9 1 1.7071 3.4372 -4.4246 10 1 0.1451 1.5941 -4.6326 11 1 -0.3094 3.3991 -3.0782 12 16 2.8546 1.9637 1.3053 13 8 2.4733 1.1633 2.4158 14 8 2.7067 3.3768 1.2786 15 6 4.5621 1.6367 1.0191 16 6 5.4493 2.6839 0.8605 17 6 6.7882 2.4286 0.6308 18 6 7.2443 1.1235 0.5633 19 17 8.9263 0.8062 0.2740 20 6 6.3611 0.0727 0.7262 21 6 5.0171 0.3276 0.9573 22 8 4.1464 -0.7036 1.1168 23 6 4.6841 -2.0251 1.0348 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1253 0.0804 -3.4931 30 1 5.0958 3.7032 0.9125 31 1 7.4794 3.2486 0.5033 32 1 6.7169 -0.9456 0.6740 33 1 3.8848 -2.7521 1.1789 34 1 5.4406 -2.1581 1.8082 35 1 5.1368 -2.1730 0.0544 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604483802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -101.180554 kcal Electronic energy + Delta-G solvation = -23819.856551 eV Core-core repulsion = 20164.058572 eV Total energy + Delta-G solvation = -3655.797979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21221 -38.79229 -37.81971 -37.66989 -37.36456 -36.31545 -33.56465 -32.13286 -31.32079 -30.88461 -28.22669 -26.68082 -24.19639 -23.43641 -23.20436 -20.28879 -19.75797 -18.79638 -18.32347 -17.75325 -17.50754 -16.84739 -16.54131 -16.32225 -15.97642 -15.50995 -15.22500 -14.95926 -14.57899 -14.40360 -14.06039 -13.74114 -13.66034 -13.04146 -13.03000 -12.93073 -12.68488 -12.65186 -12.59048 -12.56150 -12.50723 -12.10191 -12.09026 -11.93558 -11.83609 -11.44407 -11.41164 -11.09252 -10.17806 -9.67617 -9.43745 -8.26038 -5.92527 -0.32641 0.05998 0.23513 0.84932 1.50897 1.54711 1.66919 2.19225 2.28005 2.37134 2.76193 2.95335 3.29714 3.56564 3.80930 3.93441 4.16990 4.32311 4.37892 4.46802 4.50524 4.55897 4.68592 4.76107 4.82751 4.85266 4.99739 5.06884 5.12473 5.33543 5.44940 5.52469 5.71717 5.89538 6.19372 6.51624 6.90666 7.38948 8.63137 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.005755 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.787410 B = 4864.570461 C = 5228.116568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.113 3.887 3 N -0.804 5.804 4 C -0.272 4.272 5 H 0.097 0.903 6 C 0.015 3.985 7 N -0.840 5.840 8 Si 0.975 3.025 9 H -0.272 1.272 10 H -0.269 1.269 11 H -0.264 1.264 12 S 2.548 3.452 13 O -1.015 7.015 14 O -1.016 7.016 15 C -0.713 4.713 16 C 0.001 3.999 17 C -0.172 4.172 18 C 0.036 3.964 19 Cl -0.045 7.045 20 C -0.224 4.224 21 C 0.221 3.779 22 O -0.318 6.318 23 C 0.012 3.988 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.279 0.721 30 H 0.148 0.852 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.637 -5.177 0.485 9.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.013 4.013 3 N -0.628 5.628 4 C -0.420 4.420 5 H 0.115 0.885 6 C -0.197 4.197 7 N -0.478 5.478 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.194 1.194 11 H -0.188 1.188 12 S 2.651 3.349 13 O -1.005 7.005 14 O -1.007 7.007 15 C -0.795 4.795 16 C -0.019 4.019 17 C -0.191 4.191 18 C 0.009 3.991 19 Cl -0.016 7.016 20 C -0.243 4.243 21 C 0.173 3.827 22 O -0.230 6.230 23 C -0.081 4.081 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.184 0.816 33 H 0.142 0.858 34 H 0.093 0.907 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.429 -5.004 1.378 9.063 hybrid contribution 0.752 0.062 -0.875 1.155 sum 8.181 -4.942 0.503 9.571 Atomic orbital electron populations 1.21893 0.95999 1.01401 1.00927 1.21533 0.94429 0.82179 1.03156 1.53756 1.53686 1.20826 1.34569 1.19833 1.43022 0.92862 0.86256 0.88536 1.26284 0.96845 0.97219 0.99376 1.69975 1.37471 1.17569 1.22794 0.85208 0.78972 0.78529 0.77549 1.19759 1.19368 1.18824 1.10175 0.73934 0.73435 0.77372 1.93314 1.82687 1.70098 1.54353 1.93279 1.86454 1.32719 1.88219 1.31338 1.30609 0.97345 1.20212 1.20888 0.92272 0.98386 0.90311 1.21282 0.96042 0.96044 1.05776 1.20893 0.85886 0.94383 0.97964 1.98362 1.13313 1.95949 1.94001 1.21313 0.91541 1.00991 1.10485 1.18294 0.88726 0.86894 0.88811 1.86227 1.35791 1.15740 1.85256 1.23512 1.02478 0.79501 1.02658 0.90659 0.94362 0.93084 0.88696 0.91427 0.91074 0.83396 0.81828 0.81606 0.85808 0.90680 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 9.94 71.98 0.72 -4.95 16 2 C 0.11 5.03 5.08 86.38 0.44 5.46 16 3 N -0.80 -39.55 2.99 -343.44 -1.03 -40.58 16 4 C -0.27 -13.68 8.69 84.03 0.73 -12.95 16 5 H 0.10 4.99 7.33 -2.91 -0.02 4.96 16 6 C 0.01 0.69 4.52 84.86 0.38 1.07 16 7 N -0.84 -39.43 11.02 21.65 0.24 -39.19 16 8 Si 0.97 37.22 29.61 68.60 2.03 39.25 16 9 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 10 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 11 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 12 S 2.55 127.05 5.22 -56.49 -0.29 126.75 16 13 O -1.01 -53.24 15.93 -122.92 -1.96 -55.20 16 14 O -1.02 -54.44 15.82 -128.00 -2.02 -56.47 16 15 C -0.71 -31.41 5.92 22.37 0.13 -31.28 16 16 C 0.00 0.03 9.54 22.25 0.21 0.24 16 17 C -0.17 -5.49 9.83 22.31 0.22 -5.27 16 18 C 0.04 1.10 6.32 22.31 0.14 1.24 16 19 Cl -0.05 -1.09 28.95 -2.72 -0.08 -1.17 16 20 C -0.22 -7.19 8.82 22.39 0.20 -6.99 16 21 C 0.22 8.73 6.63 22.51 0.15 8.88 16 22 O -0.32 -11.99 6.91 -83.09 -0.57 -12.56 16 23 C 0.01 0.30 9.81 113.37 1.11 1.41 16 24 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 2.08 7.30 -2.39 -0.02 2.06 16 27 H 0.10 4.38 5.53 -2.38 -0.01 4.37 16 28 H 0.07 2.97 5.44 -2.39 -0.01 2.95 16 29 H 0.28 12.12 8.31 -92.70 -0.77 11.35 16 30 H 0.15 5.58 7.33 -2.91 -0.02 5.55 16 31 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 32 H 0.17 4.18 6.30 -2.91 -0.02 4.17 16 33 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.07 1.52 7.66 -2.39 -0.02 1.50 16 35 H 0.07 1.56 7.66 -2.39 -0.02 1.54 16 Total: -1.00 -63.22 318.23 1.87 -61.35 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 1.13 Total: 20.95 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 4.43 Total: -43.14 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -0.79 Total: -79.77 kcal Atomic # 8 Polarization: -119.67 SS G_CDS: -4.56 Total: -124.23 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: 127.05 SS G_CDS: -0.29 Total: 126.75 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -63.22 1.87 -61.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604483802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.828 kcal (2) G-P(sol) polarization free energy of solvation -63.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds