Wall clock time and date at job start Tue Mar 31 2020 12:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38727 * 120.04408 * 359.72400 * 3 2 1 5 5 C 1.38239 * 119.92681 * 179.78542 * 4 3 2 6 6 Cl 1.73605 * 119.98654 * 180.21230 * 5 4 3 7 7 C 1.38404 * 120.03289 * 0.49474 * 5 4 3 8 8 C 1.38228 * 120.09545 * 359.73606 * 7 5 4 9 9 C 1.38177 * 120.06571 * 0.02889 * 8 7 5 10 10 S 1.76206 * 120.01159 * 179.97438 * 9 8 7 11 11 O 1.42095 * 106.39995 * 228.55855 * 10 9 8 12 12 O 1.42097 * 106.40245 * 1.48612 * 10 9 8 13 13 N 1.65607 * 107.21490 * 115.02030 * 10 9 8 14 14 C 1.46496 * 119.99682 * 65.00109 * 13 10 9 15 15 H 1.09001 * 109.47227 * 24.99826 * 14 13 10 16 16 C 1.53003 * 109.47215 * 264.99460 * 14 13 10 17 17 C 1.50703 * 109.46944 * 145.00133 * 14 13 10 18 18 H 1.07996 * 119.99923 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99839 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00028 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99889 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46722 * 59.99990 * 21 19 17 23 23 H 1.48494 * 109.47197 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47195 * 300.00344 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 28 28 H 1.08002 * 120.03942 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.95623 * 179.71877 * 7 5 4 30 30 H 1.08002 * 119.96661 * 179.97438 * 8 7 5 31 31 H 0.96995 * 120.00042 * 244.99947 * 13 10 9 32 32 H 1.09000 * 109.46848 * 300.00547 * 16 14 13 33 33 H 1.09002 * 109.46704 * 60.00527 * 16 14 13 34 34 H 1.08996 * 109.47090 * 179.97438 * 16 14 13 35 35 H 0.97004 * 119.99557 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3749 -0.0058 5 6 1.9217 3.6053 -0.0013 6 17 0.9788 5.0631 -0.0029 7 6 3.3039 3.6757 -0.0014 8 6 4.0569 2.5165 -0.0004 9 6 3.4312 1.2845 0.0000 10 16 4.3925 -0.1922 0.0005 11 8 3.8553 -1.0210 -1.0211 12 8 5.7535 0.2150 0.0357 13 7 4.0992 -0.9675 1.4342 14 6 2.7606 -1.4863 1.7258 15 1 2.2348 -1.6810 0.7910 16 6 1.9811 -0.4552 2.5443 17 6 2.8784 -2.7666 2.5120 18 1 3.8529 -3.1551 2.7684 19 6 1.7420 -3.4419 2.9039 20 7 0.5553 -2.9690 2.5912 21 14 1.8880 -5.0292 3.8778 22 1 2.6052 -4.7646 5.1510 23 1 0.5311 -5.5545 4.1746 24 1 2.6439 -6.0301 3.0828 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2129 2.3200 -0.0099 29 1 3.7949 4.6376 -0.0024 30 1 5.1354 2.5738 -0.0009 31 1 4.8137 -1.0780 2.0808 32 1 2.5069 -0.2605 3.4790 33 1 1.8958 0.4709 1.9757 34 1 0.9849 -0.8410 2.7609 35 1 -0.2441 -3.4444 2.8667 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608781249.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:56 Heat of formation + Delta-G solvation = -104.886484 kcal Electronic energy + Delta-G solvation = -23752.499639 eV Core-core repulsion = 20096.540959 eV Total energy + Delta-G solvation = -3655.958680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49411 -38.96076 -38.10365 -37.46575 -37.08627 -36.82693 -34.03919 -32.34821 -31.39603 -30.03759 -28.27024 -27.16995 -24.43493 -23.54388 -22.72377 -20.49264 -19.78639 -19.12423 -18.28018 -17.64836 -17.55764 -17.01825 -16.94680 -16.48100 -16.19213 -15.59259 -15.32121 -15.07463 -14.54146 -14.17214 -13.90464 -13.87809 -13.45887 -13.20954 -13.15017 -13.08804 -13.00989 -12.81425 -12.70497 -12.64661 -12.37607 -12.16435 -12.10133 -11.94727 -11.84011 -11.73769 -10.94802 -10.50278 -10.32294 -9.99733 -9.52696 -8.06692 -6.17335 -0.56716 -0.33982 0.16145 0.82280 1.48002 1.49215 1.55680 2.06317 2.16894 2.37037 2.50719 2.79099 3.23108 3.37164 3.68001 3.88946 3.99502 4.25934 4.30602 4.41294 4.46369 4.63840 4.72979 4.86136 4.90587 4.97280 5.02719 5.15686 5.26279 5.42729 5.67608 5.92534 6.10892 6.15063 6.25051 6.51346 6.90920 7.49146 8.97748 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.005127 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.484110 B = 5460.169084 C = 6467.712764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.232 3.768 4 C -0.228 4.228 5 C 0.053 3.947 6 Cl -0.042 7.042 7 C -0.169 4.169 8 C 0.024 3.976 9 C -0.724 4.724 10 S 2.710 3.290 11 O -0.990 6.990 12 O -0.991 6.991 13 N -1.102 6.102 14 C 0.274 3.726 15 H 0.051 0.949 16 C -0.140 4.140 17 C -0.546 4.546 18 H 0.057 0.943 19 C 0.025 3.975 20 N -0.902 5.902 21 Si 0.954 3.046 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.279 1.279 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.165 0.835 29 H 0.175 0.825 30 H 0.172 0.828 31 H 0.414 0.586 32 H 0.022 0.978 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 14.871 -3.812 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.183 3.817 4 C -0.248 4.248 5 C 0.026 3.974 6 Cl -0.012 7.012 7 C -0.189 4.189 8 C 0.004 3.996 9 C -0.813 4.813 10 S 2.801 3.199 11 O -0.980 6.980 12 O -0.981 6.981 13 N -0.863 5.863 14 C 0.169 3.831 15 H 0.068 0.932 16 C -0.199 4.199 17 C -0.586 4.586 18 H 0.075 0.925 19 C -0.176 4.176 20 N -0.540 5.540 21 Si 0.780 3.220 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.205 1.205 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.182 0.818 29 H 0.192 0.808 30 H 0.190 0.810 31 H 0.248 0.752 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.622 14.482 -4.599 15.207 hybrid contribution -0.616 -0.442 1.131 1.362 sum -1.238 14.040 -3.468 14.515 Atomic orbital electron populations 1.23351 0.75615 1.05613 1.02515 1.86518 1.24571 1.25016 1.85794 1.18376 0.90598 0.85805 0.86937 1.21344 1.02038 0.90114 1.11285 1.21075 0.92649 0.87649 0.96026 1.98395 1.72344 1.34328 1.96159 1.21345 0.91242 1.00459 1.05846 1.21037 1.01646 0.88822 0.88072 1.30212 1.04624 1.20303 1.26132 1.00971 0.72309 0.73513 0.73132 1.93529 1.80684 1.66616 1.57217 1.93481 1.33433 1.83920 1.87281 1.55376 1.20934 1.72275 1.37712 1.18516 0.76992 0.91473 0.96101 0.93180 1.22220 1.02578 0.96986 0.98163 1.21613 0.93123 1.08165 1.35668 0.92463 1.25497 0.95088 1.00218 0.96787 1.69924 0.97555 1.39959 1.46592 0.85693 0.77109 0.80119 0.79097 1.19867 1.20728 1.20499 0.87925 0.90040 0.91064 0.81788 0.80802 0.81030 0.75155 0.95905 0.94757 0.90654 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.52 113.37 1.08 1.74 16 2 O -0.31 -11.33 4.37 -83.13 -0.36 -11.70 16 3 C 0.23 7.62 4.31 22.50 0.10 7.72 16 4 C -0.23 -5.95 8.82 22.39 0.20 -5.76 16 5 C 0.05 1.22 6.32 22.31 0.14 1.36 16 6 Cl -0.04 -0.78 28.95 -2.72 -0.08 -0.85 16 7 C -0.17 -3.64 9.83 22.31 0.22 -3.42 16 8 C 0.02 0.61 9.54 22.25 0.21 0.83 16 9 C -0.72 -24.01 5.73 22.37 0.13 -23.88 16 10 S 2.71 106.23 5.45 -56.49 -0.31 105.92 16 11 O -0.99 -46.14 16.64 -122.92 -2.04 -48.19 16 12 O -0.99 -38.47 16.97 -128.00 -2.17 -40.64 16 13 N -1.10 -45.82 5.46 -172.52 -0.94 -46.76 16 14 C 0.27 13.08 2.13 44.25 0.09 13.18 16 15 H 0.05 2.64 5.40 -2.39 -0.01 2.63 16 16 C -0.14 -6.17 8.10 71.98 0.58 -5.58 16 17 C -0.55 -28.71 8.76 25.60 0.22 -28.49 16 18 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 19 C 0.02 1.29 5.30 84.65 0.45 1.74 16 20 N -0.90 -46.94 11.32 21.45 0.24 -46.70 16 21 Si 0.95 41.74 29.54 68.60 2.03 43.77 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 26 H 0.08 1.79 7.65 -2.39 -0.02 1.77 16 27 H 0.07 1.87 7.67 -2.38 -0.02 1.85 16 28 H 0.16 3.54 6.30 -2.91 -0.02 3.52 16 29 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.17 3.79 7.33 -2.91 -0.02 3.77 16 31 H 0.41 15.63 8.83 -96.75 -0.85 14.77 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.03 1.32 4.28 -2.39 -0.01 1.31 16 34 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 35 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -64.54 312.37 0.08 -64.46 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.30 Total: 21.26 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.42 Total: -40.57 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -0.70 Total: -93.46 kcal Atomic # 8 Polarization: -95.95 SS G_CDS: -4.58 Total: -100.53 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 106.23 SS G_CDS: -0.31 Total: 105.92 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.85 kcal Total: -64.54 0.08 -64.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608781249.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.424 kcal (2) G-P(sol) polarization free energy of solvation -64.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds