Wall clock time and date at job start Tue Mar 31 2020 12:56:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38135 * 119.96855 * 2 1
4 4 C 1.38846 * 119.92913 * 180.02562 * 3 2 1
5 5 N 1.39928 * 120.06752 * 179.97438 * 4 3 2
6 6 C 1.34770 * 120.00177 * 33.29415 * 5 4 3
7 7 O 1.21289 * 120.00298 * 5.27493 * 6 5 4
8 8 C 1.50706 * 120.00105 * 185.27584 * 6 5 4
9 9 S 1.80998 * 109.47122 * 179.97438 * 8 6 5
10 10 C 1.76203 * 99.99963 * 179.97438 * 9 8 6
11 11 H 1.07999 * 119.99998 * 359.97438 * 10 9 8
12 12 C 1.38796 * 119.99942 * 180.02562 * 10 9 8
13 13 N 1.31626 * 120.00036 * 359.97438 * 12 10 9
14 14 Si 1.86801 * 119.99917 * 180.02562 * 12 10 9
15 15 H 1.48500 * 109.47255 * 359.97438 * 14 12 10
16 16 H 1.48496 * 109.47359 * 119.99451 * 14 12 10
17 17 H 1.48495 * 109.47137 * 239.99837 * 14 12 10
18 18 C 1.38885 * 119.86182 * 0.02562 * 4 3 2
19 19 C 1.38096 * 119.93139 * 0.02562 * 18 4 3
20 20 C 1.50699 * 119.96828 * 179.97438 * 19 18 4
21 21 F 1.39898 * 109.47212 * 269.98137 * 20 19 18
22 22 F 1.39901 * 109.46966 * 29.97791 * 20 19 18
23 23 F 1.39903 * 109.47193 * 149.97625 * 20 19 18
24 24 C 1.38262 * 119.96167 * 180.02562 * 2 1 3
25 25 H 1.09002 * 109.47066 * 269.97766 * 1 2 3
26 26 H 1.09003 * 109.47172 * 29.96434 * 1 2 3
27 27 H 1.08994 * 109.47626 * 149.97089 * 1 2 3
28 28 H 1.08001 * 120.03213 * 359.97438 * 3 2 1
29 29 H 0.97007 * 119.99865 * 213.28716 * 5 4 3
30 30 H 1.09003 * 109.46634 * 299.99996 * 8 6 5
31 31 H 1.09000 * 109.47258 * 59.99489 * 8 6 5
32 32 H 0.97010 * 120.00002 * 180.02562 * 13 12 10
33 33 H 1.08000 * 120.03882 * 179.97438 * 18 4 3
34 34 H 1.07995 * 119.93147 * 359.71892 * 24 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1970 1.1967 0.0000
4 6 3.5854 1.1957 -0.0005
5 7 4.2873 2.4062 -0.0011
6 6 3.7817 3.4787 0.6396
7 8 2.7676 3.3705 1.2961
8 6 4.4762 4.8125 0.5402
9 16 3.5604 6.0427 1.5014
10 6 4.5647 7.4624 1.2174
11 1 5.4472 7.3847 0.5997
12 6 4.2222 8.6802 1.7883
13 7 3.1469 8.7747 2.5415
14 14 5.2865 10.1854 1.4866
15 1 6.4283 9.8170 0.6115
16 1 4.4763 11.2402 0.8260
17 1 5.8012 10.6956 2.7827
18 6 4.2761 -0.0092 -0.0016
19 6 3.5805 -1.2022 -0.0027
20 6 4.3291 -2.5101 -0.0044
21 9 4.5599 -2.9136 -1.3239
22 9 5.5526 -2.3480 0.6543
23 9 3.5699 -3.4829 0.6548
24 6 2.1975 -1.1978 -0.0005
25 1 -0.3633 -0.0004 1.0277
26 1 -0.3634 0.8903 -0.5133
27 1 -0.3634 -0.8896 -0.5142
28 1 1.6570 2.1320 -0.0004
29 1 5.1380 2.4734 -0.4625
30 1 5.4893 4.7246 0.9328
31 1 4.5168 5.1241 -0.5035
32 1 2.9073 9.6260 2.9403
33 1 5.3561 -0.0133 -0.0025
34 1 1.6558 -2.1321 0.0036
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000617160509.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:24
Heat of formation + Delta-G solvation = -167.724589 kcal
Electronic energy + Delta-G solvation = -23285.254617 eV
Core-core repulsion = 19087.147182 eV
Total energy + Delta-G solvation = -4198.107435 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 319.059 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-50.38361 -47.89597 -47.84830 -40.63201 -38.74187 -35.05055 -33.29309 -32.51064
-31.10626 -28.72450 -27.34323 -26.31993 -25.57686 -22.81251 -21.71157 -20.52943
-18.74173 -18.71421 -18.22669 -17.98441 -16.76414 -16.50632 -16.33014 -15.67250
-14.90077 -14.87481 -14.73211 -14.52162 -14.29707 -14.20538 -14.06509 -14.00969
-13.96066 -13.59208 -13.45589 -12.85978 -12.75862 -12.66991 -12.48227 -12.11643
-11.87694 -11.56617 -11.12767 -11.10729 -10.83995 -10.52015 -9.90997 -9.71105
-9.15177 -9.11936 -8.36801 -8.35525 -6.61257 -6.30047 -4.02009 0.74314
0.95460 2.38678 2.69862 2.77055 3.16807 3.20735 3.26168 3.34125
3.44577 3.52631 3.82966 4.11672 4.19793 4.47959 4.74865 4.79540
4.93594 5.04879 5.05821 5.10366 5.31563 5.43636 5.46425 5.60416
5.70105 5.77221 5.84827 5.97148 6.01949 6.14737 6.30681 6.72068
7.30653 7.52320 8.22592 8.27312 9.15770 10.77388
Molecular weight = 319.06amu
Principal moments of inertia in cm(-1)
A = 0.026801 B = 0.002538 C = 0.002384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1044.489900 B =11029.167251 C =11742.715181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.065 4.065
3 C -0.092 4.092
4 C 0.166 3.834
5 N -0.680 5.680
6 C 0.533 3.467
7 O -0.493 6.493
8 C -0.155 4.155
9 S -0.056 6.056
10 C -0.537 4.537
11 H 0.074 0.926
12 C 0.074 3.926
13 N -0.867 5.867
14 Si 0.920 3.080
15 H -0.271 1.271
16 H -0.279 1.279
17 H -0.279 1.279
18 C -0.112 4.112
19 C -0.161 4.161
20 C 0.511 3.489
21 F -0.178 7.178
22 F -0.177 7.177
23 F -0.177 7.177
24 C -0.096 4.096
25 H 0.077 0.923
26 H 0.073 0.927
27 H 0.069 0.931
28 H 0.148 0.852
29 H 0.413 0.587
30 H 0.095 0.905
31 H 0.096 0.904
32 H 0.269 0.731
33 H 0.137 0.863
34 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.649 -21.464 -7.998 22.915
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.065 4.065
3 C -0.113 4.113
4 C 0.070 3.930
5 N -0.327 5.327
6 C 0.321 3.679
7 O -0.365 6.365
8 C -0.305 4.305
9 S 0.170 5.830
10 C -0.685 4.685
11 H 0.093 0.907
12 C -0.136 4.136
13 N -0.502 5.502
14 Si 0.746 3.254
15 H -0.196 1.196
16 H -0.205 1.205
17 H -0.205 1.205
18 C -0.133 4.133
19 C -0.163 4.163
20 C 0.457 3.543
21 F -0.159 7.159
22 F -0.158 7.158
23 F -0.158 7.158
24 C -0.115 4.115
25 H 0.096 0.904
26 H 0.092 0.908
27 H 0.088 0.912
28 H 0.166 0.834
29 H 0.249 0.751
30 H 0.113 0.887
31 H 0.114 0.886
32 H 0.079 0.921
33 H 0.155 0.845
34 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -1.120 -21.457 -6.788 22.534
hybrid contribution 2.567 0.905 -1.102 2.936
sum 1.447 -20.552 -7.891 22.063
Atomic orbital electron populations
1.20817 0.89940 1.03211 1.03134 1.19769 0.96773 0.91713 0.98280
1.21405 0.92610 0.99462 0.97782 1.17566 0.91447 0.85221 0.98730
1.43729 1.25082 1.08904 1.55001 1.20603 0.84966 0.84896 0.77473
1.90727 1.23937 1.84176 1.37676 1.23556 1.04482 0.95725 1.06734
1.85421 1.34783 1.00020 1.62758 1.22887 1.13490 0.95089 1.37034
0.90737 1.25001 0.95530 0.98618 0.94406 1.70018 1.23730 1.26123
1.30305 0.86093 0.79789 0.81244 0.78239 1.19574 1.20510 1.20516
1.20555 1.00344 0.90001 1.02353 1.19588 0.94792 0.91347 1.10599
1.18260 0.77300 0.85006 0.73726 1.93223 1.94749 1.91857 1.36064
1.93196 1.45851 1.95613 1.81178 1.93188 1.75750 1.65732 1.81170
1.20728 0.91837 0.98903 0.99985 0.90410 0.90821 0.91209 0.83437
0.75120 0.88690 0.88573 0.92130 0.84480 0.84787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16
2 C -0.06 -0.70 5.88 -104.65 -0.62 -1.32 16
3 C -0.09 -1.21 8.31 -39.39 -0.33 -1.54 16
4 C 0.17 2.09 6.28 -83.70 -0.53 1.57 16
5 N -0.68 -8.56 5.34 -9.86 -0.05 -8.61 16
6 C 0.53 9.08 7.59 -10.99 -0.08 8.99 16
7 O -0.49 -10.14 13.55 5.55 0.08 -10.07 16
8 C -0.15 -2.86 6.16 36.01 0.22 -2.63 16
9 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16
10 C -0.54 -14.72 9.50 30.94 0.29 -14.42 16
11 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16
12 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16
13 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16
14 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16
15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
18 C -0.11 -1.22 9.31 -39.39 -0.37 -1.58 16
19 C -0.16 -1.72 5.45 -104.65 -0.57 -2.29 16
20 C 0.51 5.21 3.36 36.01 0.12 5.33 16
21 F -0.18 -1.83 17.30 2.25 0.04 -1.79 16
22 F -0.18 -1.88 16.46 2.25 0.04 -1.85 16
23 F -0.18 -1.81 16.46 2.25 0.04 -1.78 16
24 C -0.10 -0.97 9.05 -39.55 -0.36 -1.33 16
25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
26 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16
27 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16
28 H 0.15 2.19 6.42 -52.49 -0.34 1.85 16
29 H 0.41 3.73 8.82 -40.82 -0.36 3.37 16
30 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16
31 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16
32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16
33 H 0.14 1.24 7.60 -52.49 -0.40 0.84 16
34 H 0.13 1.09 7.59 -52.49 -0.40 0.69 16
LS Contribution 327.30 15.07 4.93 4.93
Total: -1.00 -32.21 327.30 -6.52 -38.74
By element:
Atomic # 1 Polarization: 4.00 SS G_CDS: -3.15 Total: 0.86 kcal
Atomic # 6 Polarization: -5.94 SS G_CDS: -1.95 Total: -7.88 kcal
Atomic # 7 Polarization: -33.98 SS G_CDS: 0.68 Total: -33.30 kcal
Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.07 kcal
Atomic # 9 Polarization: -5.52 SS G_CDS: 0.11 Total: -5.41 kcal
Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal
Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -32.21 -6.52 -38.74 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000617160509.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -128.989 kcal
(2) G-P(sol) polarization free energy of solvation -32.210 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.200 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.725 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds