Wall clock time and date at job start Tue Mar 31 2020 12:56:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38135 * 119.96855 * 2 1
4 4 C 1.38846 * 119.92913 * 180.02562 * 3 2 1
5 5 N 1.39928 * 120.06752 * 179.97438 * 4 3 2
6 6 C 1.34770 * 120.00177 * 33.29415 * 5 4 3
7 7 O 1.21289 * 120.00298 * 5.27493 * 6 5 4
8 8 C 1.50706 * 120.00105 * 185.27584 * 6 5 4
9 9 S 1.80998 * 109.47122 * 179.97438 * 8 6 5
10 10 C 1.76203 * 99.99963 * 179.97438 * 9 8 6
11 11 H 1.07999 * 119.99998 * 359.97438 * 10 9 8
12 12 C 1.38796 * 119.99942 * 180.02562 * 10 9 8
13 13 N 1.31626 * 120.00036 * 359.97438 * 12 10 9
14 14 Si 1.86801 * 119.99917 * 180.02562 * 12 10 9
15 15 H 1.48500 * 109.47255 * 359.97438 * 14 12 10
16 16 H 1.48496 * 109.47359 * 119.99451 * 14 12 10
17 17 H 1.48495 * 109.47137 * 239.99837 * 14 12 10
18 18 C 1.38885 * 119.86182 * 0.02562 * 4 3 2
19 19 C 1.38096 * 119.93139 * 0.02562 * 18 4 3
20 20 C 1.50699 * 119.96828 * 179.97438 * 19 18 4
21 21 F 1.39898 * 109.47212 * 269.98137 * 20 19 18
22 22 F 1.39901 * 109.46966 * 29.97791 * 20 19 18
23 23 F 1.39903 * 109.47193 * 149.97625 * 20 19 18
24 24 C 1.38262 * 119.96167 * 180.02562 * 2 1 3
25 25 H 1.09002 * 109.47066 * 269.97766 * 1 2 3
26 26 H 1.09003 * 109.47172 * 29.96434 * 1 2 3
27 27 H 1.08994 * 109.47626 * 149.97089 * 1 2 3
28 28 H 1.08001 * 120.03213 * 359.97438 * 3 2 1
29 29 H 0.97007 * 119.99865 * 213.28716 * 5 4 3
30 30 H 1.09003 * 109.46634 * 299.99996 * 8 6 5
31 31 H 1.09000 * 109.47258 * 59.99489 * 8 6 5
32 32 H 0.97010 * 120.00002 * 180.02562 * 13 12 10
33 33 H 1.08000 * 120.03882 * 179.97438 * 18 4 3
34 34 H 1.07995 * 119.93147 * 359.71892 * 24 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1970 1.1967 0.0000
4 6 3.5854 1.1957 -0.0005
5 7 4.2873 2.4062 -0.0011
6 6 3.7817 3.4787 0.6396
7 8 2.7676 3.3705 1.2961
8 6 4.4762 4.8125 0.5402
9 16 3.5604 6.0427 1.5014
10 6 4.5647 7.4624 1.2174
11 1 5.4472 7.3847 0.5997
12 6 4.2222 8.6802 1.7883
13 7 3.1469 8.7747 2.5415
14 14 5.2865 10.1854 1.4866
15 1 6.4283 9.8170 0.6115
16 1 4.4763 11.2402 0.8260
17 1 5.8012 10.6956 2.7827
18 6 4.2761 -0.0092 -0.0016
19 6 3.5805 -1.2022 -0.0027
20 6 4.3291 -2.5101 -0.0044
21 9 4.5599 -2.9136 -1.3239
22 9 5.5526 -2.3480 0.6543
23 9 3.5699 -3.4829 0.6548
24 6 2.1975 -1.1978 -0.0005
25 1 -0.3633 -0.0004 1.0277
26 1 -0.3634 0.8903 -0.5133
27 1 -0.3634 -0.8896 -0.5142
28 1 1.6570 2.1320 -0.0004
29 1 5.1380 2.4734 -0.4625
30 1 5.4893 4.7246 0.9328
31 1 4.5168 5.1241 -0.5035
32 1 2.9073 9.6260 2.9403
33 1 5.3561 -0.0133 -0.0025
34 1 1.6558 -2.1321 0.0036
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000617160509.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:23
Heat of formation + Delta-G solvation = -186.972869 kcal
Electronic energy + Delta-G solvation = -23286.089286 eV
Core-core repulsion = 19087.147182 eV
Total energy + Delta-G solvation = -4198.942104 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 319.059 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-51.19309 -48.70789 -48.65373 -41.72707 -39.85665 -36.19834 -34.59242 -34.13216
-32.29351 -29.99409 -28.12428 -27.67054 -27.17335 -23.86371 -22.57753 -21.70675
-19.96006 -19.52344 -19.48674 -19.10374 -18.08168 -17.53588 -17.35618 -16.88593
-16.78516 -16.07259 -15.91540 -15.56090 -15.37616 -15.10409 -15.00156 -14.86933
-14.81732 -14.77349 -14.53867 -14.30878 -13.87794 -13.72100 -13.29533 -13.20997
-13.15675 -12.92242 -12.71056 -12.59842 -12.41762 -11.74389 -11.57709 -11.16493
-11.07747 -10.30203 -10.02240 -9.33966 -8.67770 -8.35962 -6.13750 -0.16218
0.04983 1.20392 1.41224 1.42366 1.43983 1.55098 1.60844 2.05378
2.25593 2.41745 2.66627 2.99018 3.00464 3.25534 3.39031 3.62443
3.82332 3.97206 4.02407 4.18491 4.23601 4.26039 4.47054 4.50916
4.72855 4.80019 4.97835 5.03078 5.09595 5.27226 5.42298 5.43473
5.75319 6.19345 6.25415 6.99658 7.06303 8.73271
Molecular weight = 319.06amu
Principal moments of inertia in cm(-1)
A = 0.026801 B = 0.002538 C = 0.002384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1044.489900 B =11029.167251 C =11742.715181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.067 4.067
3 C -0.112 4.112
4 C 0.146 3.854
5 N -0.658 5.658
6 C 0.538 3.462
7 O -0.536 6.536
8 C -0.130 4.130
9 S -0.145 6.145
10 C -0.545 4.545
11 H 0.085 0.915
12 C 0.014 3.986
13 N -0.911 5.911
14 Si 0.998 3.002
15 H -0.256 1.256
16 H -0.275 1.275
17 H -0.275 1.275
18 C -0.104 4.104
19 C -0.166 4.166
20 C 0.518 3.482
21 F -0.177 7.177
22 F -0.179 7.179
23 F -0.176 7.176
24 C -0.088 4.088
25 H 0.079 0.921
26 H 0.069 0.931
27 H 0.094 0.906
28 H 0.123 0.877
29 H 0.431 0.569
30 H 0.117 0.883
31 H 0.118 0.882
32 H 0.271 0.729
33 H 0.158 0.842
34 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.206 -22.789 -9.245 24.692
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.068 4.068
3 C -0.133 4.133
4 C 0.051 3.949
5 N -0.306 5.306
6 C 0.325 3.675
7 O -0.411 6.411
8 C -0.281 4.281
9 S 0.082 5.918
10 C -0.693 4.693
11 H 0.103 0.897
12 C -0.191 4.191
13 N -0.547 5.547
14 Si 0.820 3.180
15 H -0.180 1.180
16 H -0.200 1.200
17 H -0.201 1.201
18 C -0.125 4.125
19 C -0.168 4.168
20 C 0.464 3.536
21 F -0.158 7.158
22 F -0.160 7.160
23 F -0.157 7.157
24 C -0.107 4.107
25 H 0.098 0.902
26 H 0.088 0.912
27 H 0.113 0.887
28 H 0.141 0.859
29 H 0.271 0.729
30 H 0.135 0.865
31 H 0.136 0.864
32 H 0.080 0.920
33 H 0.175 0.825
34 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 0.471 -22.825 -8.072 24.215
hybrid contribution 2.065 1.124 -0.767 2.473
sum 2.536 -21.702 -8.839 23.569
Atomic orbital electron populations
1.20883 0.88427 1.04274 1.03539 1.20002 0.97977 0.91211 0.97606
1.21393 0.93185 0.99452 0.99232 1.17658 0.91406 0.85443 1.00393
1.43321 1.25453 1.07909 1.53870 1.20287 0.84326 0.85346 0.77525
1.90723 1.25759 1.84776 1.39879 1.23371 1.04126 0.94205 1.06407
1.85579 1.37752 1.03064 1.65357 1.23236 1.13617 0.95539 1.36924
0.89726 1.26102 0.96864 1.02173 0.93965 1.70178 1.25809 1.27053
1.31675 0.84917 0.78076 0.76686 0.78357 1.17968 1.20029 1.20091
1.20700 1.01354 0.89248 1.01154 1.19740 0.95175 0.91535 1.10356
1.18102 0.77110 0.84694 0.73699 1.93229 1.94730 1.91820 1.36012
1.93196 1.45974 1.95613 1.81235 1.93193 1.75719 1.65651 1.81163
1.21017 0.91853 0.99473 0.98354 0.90250 0.91227 0.88728 0.85879
0.72931 0.86518 0.86425 0.91994 0.82456 0.82395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.82 10.01 71.23 0.71 -1.11 16
2 C -0.07 -1.40 5.88 -19.88 -0.12 -1.52 16
3 C -0.11 -2.96 8.31 22.39 0.19 -2.77 16
4 C 0.15 3.53 6.28 38.15 0.24 3.77 16
5 N -0.66 -15.74 5.34 -303.51 -1.62 -17.36 16
6 C 0.54 18.23 7.59 87.66 0.67 18.90 16
7 O -0.54 -22.77 13.55 -3.06 -0.04 -22.81 16
8 C -0.13 -4.72 6.16 71.24 0.44 -4.28 16
9 S -0.14 -7.64 20.57 -56.49 -1.16 -8.80 16
10 C -0.55 -30.01 9.50 67.95 0.65 -29.37 16
11 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16
12 C 0.01 0.77 5.49 84.86 0.47 1.23 16
13 N -0.91 -54.67 13.22 21.65 0.29 -54.38 16
14 Si 1.00 42.53 29.55 68.60 2.03 44.56 16
15 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16
16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16
17 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16
18 C -0.10 -2.05 9.31 22.39 0.21 -1.85 16
19 C -0.17 -3.16 5.45 -19.88 -0.11 -3.27 16
20 C 0.52 9.27 3.36 71.24 0.24 9.51 16
21 F -0.18 -3.19 17.30 44.97 0.78 -2.41 16
22 F -0.18 -3.38 16.46 44.97 0.74 -2.64 16
23 F -0.18 -3.16 16.46 44.97 0.74 -2.42 16
24 C -0.09 -1.59 9.05 22.29 0.20 -1.39 16
25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
26 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16
27 H 0.09 1.01 8.08 -2.39 -0.02 1.00 16
28 H 0.12 3.86 6.42 -2.91 -0.02 3.84 16
29 H 0.43 6.81 8.82 -92.70 -0.82 5.99 16
30 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16
31 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16
32 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16
33 H 0.16 2.39 7.60 -2.91 -0.02 2.37 16
34 H 0.16 2.05 7.59 -2.91 -0.02 2.03 16
Total: -1.00 -71.54 327.30 5.88 -65.66
By element:
Atomic # 1 Polarization: 12.39 SS G_CDS: 0.35 Total: 12.74 kcal
Atomic # 6 Polarization: -15.91 SS G_CDS: 3.78 Total: -12.13 kcal
Atomic # 7 Polarization: -70.41 SS G_CDS: -1.33 Total: -71.74 kcal
Atomic # 8 Polarization: -22.77 SS G_CDS: -0.04 Total: -22.81 kcal
Atomic # 9 Polarization: -9.73 SS G_CDS: 2.26 Total: -7.47 kcal
Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal
Atomic # 16 Polarization: -7.64 SS G_CDS: -1.16 Total: -8.80 kcal
Total: -71.54 5.88 -65.66 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000617160509.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.308 kcal
(2) G-P(sol) polarization free energy of solvation -71.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.849 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) -186.973 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds