Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00267 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00272 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47346 * 305.00031 * 12 11 10 14 14 O 1.42904 * 109.47396 * 64.99580 * 12 11 10 15 15 C 1.52997 * 109.47504 * 184.99955 * 12 11 10 16 16 O 1.42904 * 109.47392 * 175.00085 * 15 12 11 17 17 C 1.35916 * 116.99801 * 179.97438 * 16 15 12 18 18 C 1.38753 * 120.04097 * 359.72758 * 17 16 15 19 19 C 1.38137 * 119.98438 * 179.72197 * 18 17 16 20 20 C 1.38361 * 120.05216 * 0.54665 * 19 18 17 21 21 Cl 1.73595 * 119.96011 * 179.70050 * 20 19 18 22 22 C 1.38464 * 120.07455 * 359.72996 * 20 19 18 23 23 Cl 1.73601 * 119.99010 * 180.02562 * 22 20 19 24 24 C 1.38276 * 120.01497 * 359.97438 * 22 20 19 25 25 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 27 27 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 28 28 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 29 29 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 30 30 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 31 31 H 0.96708 * 113.99258 * 60.00195 * 14 12 11 32 32 H 1.09003 * 109.46810 * 294.99909 * 15 12 11 33 33 H 1.08998 * 109.47247 * 54.99778 * 15 12 11 34 34 H 1.08006 * 120.00340 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.97160 * 180.27658 * 19 18 17 36 36 H 1.08004 * 120.02059 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 1 3.2112 -5.9175 -0.8436 14 8 3.2722 -6.0159 1.2192 15 6 1.8049 -7.3842 -0.1281 16 8 2.7653 -8.4359 -0.2458 17 6 2.2833 -9.7009 -0.3669 18 6 0.9141 -9.9255 -0.3666 19 6 0.4253 -11.2111 -0.4955 20 6 1.3003 -12.2764 -0.6136 21 17 0.6836 -13.8918 -0.7676 22 6 2.6672 -12.0556 -0.6084 23 17 3.7630 -13.3937 -0.7573 24 6 3.1595 -10.7693 -0.4856 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 2.8406 -3.5486 0.7807 29 1 0.8801 -4.9817 0.8886 30 1 0.8807 -4.9812 -0.8913 31 1 2.7288 -6.1222 2.0121 32 1 1.1911 -7.5501 0.7572 33 1 1.1695 -7.3717 -1.0136 34 1 0.2305 -9.0949 -0.2697 35 1 -0.6405 -11.3852 -0.4997 36 1 4.2257 -10.5968 -0.4820 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -104.138307 kcal Electronic energy + Delta-G solvation = -20822.278536 eV Core-core repulsion = 17164.308593 eV Total energy + Delta-G solvation = -3657.969943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.053 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41133 -39.52032 -38.42419 -37.58855 -37.12780 -36.33199 -34.41017 -32.42235 -31.67664 -30.59147 -28.76468 -26.10867 -24.26326 -23.65285 -22.99738 -22.47568 -19.56455 -18.68206 -18.04059 -17.68388 -17.53833 -16.98572 -16.69038 -16.38004 -16.18263 -15.56344 -15.26566 -14.91833 -14.78527 -14.60511 -14.49329 -14.12849 -13.56843 -13.35991 -13.08198 -12.94566 -12.76426 -12.66979 -12.64704 -12.57190 -12.15879 -12.07204 -11.95407 -11.75566 -11.62220 -11.44016 -10.96357 -10.65843 -10.09406 -9.30350 -9.13277 -8.23272 -6.33841 -0.15659 0.01230 0.74034 1.09884 1.42235 1.45101 1.53170 1.99551 2.32848 2.40663 3.10301 3.38662 3.46383 3.55178 3.76335 3.86587 3.99777 4.00788 4.11237 4.14403 4.31389 4.40607 4.58385 4.64656 4.70293 4.92459 4.98646 5.05086 5.13049 5.23307 5.26490 5.60796 6.01347 6.18897 6.42756 6.70285 6.80440 6.88619 7.37033 8.87742 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.038929 B = 0.001856 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.094042 B =15083.990914 C =15645.501442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.690 5.690 11 C 0.034 3.966 12 C 0.124 3.876 13 H 0.100 0.900 14 O -0.566 6.566 15 C 0.031 3.969 16 O -0.312 6.312 17 C 0.143 3.857 18 C -0.191 4.191 19 C -0.052 4.052 20 C -0.083 4.083 21 Cl -0.053 7.053 22 C 0.000 4.000 23 Cl -0.044 7.044 24 C -0.146 4.146 25 H 0.266 0.734 26 H 0.004 0.996 27 H -0.035 1.035 28 H 0.339 0.661 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.385 0.615 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -27.941 0.226 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.321 5.321 11 C -0.096 4.096 12 C 0.064 3.936 13 H 0.118 0.882 14 O -0.373 6.373 15 C -0.045 4.045 16 O -0.225 6.225 17 C 0.096 3.904 18 C -0.209 4.209 19 C -0.071 4.071 20 C -0.110 4.110 21 Cl -0.024 7.024 22 C -0.028 4.028 23 Cl -0.015 7.015 24 C -0.165 4.165 25 H 0.074 0.926 26 H 0.022 0.978 27 H -0.017 1.017 28 H 0.157 0.843 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.234 0.766 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.183 0.817 35 H 0.187 0.813 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.276 -27.927 -0.888 27.970 hybrid contribution -0.741 0.592 1.127 1.473 sum 0.535 -27.335 0.239 27.342 Atomic orbital electron populations 1.70060 1.07636 1.28093 1.51391 1.25918 0.95823 1.03271 0.94590 0.85411 0.78145 0.77788 0.79117 1.19454 1.20726 1.19201 1.21528 0.93790 0.91633 1.50775 0.92013 1.19207 0.90528 0.88624 0.93485 1.60420 1.20419 1.01318 1.49989 1.22507 0.95668 0.89870 1.01586 1.21797 0.93505 0.89834 0.88433 0.88166 1.86638 1.38785 1.95797 1.16072 1.23715 0.91294 0.85175 1.04283 1.86153 1.36628 1.12728 1.86963 1.19019 0.92398 0.84622 0.94365 1.21633 0.94000 0.98993 1.06316 1.21112 1.01019 0.89627 0.95297 1.20782 0.91605 0.88205 1.10439 1.98382 1.87148 1.20522 1.96340 1.20468 0.89464 0.89497 1.03344 1.98398 1.62668 1.44507 1.95935 1.20266 1.01389 0.88354 1.06491 0.92566 0.97825 1.01726 0.84316 0.94442 0.90237 0.76569 0.88959 0.88759 0.81662 0.81317 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.36 9.32 25.60 0.24 -30.12 16 8 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.21 10.79 5.44 85.55 0.47 11.26 16 10 N -0.69 -28.19 6.49 -517.93 -3.36 -31.56 16 11 C 0.03 0.99 5.36 86.30 0.46 1.46 16 12 C 0.12 2.96 3.49 30.59 0.11 3.07 16 13 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 14 O -0.57 -14.29 12.83 -144.34 -1.85 -16.14 16 15 C 0.03 0.52 4.37 71.98 0.31 0.83 16 16 O -0.31 -6.42 10.10 -87.97 -0.89 -7.31 16 17 C 0.14 2.57 6.69 22.50 0.15 2.72 16 18 C -0.19 -2.60 9.04 22.37 0.20 -2.40 16 19 C -0.05 -0.68 9.82 22.28 0.22 -0.46 16 20 C -0.08 -1.35 6.32 22.35 0.14 -1.21 16 21 Cl -0.05 -0.83 27.95 -2.72 -0.08 -0.91 16 22 C 0.00 0.00 6.32 22.33 0.14 0.14 16 23 Cl -0.04 -0.77 27.95 -2.72 -0.08 -0.84 16 24 C -0.15 -2.67 9.77 22.38 0.22 -2.45 16 25 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 27 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 28 H 0.34 13.65 8.28 -89.69 -0.74 12.91 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.39 6.80 9.05 -74.05 -0.67 6.13 16 32 H 0.09 1.14 7.65 -2.39 -0.02 1.12 16 33 H 0.09 1.29 7.67 -2.39 -0.02 1.28 16 34 H 0.17 1.51 6.30 -2.91 -0.02 1.49 16 35 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -66.33 342.75 -1.10 -67.43 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.28 Total: 14.91 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 3.12 Total: -16.55 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -3.08 Total: -86.37 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -2.74 Total: -23.45 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.15 Total: -1.75 kcal Total: -66.33 -1.10 -67.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.706 kcal (2) G-P(sol) polarization free energy of solvation -66.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds