Wall clock time and date at job start Tue Mar 31 2020 12:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48502 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47196 * 300.00277 * 3 2 1 6 6 H 1.48502 * 109.46921 * 60.00232 * 3 2 1 7 7 C 1.37872 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00277 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00123 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.34770 * 119.99822 * 270.00654 * 10 9 7 12 12 O 1.21297 * 119.99583 * 184.73939 * 11 10 9 13 13 C 1.50705 * 120.00510 * 4.73403 * 11 10 9 14 14 S 1.81396 * 109.46854 * 180.02562 * 13 11 10 15 15 C 1.81404 * 102.99645 * 180.02562 * 14 13 11 16 16 F 1.39901 * 109.47204 * 299.99807 * 15 14 13 17 17 F 1.39901 * 109.47109 * 59.99766 * 15 14 13 18 18 C 1.40029 * 119.99749 * 90.00028 * 10 9 7 19 19 C 1.38849 * 120.04594 * 247.64464 * 18 10 9 20 20 C 1.38112 * 119.95571 * 179.72453 * 19 18 10 21 21 C 1.38478 * 120.04415 * 0.55179 * 20 19 18 22 22 F 1.35095 * 119.95366 * 179.70620 * 21 20 19 23 23 C 1.38470 * 120.08859 * 359.71922 * 21 20 19 24 24 C 1.38115 * 120.04615 * 0.02562 * 23 21 20 25 25 H 0.97005 * 119.99747 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46997 * 60.00515 * 9 7 2 27 27 H 1.09004 * 109.47328 * 300.00227 * 9 7 2 28 28 H 1.08995 * 109.46772 * 300.00064 * 13 11 10 29 29 H 1.09000 * 109.46397 * 60.00391 * 13 11 10 30 30 H 1.08995 * 109.47164 * 180.02562 * 15 14 13 31 31 H 1.08002 * 120.01859 * 359.97438 * 19 18 10 32 32 H 1.08005 * 119.97913 * 180.25059 * 20 19 18 33 33 H 1.08003 * 119.97778 * 179.97438 * 23 21 20 34 34 H 1.08005 * 120.02466 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6400 -4.1243 -1.1695 12 8 3.3601 -5.1004 -1.1722 13 6 2.2339 -3.4839 -2.4719 14 16 2.9769 -4.3968 -3.8521 15 6 2.3835 -3.4904 -5.3071 16 9 0.9850 -3.5177 -5.3353 17 9 2.8228 -2.1638 -5.2413 18 6 2.6588 -4.1454 1.2104 19 6 3.9871 -3.9885 1.5829 20 6 4.4334 -4.5097 2.7815 21 6 3.5597 -5.1984 3.6062 22 9 3.9996 -5.7126 4.7755 23 6 2.2360 -5.3609 3.2339 24 6 1.7845 -4.8366 2.0385 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8897 28 1 1.1481 -3.5061 -2.5646 29 1 2.5793 -2.4502 -2.4915 30 1 2.7739 -3.9584 -6.2108 31 1 4.6699 -3.4556 0.9377 32 1 5.4656 -4.3843 3.0736 33 1 1.5562 -5.8987 3.8782 34 1 0.7520 -4.9639 1.7482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823201111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:34 Heat of formation + Delta-G solvation = -141.673092 kcal Electronic energy + Delta-G solvation = -24062.720535 eV Core-core repulsion = 19865.742777 eV Total energy + Delta-G solvation = -4196.977758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.059 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.09659 -48.69173 -47.18747 -40.08000 -38.00880 -35.21381 -32.78440 -30.94254 -30.61155 -28.52572 -27.13174 -26.85714 -23.45011 -22.66075 -22.42243 -19.56569 -18.10842 -17.62116 -17.49576 -17.39396 -17.00973 -16.92312 -16.03354 -15.96245 -15.36288 -14.94156 -14.91566 -14.50811 -14.23659 -14.05767 -13.51932 -13.42353 -13.35088 -13.21446 -13.15271 -12.61138 -12.47256 -12.22525 -12.00070 -11.70413 -11.41885 -11.19491 -10.94515 -10.88909 -10.39016 -10.11509 -9.98614 -9.61119 -8.88347 -8.74098 -8.69155 -8.11823 -7.84614 -6.34239 -4.43047 0.89032 1.34826 1.47789 1.97391 2.90992 3.14234 3.23640 3.26706 3.50655 3.76867 3.82685 4.21585 4.38002 4.46637 4.47129 4.90008 4.97997 5.00169 5.05239 5.30079 5.47546 5.60832 5.68791 5.78371 6.09621 6.31331 6.38141 6.53296 6.65858 6.89695 7.00138 7.33325 7.58902 7.81458 7.86487 8.49023 8.66770 9.26011 10.72758 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.009676 B = 0.005183 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.069875 B = 5400.827129 C = 7494.274497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.236 3.764 10 N -0.554 5.554 11 C 0.542 3.458 12 O -0.538 6.538 13 C -0.112 4.112 14 S -0.173 6.173 15 C 0.271 3.729 16 F -0.189 7.189 17 F -0.187 7.187 18 C 0.166 3.834 19 C -0.077 4.077 20 C -0.143 4.143 21 C 0.082 3.918 22 F -0.146 7.146 23 C -0.144 4.144 24 C -0.093 4.093 25 H 0.267 0.733 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -7.325 -3.581 8.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.282 5.282 11 C 0.329 3.671 12 O -0.416 6.416 13 C -0.263 4.263 14 S 0.049 5.951 15 C 0.108 3.892 16 F -0.171 7.171 17 F -0.168 7.168 18 C 0.074 3.926 19 C -0.097 4.097 20 C -0.163 4.163 21 C 0.063 3.937 22 F -0.125 7.125 23 C -0.163 4.163 24 C -0.113 4.113 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.139 0.861 29 H 0.154 0.846 30 H 0.165 0.835 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.087 -8.548 -3.566 10.124 hybrid contribution -0.538 2.330 0.224 2.402 sum 3.549 -6.219 -3.342 7.901 Atomic orbital electron populations 1.69915 1.06036 1.27585 1.48894 1.24924 0.94886 0.99414 0.94302 0.86436 0.80201 0.82996 0.77932 1.19478 1.20632 1.20677 1.21431 0.93733 0.90077 1.53141 0.91737 1.19700 0.87120 0.82052 0.99386 1.45821 1.45570 1.34824 1.01955 1.19443 0.80151 0.83154 0.84346 1.90707 1.37712 1.26132 1.87066 1.23622 1.05625 1.04376 0.92660 1.87963 1.67494 1.41415 0.98240 1.24406 0.78478 0.82818 1.03534 1.93104 1.30051 1.96470 1.97441 1.93121 1.88847 1.37559 1.97310 1.17548 0.92502 0.95127 0.87415 1.21107 0.95516 0.97762 0.95292 1.20934 1.00034 1.00427 0.94892 1.17636 0.93326 0.99474 0.83259 1.91458 1.90074 1.85212 1.45713 1.20892 0.94203 1.03206 0.98033 1.21069 1.00393 0.96056 0.93797 0.92297 0.93882 0.93745 0.86079 0.84646 0.83509 0.85052 0.84796 0.84729 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.32 13.29 55.43 0.74 -22.59 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.55 -13.30 9.16 -34.44 -0.32 -13.62 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 5.18 4.88 -5.19 -0.03 5.16 16 10 N -0.55 -10.98 2.51 -114.71 -0.29 -11.27 16 11 C 0.54 10.57 7.54 -10.99 -0.08 10.49 16 12 O -0.54 -11.41 15.62 5.54 0.09 -11.32 16 13 C -0.11 -1.95 5.06 36.01 0.18 -1.76 16 14 S -0.17 -2.61 21.11 -107.50 -2.27 -4.88 16 15 C 0.27 3.29 5.91 101.05 0.60 3.88 16 16 F -0.19 -2.58 17.36 2.25 0.04 -2.55 16 17 F -0.19 -2.66 17.36 2.25 0.04 -2.62 16 18 C 0.17 3.09 4.76 -83.66 -0.40 2.70 16 19 C -0.08 -1.35 9.53 -39.40 -0.38 -1.73 16 20 C -0.14 -2.20 10.02 -39.54 -0.40 -2.59 16 21 C 0.08 1.25 7.30 -39.41 -0.29 0.97 16 22 F -0.15 -2.16 17.26 2.25 0.04 -2.12 16 23 C -0.14 -2.11 10.02 -39.54 -0.40 -2.51 16 24 C -0.09 -1.53 9.69 -39.40 -0.38 -1.91 16 25 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.04 0.96 6.47 -51.93 -0.34 0.62 16 27 H 0.04 1.03 7.86 -51.93 -0.41 0.62 16 28 H 0.12 2.00 7.26 -51.93 -0.38 1.63 16 29 H 0.14 2.45 7.91 -51.92 -0.41 2.04 16 30 H 0.15 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.13 2.01 8.06 -52.48 -0.42 1.58 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -28.04 330.69 -6.82 -34.86 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -3.19 Total: 1.94 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.98 Total: 0.71 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.45 Total: -33.86 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.12 Total: -7.28 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.27 Total: -4.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.04 -6.82 -34.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823201111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.814 kcal (2) G-P(sol) polarization free energy of solvation -28.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds