Wall clock time and date at job start Tue Mar 31 2020 12:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48503 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46871 * 299.99514 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99626 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 197.85789 * 7 2 1 9 9 C 1.41435 * 120.00029 * 17.86125 * 7 2 1 10 10 C 1.40783 * 120.17924 * 204.41025 * 9 7 2 11 11 C 1.37710 * 120.04294 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41159 * 359.97438 * 11 10 9 13 13 C 1.39882 * 120.35587 * 359.97438 * 12 11 10 14 14 C 1.47887 * 120.02374 * 180.02562 * 13 12 11 15 15 O 1.21542 * 120.00102 * 179.97438 * 14 13 12 16 16 N 1.34775 * 119.99916 * 359.97438 * 14 13 12 17 17 S 1.65606 * 119.99994 * 179.97438 * 16 14 13 18 18 O 1.42098 * 104.27769 * 181.06883 * 17 16 14 19 19 O 1.42097 * 104.27519 * 308.92598 * 17 16 14 20 20 C 1.81403 * 104.44954 * 64.99767 * 17 16 14 21 21 C 1.52996 * 109.47006 * 180.02562 * 20 17 16 22 22 F 1.39898 * 109.47011 * 299.99708 * 21 20 17 23 23 F 1.39898 * 109.47249 * 59.99709 * 21 20 17 24 24 C 1.39030 * 119.95300 * 0.02640 * 13 12 11 25 25 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.98199 * 0.03651 * 10 9 7 27 27 H 1.07993 * 119.79491 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.82173 * 180.02562 * 12 11 10 29 29 H 0.97001 * 120.00447 * 359.97438 * 16 14 13 30 30 H 1.09003 * 109.46931 * 299.99915 * 20 17 16 31 31 H 1.08998 * 109.46688 * 59.99898 * 20 17 16 32 32 H 1.09000 * 109.47023 * 180.02562 * 21 20 17 33 33 H 1.07996 * 120.20583 * 179.72054 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2874 9 6 1.3520 -2.4074 -0.3746 10 6 1.8268 -3.6499 0.0866 11 6 1.1862 -4.8123 -0.2808 12 6 0.0741 -4.7693 -1.1031 13 6 -0.4127 -3.5440 -1.5703 14 6 -1.6022 -3.5066 -2.4483 15 8 -2.0251 -2.4417 -2.8536 16 7 -2.2172 -4.6535 -2.7989 17 16 -3.5495 -4.6116 -3.7816 18 8 -3.9326 -5.9738 -3.9109 19 8 -4.4101 -3.6639 -3.1648 20 6 -2.9271 -3.9727 -5.3612 21 6 -4.0782 -3.8858 -6.3653 22 9 -4.6243 -5.1589 -6.5599 23 9 -5.0645 -3.0258 -5.8706 24 6 0.2224 -2.3613 -1.2087 25 1 -0.4850 0.8399 -0.0004 26 1 2.6939 -3.6916 0.7292 27 1 1.5541 -5.7632 0.0750 28 1 -0.4211 -5.6867 -1.3850 29 1 -1.8795 -5.5034 -2.4758 30 1 -2.5019 -2.9805 -5.2096 31 1 -2.1582 -4.6426 -5.7463 32 1 -3.7040 -3.5023 -7.3146 33 1 -0.1473 -1.4134 -1.5707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851359984.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:53 Heat of formation + Delta-G solvation = -188.378792 kcal Electronic energy + Delta-G solvation = -24458.662212 eV Core-core repulsion = 20247.286353 eV Total energy + Delta-G solvation = -4211.375858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.44836 -47.41295 -39.81418 -37.43317 -37.08515 -36.11539 -34.39226 -33.72729 -32.17372 -30.31195 -29.64828 -25.53518 -24.28115 -23.61530 -21.22172 -20.42543 -19.64907 -18.75104 -18.20717 -17.78816 -17.47274 -16.95181 -16.43745 -15.88221 -15.53568 -15.28073 -14.83652 -14.65157 -14.39503 -14.29524 -13.75872 -13.50453 -13.33187 -13.12485 -13.05314 -12.74330 -12.50966 -12.23928 -12.10234 -12.08289 -11.83767 -11.34328 -11.22090 -11.11742 -10.90191 -10.64636 -10.54237 -10.38359 -9.88297 -9.56054 -9.36668 -7.89893 -7.71462 -6.95223 -4.57047 -0.15945 1.72326 2.26758 2.64278 2.99006 3.00471 3.04152 3.05590 3.29853 3.52969 3.69516 3.79053 3.80924 4.28381 4.29960 4.43231 4.76564 4.91426 5.08619 5.29456 5.40153 5.87838 6.08281 6.48545 6.68038 6.81023 6.92188 7.04201 7.16031 7.49331 7.56996 7.76940 7.94142 8.05530 8.31653 8.63456 8.65335 9.99531 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.003768 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.507763 B = 7429.329710 C = 8422.621981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.205 4.205 11 C -0.094 4.094 12 C -0.218 4.218 13 C -0.135 4.135 14 C 0.583 3.417 15 O -0.503 6.503 16 N -1.051 6.051 17 S 2.602 3.398 18 O -0.935 6.935 19 O -0.908 6.908 20 C -0.699 4.699 21 C 0.279 3.721 22 F -0.194 7.194 23 F -0.188 7.188 24 C -0.086 4.086 25 H 0.287 0.713 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.434 0.566 30 H 0.175 0.825 31 H 0.164 0.836 32 H 0.138 0.862 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -6.413 -10.439 12.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.094 3.906 10 C -0.225 4.225 11 C -0.112 4.112 12 C -0.238 4.238 13 C -0.141 4.141 14 C 0.376 3.624 15 O -0.377 6.377 16 N -0.818 5.818 17 S 2.692 3.308 18 O -0.925 6.925 19 O -0.898 6.898 20 C -0.826 4.826 21 C 0.223 3.777 22 F -0.175 7.175 23 F -0.169 7.169 24 C -0.106 4.106 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.272 0.728 30 H 0.193 0.807 31 H 0.182 0.818 32 H 0.155 0.845 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.790 -5.705 -10.485 12.524 hybrid contribution 0.982 0.408 -0.111 1.070 sum -2.807 -5.297 -10.596 12.174 Atomic orbital electron populations 1.69771 1.07635 1.30099 1.32906 1.26005 0.94799 1.01755 0.92204 0.86200 0.80851 0.80568 0.78847 1.18254 1.19466 1.19775 1.19664 0.98360 0.90935 1.39424 0.89780 1.17605 0.91086 0.92629 0.89265 1.21159 1.03404 0.92661 1.05288 1.20457 0.95771 0.96984 0.97988 1.20347 1.01395 0.94481 1.07612 1.19279 0.96137 0.95894 1.02752 1.18939 0.83195 0.81316 0.78963 1.90858 1.64540 1.28423 1.53912 1.55009 1.48665 1.17303 1.60838 1.05560 0.74026 0.74979 0.76274 1.93660 1.79821 1.32795 1.86262 1.93695 1.61360 1.63785 1.70981 1.31789 1.09954 1.18467 1.22400 1.21270 0.82485 0.75091 0.98835 1.93103 1.87415 1.40815 1.96148 1.93132 1.64486 1.69868 1.89451 1.21708 0.96287 0.96234 0.96362 0.90157 0.88291 0.88476 0.88842 0.72782 0.80723 0.81774 0.84491 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.59 10.95 55.55 0.61 -18.98 16 2 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 3 Si 0.91 17.68 29.60 -169.99 -5.03 12.65 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.18 9.05 -37.73 -0.34 -11.52 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.10 2.38 5.57 -106.87 -0.60 1.78 16 10 C -0.21 -4.49 9.78 -38.81 -0.38 -4.87 16 11 C -0.09 -1.82 10.01 -39.72 -0.40 -2.22 16 12 C -0.22 -4.15 9.55 -38.92 -0.37 -4.52 16 13 C -0.14 -2.90 5.87 -105.04 -0.62 -3.51 16 14 C 0.58 11.31 7.51 -12.31 -0.09 11.21 16 15 O -0.50 -10.90 14.43 -11.79 -0.17 -11.07 16 16 N -1.05 -15.80 5.55 30.54 0.17 -15.63 16 17 S 2.60 38.69 4.76 -107.50 -0.51 38.18 16 18 O -0.94 -14.62 17.59 -57.54 -1.01 -15.64 16 19 O -0.91 -17.50 16.55 -64.79 -1.07 -18.57 16 20 C -0.70 -7.33 6.17 37.16 0.23 -7.10 16 21 C 0.28 2.79 5.45 37.16 0.20 2.99 16 22 F -0.19 -2.24 16.61 2.25 0.04 -2.20 16 23 F -0.19 -2.48 16.61 2.25 0.04 -2.44 16 24 C -0.09 -2.10 8.23 -38.44 -0.32 -2.42 16 25 H 0.29 6.61 8.30 -40.82 -0.34 6.28 16 26 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 27 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.09 1.41 6.38 -52.49 -0.33 1.07 16 29 H 0.43 5.28 6.81 -34.47 -0.23 5.05 16 30 H 0.17 1.85 7.19 -51.92 -0.37 1.48 16 31 H 0.16 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.14 3.59 5.74 -52.49 -0.30 3.29 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -31.76 311.03 -7.51 -39.27 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -2.48 Total: 8.29 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.77 Total: -18.55 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.78 Total: -34.61 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -2.25 Total: -45.28 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: 38.69 SS G_CDS: -0.51 Total: 38.18 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.76 -7.51 -39.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851359984.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.105 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds