Wall clock time and date at job start Tue Mar 31 2020 12:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48503 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46871 * 299.99514 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99626 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00008 * 197.85789 * 7 2 1 9 9 C 1.41435 * 120.00029 * 17.86125 * 7 2 1 10 10 C 1.40783 * 120.17924 * 204.41025 * 9 7 2 11 11 C 1.37710 * 120.04294 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41159 * 359.97438 * 11 10 9 13 13 C 1.39882 * 120.35587 * 359.97438 * 12 11 10 14 14 C 1.47887 * 120.02374 * 180.02562 * 13 12 11 15 15 O 1.21542 * 120.00102 * 179.97438 * 14 13 12 16 16 N 1.34775 * 119.99916 * 359.97438 * 14 13 12 17 17 S 1.65606 * 119.99994 * 179.97438 * 16 14 13 18 18 O 1.42098 * 104.27769 * 181.06883 * 17 16 14 19 19 O 1.42097 * 104.27519 * 308.92598 * 17 16 14 20 20 C 1.81403 * 104.44954 * 64.99767 * 17 16 14 21 21 C 1.52996 * 109.47006 * 180.02562 * 20 17 16 22 22 F 1.39898 * 109.47011 * 299.99708 * 21 20 17 23 23 F 1.39898 * 109.47249 * 59.99709 * 21 20 17 24 24 C 1.39030 * 119.95300 * 0.02640 * 13 12 11 25 25 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.98199 * 0.03651 * 10 9 7 27 27 H 1.07993 * 119.79491 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.82173 * 180.02562 * 12 11 10 29 29 H 0.97001 * 120.00447 * 359.97438 * 16 14 13 30 30 H 1.09003 * 109.46931 * 299.99915 * 20 17 16 31 31 H 1.08998 * 109.46688 * 59.99898 * 20 17 16 32 32 H 1.09000 * 109.47023 * 180.02562 * 21 20 17 33 33 H 1.07996 * 120.20583 * 179.72054 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2874 9 6 1.3520 -2.4074 -0.3746 10 6 1.8268 -3.6499 0.0866 11 6 1.1862 -4.8123 -0.2808 12 6 0.0741 -4.7693 -1.1031 13 6 -0.4127 -3.5440 -1.5703 14 6 -1.6022 -3.5066 -2.4483 15 8 -2.0251 -2.4417 -2.8536 16 7 -2.2172 -4.6535 -2.7989 17 16 -3.5495 -4.6116 -3.7816 18 8 -3.9326 -5.9738 -3.9109 19 8 -4.4101 -3.6639 -3.1648 20 6 -2.9271 -3.9727 -5.3612 21 6 -4.0782 -3.8858 -6.3653 22 9 -4.6243 -5.1589 -6.5599 23 9 -5.0645 -3.0258 -5.8706 24 6 0.2224 -2.3613 -1.2087 25 1 -0.4850 0.8399 -0.0004 26 1 2.6939 -3.6916 0.7292 27 1 1.5541 -5.7632 0.0750 28 1 -0.4211 -5.6867 -1.3850 29 1 -1.8795 -5.5034 -2.4758 30 1 -2.5019 -2.9805 -5.2096 31 1 -2.1582 -4.6426 -5.7463 32 1 -3.7040 -3.5023 -7.3146 33 1 -0.1473 -1.4134 -1.5707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851359984.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:52 Heat of formation + Delta-G solvation = -211.108793 kcal Electronic energy + Delta-G solvation = -24459.647858 eV Core-core repulsion = 20247.286353 eV Total energy + Delta-G solvation = -4212.361505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.30230 -48.28957 -41.35738 -39.02013 -38.42791 -37.40412 -35.92282 -35.34832 -33.04583 -31.99364 -31.33111 -27.28329 -25.37507 -24.92731 -22.89690 -21.95978 -20.92048 -19.91853 -19.63761 -18.66855 -18.65050 -18.04360 -17.91753 -17.19315 -16.83976 -16.64905 -16.40270 -16.12292 -15.96250 -15.23119 -15.16766 -14.69061 -14.64469 -14.35606 -14.19757 -13.99169 -13.84768 -13.52710 -13.52287 -13.39044 -13.01156 -12.98574 -12.80867 -12.58879 -12.27128 -12.20935 -12.06262 -11.73015 -11.53655 -11.16797 -11.09455 -9.59555 -9.42713 -8.68529 -6.39387 -1.31075 0.09221 0.97727 1.04540 1.39200 1.44730 1.54686 1.71076 2.16657 2.19593 2.42559 2.71731 2.82540 2.96600 3.25142 3.44121 3.64900 3.68703 3.91453 3.98716 4.26862 4.39624 4.55500 4.85698 5.04531 5.12827 5.28122 5.46018 5.55302 5.81540 5.90830 6.03475 6.25760 6.48512 6.56242 6.87024 6.90529 8.28448 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.003768 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.507763 B = 7429.329710 C = 8422.621981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.032 3.968 3 Si 0.981 3.019 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.493 4.493 8 H 0.085 0.915 9 C 0.066 3.934 10 C -0.208 4.208 11 C -0.094 4.094 12 C -0.196 4.196 13 C -0.146 4.146 14 C 0.590 3.410 15 O -0.531 6.531 16 N -1.034 6.034 17 S 2.594 3.406 18 O -0.945 6.945 19 O -0.963 6.963 20 C -0.677 4.677 21 C 0.267 3.733 22 F -0.203 7.203 23 F -0.211 7.211 24 C -0.123 4.123 25 H 0.288 0.712 26 H 0.110 0.890 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.447 0.553 30 H 0.178 0.822 31 H 0.212 0.788 32 H 0.198 0.802 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 -8.384 -11.900 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.522 4.522 8 H 0.103 0.897 9 C 0.064 3.936 10 C -0.228 4.228 11 C -0.112 4.112 12 C -0.216 4.216 13 C -0.151 4.151 14 C 0.382 3.618 15 O -0.407 6.407 16 N -0.801 5.801 17 S 2.690 3.310 18 O -0.936 6.936 19 O -0.953 6.953 20 C -0.809 4.809 21 C 0.212 3.788 22 F -0.184 7.184 23 F -0.192 7.192 24 C -0.144 4.144 25 H 0.099 0.901 26 H 0.128 0.872 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.288 0.712 30 H 0.196 0.804 31 H 0.229 0.771 32 H 0.214 0.786 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.812 -7.749 -11.888 14.467 hybrid contribution 0.646 0.751 0.244 1.020 sum -2.167 -6.998 -11.644 13.757 Atomic orbital electron populations 1.69865 1.09213 1.30775 1.35209 1.26814 0.95334 1.04883 0.91281 0.85175 0.79721 0.76225 0.78751 1.17401 1.19355 1.19286 1.19906 0.98678 0.92090 1.41549 0.89657 1.17937 0.91781 0.93915 0.89998 1.21474 1.03701 0.92741 1.04911 1.20946 0.95242 0.97894 0.97151 1.20941 1.00405 0.95237 1.04993 1.19553 0.96632 0.95982 1.02913 1.18647 0.82761 0.81889 0.78498 1.90848 1.65228 1.29893 1.54754 1.54698 1.47845 1.16565 1.61017 1.05510 0.73601 0.74306 0.77618 1.93647 1.79986 1.33133 1.86820 1.93643 1.63327 1.64803 1.73509 1.31668 1.11379 1.19323 1.18516 1.22015 0.81458 0.74542 1.00793 1.93087 1.87591 1.41559 1.96187 1.93094 1.65599 1.70606 1.89949 1.21538 0.97916 0.96422 0.98488 0.90134 0.87187 0.84114 0.84004 0.71221 0.80405 0.77088 0.78580 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.83 10.95 21.82 0.24 -43.60 16 2 C 0.03 1.59 5.14 85.25 0.44 2.03 16 3 Si 0.98 37.49 29.60 68.60 2.03 39.52 16 4 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.49 -25.19 9.05 23.47 0.21 -24.98 16 8 H 0.09 4.12 7.91 -2.91 -0.02 4.10 16 9 C 0.07 3.33 5.57 -21.32 -0.12 3.21 16 10 C -0.21 -8.93 9.78 22.77 0.22 -8.71 16 11 C -0.09 -3.36 10.01 22.18 0.22 -3.14 16 12 C -0.20 -6.82 9.55 22.70 0.22 -6.60 16 13 C -0.15 -6.15 5.87 -20.13 -0.12 -6.27 16 14 C 0.59 22.53 7.51 86.80 0.65 23.18 16 15 O -0.53 -23.45 14.43 12.52 0.18 -23.27 16 16 N -1.03 -29.10 5.55 -175.58 -0.98 -30.07 16 17 S 2.59 73.66 4.76 -56.49 -0.27 73.40 16 18 O -0.95 -27.89 17.59 -127.65 -2.25 -30.13 16 19 O -0.96 -37.62 16.55 -120.72 -2.00 -39.62 16 20 C -0.68 -12.08 6.17 71.98 0.44 -11.64 16 21 C 0.27 4.50 5.45 71.98 0.39 4.89 16 22 F -0.20 -4.15 16.61 44.97 0.75 -3.40 16 23 F -0.21 -5.32 16.61 44.97 0.75 -4.57 16 24 C -0.12 -6.24 8.23 23.01 0.19 -6.05 16 25 H 0.29 14.11 8.30 -92.71 -0.77 13.35 16 26 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 27 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.14 3.50 6.38 -2.91 -0.02 3.49 16 29 H 0.45 9.43 6.81 -96.74 -0.66 8.77 16 30 H 0.18 3.33 7.19 -2.39 -0.02 3.31 16 31 H 0.21 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.20 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 6.01 5.74 -2.91 -0.02 6.00 16 Total: -1.00 -74.65 311.03 1.74 -72.91 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.53 Total: 22.92 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 2.75 Total: -34.07 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -0.74 Total: -73.67 kcal Atomic # 8 Polarization: -88.96 SS G_CDS: -4.06 Total: -93.03 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 1.49 Total: -7.97 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 16 Polarization: 73.66 SS G_CDS: -0.27 Total: 73.40 kcal Total: -74.65 1.74 -72.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851359984.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.195 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds