Wall clock time and date at job start Tue Mar 31 2020 12:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46902 * 300.00553 * 3 2 1 6 6 H 1.48498 * 109.47023 * 60.00180 * 3 2 1 7 7 C 1.37881 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99758 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47152 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00414 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00150 * 179.97438 * 11 10 9 14 14 C 1.39919 * 120.00246 * 175.38634 * 13 11 10 15 15 C 1.38967 * 120.02731 * 214.82371 * 14 13 11 16 16 C 1.38160 * 120.08670 * 179.74581 * 15 14 13 17 17 C 1.38159 * 120.15114 * 0.55182 * 16 15 14 18 18 C 1.39006 * 120.05620 * 359.70038 * 17 16 15 19 19 S 1.76200 * 120.04422 * 180.02562 * 18 17 16 20 20 C 1.81405 * 102.99744 * 0.02562 * 19 18 17 21 21 F 1.39899 * 109.46675 * 60.00538 * 20 19 18 22 22 F 1.39908 * 109.46920 * 180.02562 * 20 19 18 23 23 F 1.39892 * 109.47516 * 300.00319 * 20 19 18 24 24 C 1.38696 * 120.03155 * 35.09687 * 14 13 11 25 25 H 0.96991 * 120.00102 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47202 * 60.00673 * 9 7 2 27 27 H 1.09003 * 109.47333 * 300.00488 * 9 7 2 28 28 H 1.09003 * 109.46786 * 300.00632 * 10 9 7 29 29 H 1.09002 * 109.46928 * 59.99701 * 10 9 7 30 30 H 0.97007 * 119.99424 * 355.38790 * 13 11 10 31 31 H 1.07992 * 119.96024 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.92953 * 180.24950 * 16 15 14 33 33 H 1.08001 * 119.97121 * 179.72537 * 17 16 15 34 34 H 1.08003 * 120.07327 * 359.95745 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9671 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1659 -6.1344 -0.0018 14 6 1.4697 -7.3442 0.0951 15 6 2.0256 -8.4128 0.7881 16 6 1.3370 -9.6063 0.8889 17 6 0.0989 -9.7457 0.2920 18 6 -0.4607 -8.6825 -0.4071 19 16 -2.0400 -8.8604 -1.1677 20 6 -2.5006 -10.5664 -0.7575 21 9 -2.5537 -10.7135 0.6327 22 9 -3.7549 -10.8554 -1.3058 23 9 -1.5483 -11.4458 -1.2835 24 6 0.2268 -7.4799 -0.5052 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8722 -3.6042 -0.8905 29 1 2.8721 -3.6042 0.8894 30 1 3.1336 -6.1356 -0.0694 31 1 2.9952 -8.3088 1.2522 32 1 1.7696 -10.4338 1.4315 33 1 -0.4349 -10.6814 0.3690 34 1 -0.2056 -6.6519 -1.0475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863617841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:17 Heat of formation + Delta-G solvation = -150.649902 kcal Electronic energy + Delta-G solvation = -23245.991677 eV Core-core repulsion = 19048.624655 eV Total energy + Delta-G solvation = -4197.367021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.059 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.69979 -48.30566 -48.21898 -40.43892 -38.45432 -34.75215 -33.58531 -31.37166 -31.27691 -29.69697 -26.97774 -25.86165 -23.51155 -23.07685 -21.46449 -20.05807 -19.72034 -19.24776 -19.08468 -18.03236 -17.10577 -16.54353 -15.91617 -15.63283 -15.49440 -15.10504 -15.06487 -14.70592 -14.62863 -14.48687 -14.33722 -14.31587 -13.97462 -13.46227 -13.40394 -13.32985 -12.50344 -12.26716 -12.05560 -11.81351 -11.26628 -11.04066 -10.99744 -10.73773 -10.64046 -10.07940 -9.98288 -9.77990 -9.34184 -9.14312 -8.43617 -8.37696 -8.09306 -6.02378 -4.07361 -0.30655 0.82556 1.11874 1.30274 2.60963 2.87387 3.14787 3.28935 3.36585 3.39309 3.41297 3.43591 3.51807 4.42150 4.57452 4.73065 4.89833 5.11714 5.22795 5.30367 5.32987 5.60464 5.90325 6.02596 6.05513 6.06957 6.13887 6.24974 6.73466 6.80594 7.50506 7.66554 7.74911 7.98243 8.27336 8.44844 9.00561 9.56867 11.08493 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.002546 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.252620 B =10992.983030 C =11876.098351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.509 3.491 12 O -0.510 6.510 13 N -0.685 5.685 14 C 0.177 3.823 15 C -0.141 4.141 16 C -0.078 4.078 17 C -0.147 4.147 18 C -0.090 4.090 19 S -0.010 6.010 20 C 0.447 3.553 21 F -0.164 7.164 22 F -0.148 7.148 23 F -0.165 7.165 24 C -0.089 4.089 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.412 0.588 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -24.212 -0.695 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.299 3.701 12 O -0.383 6.383 13 N -0.332 5.332 14 C 0.079 3.921 15 C -0.163 4.163 16 C -0.099 4.099 17 C -0.171 4.171 18 C -0.203 4.203 19 S 0.225 5.775 20 C 0.285 3.715 21 F -0.146 7.146 22 F -0.130 7.130 23 F -0.147 7.147 24 C -0.115 4.115 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.249 0.751 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.055 -23.319 -1.341 23.357 hybrid contribution 1.525 -0.198 0.787 1.728 sum 1.471 -23.517 -0.555 23.569 Atomic orbital electron populations 1.69996 1.06065 1.26617 1.49977 1.25027 0.94834 0.99299 0.95186 0.86526 0.79979 0.83757 0.77645 1.19734 1.20973 1.20977 1.21214 0.92973 0.90864 1.51673 0.92475 1.18935 0.93131 0.89313 0.98794 1.21927 1.00875 0.90960 1.03020 1.21955 0.88893 0.85436 0.73804 1.90683 1.14367 1.87064 1.46198 1.43990 1.10888 1.04007 1.74287 1.17646 0.92743 0.86444 0.95229 1.21069 1.01724 0.93289 1.00227 1.20778 0.93623 0.97238 0.98217 1.21225 0.97761 0.97431 1.00641 1.21273 0.96777 0.98082 1.04187 1.87020 1.19313 1.03749 1.67431 1.23020 0.77540 0.93970 0.76940 1.93326 1.95930 1.96460 1.28843 1.93265 1.40634 1.93733 1.85355 1.93314 1.63352 1.72021 1.86032 1.20864 0.94775 0.95840 0.99995 0.92908 0.95675 0.95682 0.89664 0.89646 0.75136 0.84883 0.84859 0.85940 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.92 4.26 -27.88 -0.12 0.80 16 10 C -0.13 -2.38 5.64 -27.88 -0.16 -2.53 16 11 C 0.51 8.96 7.67 -10.99 -0.08 8.88 16 12 O -0.51 -11.06 13.41 5.55 0.07 -10.99 16 13 N -0.69 -8.82 5.34 -9.88 -0.05 -8.88 16 14 C 0.18 2.31 6.30 -83.73 -0.53 1.78 16 15 C -0.14 -1.42 9.96 -39.34 -0.39 -1.81 16 16 C -0.08 -0.75 10.03 -39.64 -0.40 -1.14 16 17 C -0.15 -1.63 8.68 -39.33 -0.34 -1.97 16 18 C -0.09 -1.17 6.10 -39.06 -0.24 -1.40 16 19 S -0.01 -0.12 21.96 -107.50 -2.36 -2.49 16 20 C 0.45 4.69 2.98 101.05 0.30 5.00 16 21 F -0.16 -1.76 15.62 2.25 0.04 -1.73 16 22 F -0.15 -1.53 17.36 2.25 0.04 -1.49 16 23 F -0.17 -1.68 15.62 2.25 0.04 -1.64 16 24 C -0.09 -1.31 8.44 -39.18 -0.33 -1.64 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.41 3.72 8.82 -40.82 -0.36 3.36 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.12 1.23 4.54 -52.49 -0.24 1.00 16 34 H 0.15 2.57 6.22 -52.48 -0.33 2.24 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -32.33 322.33 -7.35 -39.68 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.00 Total: -0.13 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.70 Total: -7.30 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.68 Total: -34.94 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.07 Total: -10.99 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.11 Total: -4.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.36 Total: -2.49 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.33 -7.35 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863617841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.971 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds