Wall clock time and date at job start Tue Mar 31 2020 12:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46902 * 300.00553 * 3 2 1 6 6 H 1.48498 * 109.47023 * 60.00180 * 3 2 1 7 7 C 1.37881 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99758 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47152 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00414 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00150 * 179.97438 * 11 10 9 14 14 C 1.39919 * 120.00246 * 175.38634 * 13 11 10 15 15 C 1.38967 * 120.02731 * 214.82371 * 14 13 11 16 16 C 1.38160 * 120.08670 * 179.74581 * 15 14 13 17 17 C 1.38159 * 120.15114 * 0.55182 * 16 15 14 18 18 C 1.39006 * 120.05620 * 359.70038 * 17 16 15 19 19 S 1.76200 * 120.04422 * 180.02562 * 18 17 16 20 20 C 1.81405 * 102.99744 * 0.02562 * 19 18 17 21 21 F 1.39899 * 109.46675 * 60.00538 * 20 19 18 22 22 F 1.39908 * 109.46920 * 180.02562 * 20 19 18 23 23 F 1.39892 * 109.47516 * 300.00319 * 20 19 18 24 24 C 1.38696 * 120.03155 * 35.09687 * 14 13 11 25 25 H 0.96991 * 120.00102 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47202 * 60.00673 * 9 7 2 27 27 H 1.09003 * 109.47333 * 300.00488 * 9 7 2 28 28 H 1.09003 * 109.46786 * 300.00632 * 10 9 7 29 29 H 1.09002 * 109.46928 * 59.99701 * 10 9 7 30 30 H 0.97007 * 119.99424 * 355.38790 * 13 11 10 31 31 H 1.07992 * 119.96024 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.92953 * 180.24950 * 16 15 14 33 33 H 1.08001 * 119.97121 * 179.72537 * 17 16 15 34 34 H 1.08003 * 120.07327 * 359.95745 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9671 -0.0012 12 8 0.2791 -4.9672 -0.0021 13 7 2.1659 -6.1344 -0.0018 14 6 1.4697 -7.3442 0.0951 15 6 2.0256 -8.4128 0.7881 16 6 1.3370 -9.6063 0.8889 17 6 0.0989 -9.7457 0.2920 18 6 -0.4607 -8.6825 -0.4071 19 16 -2.0400 -8.8604 -1.1677 20 6 -2.5006 -10.5664 -0.7575 21 9 -2.5537 -10.7135 0.6327 22 9 -3.7549 -10.8554 -1.3058 23 9 -1.5483 -11.4458 -1.2835 24 6 0.2268 -7.4799 -0.5052 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8722 -3.6042 -0.8905 29 1 2.8721 -3.6042 0.8894 30 1 3.1336 -6.1356 -0.0694 31 1 2.9952 -8.3088 1.2522 32 1 1.7696 -10.4338 1.4315 33 1 -0.4349 -10.6814 0.3690 34 1 -0.2056 -6.6519 -1.0475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863617841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:17 Heat of formation + Delta-G solvation = -170.553945 kcal Electronic energy + Delta-G solvation = -23246.854781 eV Core-core repulsion = 19048.624655 eV Total energy + Delta-G solvation = -4198.230126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.059 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.56565 -49.16674 -49.07866 -41.61295 -39.59407 -35.96927 -35.56844 -33.13871 -32.21063 -30.87893 -27.97270 -27.59836 -24.72052 -24.20189 -22.94320 -21.31249 -20.76119 -20.12218 -19.94660 -19.06206 -18.82960 -17.64611 -17.41548 -16.76915 -16.68400 -16.40459 -15.96414 -15.93166 -15.84188 -15.48859 -15.24436 -15.19529 -15.16393 -14.69421 -14.51531 -14.25015 -14.18791 -14.03408 -13.28515 -12.96878 -12.86059 -12.68265 -12.44840 -12.00294 -11.93849 -11.76149 -11.64719 -11.28132 -10.90891 -10.78024 -10.57407 -9.46314 -9.03934 -8.18177 -6.31866 -1.20498 -0.08357 0.17329 0.38009 1.43200 1.44003 1.56101 1.57220 1.73121 2.01610 2.43607 2.52930 2.57252 2.61298 3.15591 3.70276 3.83184 3.93326 4.10903 4.28036 4.36844 4.49077 4.54545 4.68099 4.94140 5.05048 5.18743 5.21770 5.33488 5.50786 5.62399 5.81502 5.85905 6.16827 6.42228 6.86965 7.16509 7.38678 8.94541 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.002546 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.252620 B =10992.983030 C =11876.098351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.116 4.116 11 C 0.511 3.489 12 O -0.563 6.563 13 N -0.660 5.660 14 C 0.154 3.846 15 C -0.123 4.123 16 C -0.069 4.069 17 C -0.147 4.147 18 C -0.101 4.101 19 S -0.039 6.039 20 C 0.461 3.539 21 F -0.162 7.162 22 F -0.146 7.146 23 F -0.159 7.159 24 C -0.117 4.117 25 H 0.262 0.738 26 H -0.017 1.017 27 H -0.017 1.017 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.434 0.566 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.134 0.866 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.984 -25.831 0.266 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.002 3.998 10 C -0.155 4.155 11 C 0.302 3.698 12 O -0.440 6.440 13 N -0.308 5.308 14 C 0.057 3.943 15 C -0.145 4.145 16 C -0.089 4.089 17 C -0.171 4.171 18 C -0.214 4.214 19 S 0.197 5.803 20 C 0.299 3.701 21 F -0.144 7.144 22 F -0.127 7.127 23 F -0.141 7.141 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.001 0.999 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.274 0.726 31 H 0.189 0.811 32 H 0.193 0.807 33 H 0.152 0.848 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.259 -24.986 -0.384 25.201 hybrid contribution 0.490 0.173 0.494 0.717 sum 3.749 -24.814 0.110 25.095 Atomic orbital electron populations 1.70176 1.08307 1.27709 1.51585 1.26126 0.95687 1.03938 0.94745 0.85297 0.79424 0.78233 0.77430 1.17431 1.20832 1.20797 1.21740 0.94095 0.91477 1.50523 0.90345 1.18718 0.93762 0.92455 0.94854 1.21667 0.99310 0.88905 1.05623 1.21686 0.88072 0.86568 0.73510 1.90687 1.16572 1.87847 1.48908 1.43520 1.11730 1.02769 1.72764 1.17865 0.92646 0.87106 0.96642 1.21454 1.02793 0.91918 0.98290 1.21295 0.92514 0.98103 0.96964 1.21517 0.98578 0.97081 0.99906 1.21321 0.96796 0.98248 1.05049 1.87095 1.19900 1.05579 1.67776 1.22671 0.77588 0.92996 0.76879 1.93326 1.95942 1.96369 1.28787 1.93272 1.40517 1.93569 1.85352 1.93322 1.63188 1.71638 1.85982 1.20704 0.96243 0.95736 1.01548 0.92922 0.99827 0.99852 0.86968 0.86889 0.72584 0.81057 0.80721 0.84826 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.80 13.29 21.45 0.28 -58.52 16 2 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 3 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 9 C 0.04 2.13 4.26 29.85 0.13 2.25 16 10 C -0.12 -4.23 5.64 29.85 0.17 -4.06 16 11 C 0.51 18.27 7.67 87.66 0.67 18.94 16 12 O -0.56 -26.09 13.41 -3.05 -0.04 -26.13 16 13 N -0.66 -16.06 5.34 -303.57 -1.62 -17.68 16 14 C 0.15 3.83 6.30 38.13 0.24 4.07 16 15 C -0.12 -2.01 9.96 22.43 0.22 -1.79 16 16 C -0.07 -1.03 10.03 22.23 0.22 -0.81 16 17 C -0.15 -2.96 8.68 22.44 0.19 -2.77 16 18 C -0.10 -2.63 6.10 22.61 0.14 -2.49 16 19 S -0.04 -0.96 21.96 -56.49 -1.24 -2.20 16 20 C 0.46 9.40 2.98 113.37 0.34 9.74 16 21 F -0.16 -3.32 15.62 44.97 0.70 -2.62 16 22 F -0.15 -2.94 17.36 44.97 0.78 -2.15 16 23 F -0.16 -3.03 15.62 44.97 0.70 -2.33 16 24 C -0.12 -3.54 8.44 22.53 0.19 -3.35 16 25 H 0.26 15.41 8.31 -92.72 -0.77 14.64 16 26 H -0.02 -1.02 8.10 -2.38 -0.02 -1.04 16 27 H -0.02 -1.04 8.10 -2.39 -0.02 -1.05 16 28 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 29 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.43 6.47 8.82 -92.70 -0.82 5.66 16 31 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.13 2.36 4.54 -2.91 -0.01 2.35 16 34 H 0.12 4.37 6.22 -2.91 -0.02 4.35 16 Total: -1.00 -75.67 322.33 5.16 -70.51 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.35 Total: 5.35 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 3.21 Total: -9.79 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -1.33 Total: -76.20 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.04 Total: -26.13 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 2.19 Total: -7.10 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -1.24 Total: -2.20 kcal Total: -75.67 5.16 -70.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863617841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.042 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds