Wall clock time and date at job start Tue Mar 31 2020 12:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46923 * 179.97438 * 18 17 15 20 20 S 1.81400 * 109.46867 * 179.97438 * 19 18 17 21 21 C 1.81407 * 103.00019 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46484 * 60.00120 * 21 20 19 23 23 F 1.39900 * 109.47215 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.47212 * 300.00391 * 21 20 19 25 25 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 27 27 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 28 28 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 29 29 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 30 30 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 31 31 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 32 32 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 33 33 H 1.09001 * 109.47351 * 299.99529 * 19 18 17 34 34 H 1.09001 * 109.47316 * 59.99830 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9753 -5.6730 -3.7563 20 16 4.2526 -6.8539 -4.9284 21 6 5.7089 -7.6869 -5.6185 22 9 6.4175 -8.3160 -4.5893 23 9 5.2995 -8.6429 -6.5543 24 9 6.5326 -6.7446 -6.2436 25 1 -0.4850 0.8400 -0.0004 26 1 3.3594 0.3863 1.6623 27 1 5.7821 0.3556 2.0405 28 1 7.2121 -1.2443 0.8416 29 1 6.2399 -2.8385 -0.7537 30 1 5.4035 -3.8783 -2.0213 31 1 3.1964 -5.5609 -2.5460 32 1 3.2877 -4.3366 -3.8349 33 1 5.6360 -4.9894 -4.2896 34 1 5.5453 -6.2139 -3.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864892183.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:30 Heat of formation + Delta-G solvation = -172.987177 kcal Electronic energy + Delta-G solvation = -23328.209340 eV Core-core repulsion = 19129.873702 eV Total energy + Delta-G solvation = -4198.335638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.37500 -49.00826 -48.95474 -40.84771 -38.82750 -36.42205 -35.46371 -32.69674 -32.27251 -30.83455 -27.77153 -27.22943 -24.94050 -23.74646 -22.65878 -21.32498 -20.52785 -19.81650 -19.78735 -19.44322 -18.37906 -17.44710 -17.06072 -16.78167 -16.37786 -15.85608 -15.82870 -15.80380 -15.78071 -15.37220 -15.30474 -15.17050 -15.09174 -15.05595 -14.48347 -14.24279 -13.83391 -13.50155 -13.42169 -13.30110 -12.96535 -12.68064 -12.49555 -12.18927 -12.02641 -11.72221 -11.60534 -11.07789 -10.36596 -10.09700 -9.62691 -9.51231 -9.40475 -8.81724 -6.48094 -1.09938 0.34595 0.46916 0.85485 1.24826 1.38109 1.47117 1.89454 2.10286 2.24553 2.44874 2.71646 2.71787 2.72050 3.40085 3.54132 3.70752 4.19607 4.23545 4.26980 4.45529 4.56359 4.68927 4.76795 4.87233 5.02637 5.30738 5.46921 5.49033 5.69576 5.88116 5.97495 6.28304 6.48517 6.64925 6.79744 6.88992 7.59894 8.22483 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002812 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.715428 B = 9954.312685 C =10744.301334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.249 1.249 5 H -0.247 1.247 6 H -0.281 1.281 7 C -0.451 4.451 8 H 0.073 0.927 9 C 0.100 3.900 10 C -0.248 4.248 11 C -0.062 4.062 12 C -0.231 4.231 13 C -0.037 4.037 14 C -0.266 4.266 15 C 0.557 3.443 16 O -0.575 6.575 17 N -0.721 5.721 18 C 0.143 3.857 19 C -0.100 4.100 20 S -0.156 6.156 21 C 0.471 3.529 22 F -0.167 7.167 23 F -0.153 7.153 24 F -0.168 7.168 25 H 0.293 0.707 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.413 0.587 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.333 -10.001 -8.242 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.174 1.174 5 H -0.171 1.171 6 H -0.208 1.208 7 C -0.480 4.480 8 H 0.091 0.909 9 C 0.096 3.904 10 C -0.267 4.267 11 C -0.080 4.080 12 C -0.250 4.250 13 C -0.055 4.055 14 C -0.271 4.271 15 C 0.350 3.650 16 O -0.455 6.455 17 N -0.378 5.378 18 C 0.018 3.982 19 C -0.248 4.248 20 S 0.065 5.935 21 C 0.309 3.691 22 F -0.149 7.149 23 F -0.134 7.134 24 F -0.149 7.149 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.153 0.847 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.251 0.749 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.184 -10.210 -8.650 19.500 hybrid contribution 1.045 0.586 0.174 1.211 sum 15.229 -9.624 -8.475 19.909 Atomic orbital electron populations 1.69625 1.09543 1.31361 1.37037 1.27116 0.95529 1.04470 0.90718 0.85489 0.79518 0.75997 0.80075 1.17418 1.17095 1.20821 1.19969 0.92553 0.95566 1.39897 0.90887 1.17808 0.92512 0.90951 0.89101 1.21256 0.96449 1.05179 1.03820 1.21260 0.92465 0.97114 0.97189 1.20964 1.00160 1.00587 1.03254 1.21255 0.92038 0.96709 0.95527 1.19745 0.94605 1.06442 1.06267 1.18506 0.85868 0.80356 0.80301 1.90756 1.16617 1.69984 1.68147 1.45572 1.10608 1.38813 1.42815 1.20651 0.94359 0.91143 0.92047 1.23794 1.01280 0.99463 1.00304 1.88512 1.05694 1.46689 1.52648 1.22583 0.87571 0.80120 0.78790 1.93329 1.80510 1.83216 1.57862 1.93255 1.89980 1.64458 1.65727 1.93330 1.74575 1.63827 1.83214 0.89664 0.88205 0.84743 0.83737 0.83696 0.74896 0.91693 0.91900 0.85494 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.14 13.92 21.88 0.30 -48.83 16 2 C 0.04 1.99 5.47 85.37 0.47 2.46 16 3 Si 0.97 43.05 24.51 68.60 1.68 44.73 16 4 H -0.25 -10.17 6.76 99.48 0.67 -9.50 16 5 H -0.25 -10.99 6.72 99.48 0.67 -10.32 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.45 -26.60 8.31 23.41 0.19 -26.41 16 8 H 0.07 4.93 5.96 -2.91 -0.02 4.91 16 9 C 0.10 5.10 5.03 -21.11 -0.11 4.99 16 10 C -0.25 -11.06 7.00 22.72 0.16 -10.90 16 11 C -0.06 -2.20 10.01 22.26 0.22 -1.98 16 12 C -0.23 -7.17 10.03 22.41 0.22 -6.95 16 13 C -0.04 -1.20 9.52 22.50 0.21 -0.99 16 14 C -0.27 -11.60 5.92 -19.70 -0.12 -11.72 16 15 C 0.56 24.06 7.72 86.67 0.67 24.73 16 16 O -0.57 -31.19 13.54 -4.05 -0.05 -31.25 16 17 N -0.72 -20.82 5.51 -466.35 -2.57 -23.39 16 18 C 0.14 3.59 5.68 86.38 0.49 4.08 16 19 C -0.10 -1.55 6.02 71.98 0.43 -1.11 16 20 S -0.16 -2.77 21.77 -56.49 -1.23 -4.00 16 21 C 0.47 7.83 3.51 113.37 0.40 8.23 16 22 F -0.17 -2.76 17.34 44.97 0.78 -1.98 16 23 F -0.15 -2.75 17.36 44.97 0.78 -1.96 16 24 F -0.17 -2.79 17.34 44.97 0.78 -2.01 16 25 H 0.29 15.14 8.29 -92.71 -0.77 14.37 16 26 H 0.10 4.47 5.00 -2.91 -0.01 4.46 16 27 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.15 3.23 6.42 -2.91 -0.02 3.21 16 30 H 0.41 8.46 6.52 -92.71 -0.60 7.86 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -71.22 317.01 4.23 -66.99 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.50 Total: 17.27 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 3.25 Total: -15.57 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -2.26 Total: -72.22 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.25 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 2.34 Total: -5.96 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.68 Total: 44.73 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -1.23 Total: -4.00 kcal Total: -71.22 4.23 -66.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864892183.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.996 kcal (2) G-P(sol) polarization free energy of solvation -71.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds