Wall clock time and date at job start Tue Mar 31 2020 12:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99738 * 2 1 4 4 H 1.48501 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47350 * 300.00448 * 3 2 1 6 6 H 1.48494 * 109.46954 * 60.00472 * 3 2 1 7 7 C 1.37879 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99627 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.46879 * 179.97438 * 9 7 2 11 11 O 1.42100 * 108.57675 * 65.50966 * 10 9 7 12 12 O 1.42095 * 108.57576 * 294.48680 * 10 9 7 13 13 C 1.81394 * 101.91886 * 179.97438 * 10 9 7 14 14 C 1.50706 * 109.46728 * 179.97438 * 13 10 9 15 15 O 1.21286 * 120.00182 * 0.02562 * 14 13 10 16 16 N 1.34785 * 119.99584 * 180.02562 * 14 13 10 17 17 C 1.40016 * 119.99395 * 175.38073 * 16 14 13 18 18 C 1.38868 * 120.04241 * 35.08605 * 17 16 14 19 19 C 1.38119 * 120.00204 * 180.02562 * 18 17 16 20 20 C 1.38431 * 120.07112 * 0.02562 * 19 18 17 21 21 F 1.35107 * 119.96318 * 179.97438 * 20 19 18 22 22 C 1.38660 * 120.06969 * 0.02562 * 20 19 18 23 23 F 1.35103 * 120.00185 * 180.02562 * 22 20 19 24 24 C 1.38328 * 119.99915 * 359.72035 * 22 20 19 25 25 H 0.96993 * 120.00252 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47404 * 59.99960 * 9 7 2 27 27 H 1.09000 * 109.46908 * 299.99753 * 9 7 2 28 28 H 1.09005 * 109.47185 * 60.00183 * 13 10 9 29 29 H 1.08999 * 109.47311 * 299.99974 * 13 10 9 30 30 H 0.96996 * 119.99956 * 355.38292 * 16 14 13 31 31 H 1.07997 * 119.99382 * 0.02640 * 18 17 16 32 32 H 1.08002 * 119.96682 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.02993 * 180.27981 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0021 11 8 3.1495 -3.8597 1.2232 12 8 3.1475 -3.8586 -1.2284 13 6 1.3244 -5.3161 -0.0011 14 6 2.1449 -6.5802 -0.0028 15 8 3.3561 -6.5172 -0.0041 16 7 1.5325 -7.7810 -0.0029 17 6 2.2911 -8.9536 -0.1022 18 6 3.5418 -9.0253 0.4970 19 6 4.2897 -10.1823 0.3981 20 6 3.7942 -11.2711 -0.2985 21 9 4.5279 -12.4016 -0.3943 22 6 2.5462 -11.2024 -0.8989 23 9 2.0637 -12.2660 -1.5779 24 6 1.7925 -10.0469 -0.7972 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 0.6946 -5.2909 -0.8904 29 1 0.6966 -5.2911 0.8896 30 1 0.5664 -7.8326 0.0657 31 1 3.9296 -8.1763 1.0404 32 1 5.2625 -10.2373 0.8640 33 1 0.8185 -9.9944 -1.2608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:11 Heat of formation + Delta-G solvation = -192.649232 kcal Electronic energy + Delta-G solvation = -23485.659578 eV Core-core repulsion = 19274.098539 eV Total energy + Delta-G solvation = -4211.561039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.56155 -49.63840 -41.87214 -39.54078 -37.76461 -36.78929 -36.03057 -35.36008 -32.26740 -31.97174 -30.98418 -29.67769 -25.58923 -24.59989 -24.22243 -22.06907 -19.95521 -19.45691 -19.05140 -18.85883 -18.60308 -17.92490 -17.44480 -17.41086 -17.25813 -16.98846 -16.54619 -16.20726 -16.06888 -16.05542 -15.55397 -15.16360 -15.05825 -14.44791 -14.32672 -14.05994 -13.97959 -13.76771 -13.39135 -13.35421 -12.90706 -12.83738 -12.71111 -12.53964 -12.51111 -11.96431 -11.74654 -11.63714 -11.38485 -10.92485 -10.74548 -10.16402 -9.37750 -8.39633 -6.53788 -0.83028 -0.32322 -0.13508 1.11065 1.38508 1.40657 1.53670 1.55410 2.17374 2.27142 2.33756 2.71897 2.95141 2.95930 3.21327 3.29973 3.37594 3.51891 3.81300 3.93753 4.02143 4.14651 4.29799 4.60623 4.71818 4.80491 4.83118 4.93530 4.98400 5.08482 5.40891 5.63198 5.78430 6.00956 6.55319 6.72597 7.16534 8.72651 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.042890 B = 0.002531 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.682259 B =11060.038118 C =11414.582051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.563 4.563 8 H 0.056 0.944 9 C -0.419 4.419 10 S 2.430 3.570 11 O -0.983 6.983 12 O -0.986 6.986 13 C -0.643 4.643 14 C 0.541 3.459 15 O -0.551 6.551 16 N -0.641 5.641 17 C 0.157 3.843 18 C -0.117 4.117 19 C -0.100 4.100 20 C 0.041 3.959 21 F -0.137 7.137 22 C 0.079 3.921 23 F -0.130 7.130 24 C -0.134 4.134 25 H 0.274 0.726 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.208 0.792 29 H 0.210 0.790 30 H 0.442 0.558 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 -20.781 0.529 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.602 4.602 8 H 0.074 0.926 9 C -0.553 4.553 10 S 2.616 3.384 11 O -0.981 6.981 12 O -0.983 6.983 13 C -0.772 4.772 14 C 0.329 3.671 15 O -0.429 6.429 16 N -0.289 5.289 17 C 0.062 3.938 18 C -0.137 4.137 19 C -0.119 4.119 20 C 0.020 3.980 21 F -0.115 7.115 22 C 0.058 3.942 23 F -0.109 7.109 24 C -0.155 4.155 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.225 0.775 29 H 0.227 0.773 30 H 0.284 0.716 31 H 0.162 0.838 32 H 0.185 0.815 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.247 -20.680 0.487 20.807 hybrid contribution -0.730 0.417 -0.134 0.852 sum -2.977 -20.262 0.353 20.483 Atomic orbital electron populations 1.69973 1.07005 1.28731 1.48480 1.25669 0.95968 1.02548 0.93186 0.85530 0.79033 0.78714 0.78840 1.19462 1.19161 1.19096 1.20774 0.92951 0.91028 1.55413 0.92565 1.27636 1.10387 1.09707 1.07540 1.07614 0.78847 0.78218 0.73684 1.93426 1.70787 1.86735 1.47119 1.93428 1.70924 1.86747 1.47185 1.30770 1.17868 1.10367 1.18233 1.19840 0.87446 0.85191 0.74668 1.90877 1.15641 1.87215 1.49152 1.43105 1.12099 1.02064 1.71613 1.17541 0.92920 0.86561 0.96771 1.21389 0.94434 0.98404 0.99500 1.21137 1.02002 0.90306 0.98476 1.17856 0.90695 0.85000 1.04419 1.91511 1.76370 1.48818 1.94845 1.17403 0.92687 0.86065 0.98049 1.91535 1.87769 1.54085 1.77514 1.20887 1.03274 0.90337 1.00963 0.91695 0.88589 0.88479 0.77457 0.77256 0.71634 0.83773 0.81492 0.79839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.55 13.29 21.45 0.28 -48.26 16 2 C 0.03 1.58 5.46 84.65 0.46 2.04 16 3 Si 0.96 42.03 29.54 68.60 2.03 44.05 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.56 -30.51 9.13 25.60 0.23 -30.28 16 8 H 0.06 3.14 7.71 -2.92 -0.02 3.12 16 9 C -0.42 -18.24 5.56 71.24 0.40 -17.85 16 10 S 2.43 94.70 3.88 -56.49 -0.22 94.48 16 11 O -0.98 -45.67 17.95 -125.75 -2.26 -47.93 16 12 O -0.99 -46.37 17.95 -125.75 -2.26 -48.62 16 13 C -0.64 -13.30 6.29 71.24 0.45 -12.85 16 14 C 0.54 13.26 7.69 87.66 0.67 13.93 16 15 O -0.55 -19.25 13.06 -0.18 0.00 -19.25 16 16 N -0.64 -9.70 5.34 -303.46 -1.62 -11.32 16 17 C 0.16 2.79 6.30 38.12 0.24 3.03 16 18 C -0.12 -2.47 8.69 22.39 0.19 -2.28 16 19 C -0.10 -1.86 10.02 22.29 0.22 -1.63 16 20 C 0.04 0.81 7.30 22.42 0.16 0.97 16 21 F -0.14 -2.97 17.18 44.97 0.77 -2.19 16 22 C 0.08 1.43 7.30 22.39 0.16 1.59 16 23 F -0.13 -2.54 17.18 44.97 0.77 -1.77 16 24 C -0.13 -1.88 9.94 22.43 0.22 -1.66 16 25 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 26 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 27 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 28 H 0.21 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.21 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.44 2.37 8.82 -92.71 -0.82 1.55 16 31 H 0.14 3.60 6.22 -2.91 -0.02 3.58 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -81.82 320.11 1.29 -80.53 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 0.37 Total: 5.28 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 3.42 Total: -44.99 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -1.34 Total: -59.59 kcal Atomic # 8 Polarization: -111.29 SS G_CDS: -4.52 Total: -115.80 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 1.55 Total: -3.96 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 94.70 SS G_CDS: -0.22 Total: 94.48 kcal Total: -81.82 1.29 -80.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.120 kcal (2) G-P(sol) polarization free energy of solvation -81.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds