Wall clock time and date at job start Tue Mar 31 2020 12:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99880 * 2 1 4 4 H 1.48497 * 109.46902 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46863 * 299.99775 * 3 2 1 6 6 H 1.48499 * 109.46875 * 59.99426 * 3 2 1 7 7 C 1.37872 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.47304 * 180.02562 * 10 9 7 12 12 S 1.81391 * 109.47129 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54560 * 68.37507 * 12 11 10 14 14 O 1.42102 * 110.54626 * 291.62241 * 12 11 10 15 15 N 1.65607 * 104.44846 * 180.02562 * 12 11 10 16 16 C 1.46500 * 120.00158 * 64.99920 * 15 12 11 17 17 C 1.50700 * 109.47272 * 165.00109 * 16 15 12 18 18 C 1.38344 * 119.98028 * 94.71985 * 17 16 15 19 19 N 1.32144 * 120.01716 * 180.27311 * 18 17 16 20 20 C 1.32245 * 119.98439 * 0.02562 * 19 18 17 21 21 Cl 1.73605 * 120.01974 * 180.02562 * 20 19 18 22 22 C 1.38526 * 119.96318 * 359.97438 * 20 19 18 23 23 N 1.32106 * 119.98373 * 0.02562 * 22 20 19 24 24 H 0.96997 * 120.00099 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47246 * 60.00330 * 9 7 2 26 26 H 1.08999 * 109.47330 * 299.99749 * 9 7 2 27 27 H 1.08995 * 109.47057 * 60.00555 * 10 9 7 28 28 H 1.09005 * 109.47510 * 300.00139 * 10 9 7 29 29 H 1.08995 * 109.46740 * 60.00202 * 11 10 9 30 30 H 1.09005 * 109.46821 * 300.00402 * 11 10 9 31 31 H 0.96994 * 119.99642 * 245.00177 * 15 12 11 32 32 H 1.09003 * 109.46718 * 44.99795 * 16 15 12 33 33 H 1.08999 * 109.46721 * 285.00448 * 16 15 12 34 34 H 1.08002 * 119.99617 * 0.25861 * 18 17 16 35 35 H 1.08002 * 120.00299 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 16 2.6593 -6.3658 0.0007 13 8 3.3552 -6.4262 1.2381 14 8 3.3570 -6.4261 -1.2358 15 7 1.7090 -7.7220 -0.0008 16 6 0.8507 -8.0138 -1.1517 17 6 0.3843 -9.4451 -1.0805 18 6 -0.8371 -9.7463 -0.5049 19 7 -1.2444 -11.0016 -0.4372 20 6 -0.4838 -11.9701 -0.9194 21 17 -1.0183 -13.6195 -0.8315 22 6 0.7391 -11.6676 -1.4955 23 7 1.1449 -10.4122 -1.5625 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8898 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8905 28 1 2.8722 -3.6042 -0.8895 29 1 0.8542 -5.0446 -0.8903 30 1 0.8534 -5.0451 0.8897 31 1 1.7206 -8.3231 0.7603 32 1 1.4133 -7.8603 -2.0726 33 1 -0.0130 -7.3491 -1.1385 34 1 -1.4579 -8.9554 -0.1106 35 1 1.3609 -12.4581 -1.8891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921529708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:17 Heat of formation + Delta-G solvation = -42.651216 kcal Electronic energy + Delta-G solvation = -21162.355906 eV Core-core repulsion = 17541.388701 eV Total energy + Delta-G solvation = -3620.967205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.054 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78115 -37.48612 -37.00472 -36.12361 -35.79223 -34.72775 -34.70962 -32.22679 -31.83696 -27.86480 -27.12653 -25.41867 -23.78378 -23.29101 -20.74621 -19.37887 -18.55734 -18.04559 -17.74048 -17.11744 -16.56405 -16.05813 -15.73893 -15.65000 -15.07680 -14.63620 -14.51203 -14.17815 -13.85870 -13.40348 -12.72223 -12.64082 -12.32264 -12.28974 -12.07794 -12.00805 -11.92197 -11.88795 -11.83802 -11.70409 -11.29367 -10.96186 -10.88227 -10.47327 -10.00278 -9.93366 -9.78102 -9.74995 -9.38439 -9.13137 -8.44103 -6.08967 -4.11931 -0.12769 0.33527 0.45444 1.07134 2.62969 3.03477 3.27543 3.33273 3.35350 3.40130 3.61240 3.71868 3.87351 4.10536 4.30774 4.39130 4.40192 4.78821 4.86627 5.02655 5.10448 5.15083 5.27796 5.40925 5.52168 5.82231 6.21477 6.39257 6.46276 6.65868 6.82598 6.99856 7.53096 7.62523 7.89153 8.29413 8.94604 9.53162 11.02239 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.002217 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.159760 B =12626.709635 C =13206.076820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.107 4.107 11 C -0.608 4.608 12 S 2.601 3.399 13 O -0.959 6.959 14 O -0.956 6.956 15 N -1.121 6.121 16 C 0.169 3.831 17 C 0.073 3.927 18 C 0.089 3.911 19 N -0.430 5.430 20 C 0.123 3.877 21 Cl -0.010 7.010 22 C 0.077 3.923 23 N -0.402 5.402 24 H 0.261 0.739 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.415 0.585 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.186 0.814 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 -25.335 -2.341 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.697 3.303 13 O -0.949 6.949 14 O -0.946 6.946 15 N -0.878 5.878 16 C 0.042 3.958 17 C -0.069 4.069 18 C -0.071 4.071 19 N -0.147 5.147 20 C -0.045 4.045 21 Cl 0.018 6.982 22 C -0.085 4.085 23 N -0.118 5.118 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.249 0.751 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.203 0.797 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.611 -25.274 -2.508 25.532 hybrid contribution -0.531 0.598 0.382 0.886 sum -3.142 -24.676 -2.127 24.966 Atomic orbital electron populations 1.69962 1.06080 1.26704 1.50681 1.25022 0.94897 0.99405 0.95092 0.86500 0.80201 0.83496 0.77624 1.19593 1.20938 1.20953 1.21288 0.93315 0.90869 1.50943 0.92294 1.19070 0.93524 0.90457 0.97753 1.21517 0.99429 0.91558 1.02102 1.30552 1.16327 1.15734 1.11376 1.05411 0.75572 0.75038 0.74322 1.93592 1.70401 1.85760 1.45140 1.93583 1.69938 1.85515 1.45577 1.55779 1.62398 1.42898 1.26723 1.20114 0.95674 0.89017 0.91044 1.22338 0.92392 0.96737 0.95445 1.23788 0.94981 0.93146 0.95222 1.67894 1.32745 1.00128 1.13891 1.22989 0.93093 0.89775 0.98636 1.98444 1.90711 1.12487 1.96541 1.23722 0.93363 0.95008 0.96379 1.68482 1.31567 0.99350 1.12355 0.92936 0.96080 0.96087 0.91507 0.91458 0.85338 0.85085 0.75130 0.87483 0.88796 0.79698 0.80043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.47 9.11 -34.45 -0.31 -14.78 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.74 4.97 -27.89 -0.14 0.60 16 10 C -0.11 -2.03 5.16 -26.73 -0.14 -2.17 16 11 C -0.61 -8.21 6.07 37.16 0.23 -7.99 16 12 S 2.60 34.40 5.46 -107.50 -0.59 33.81 16 13 O -0.96 -15.84 18.08 -57.54 -1.04 -16.88 16 14 O -0.96 -15.67 17.49 -57.54 -1.01 -16.68 16 15 N -1.12 -10.37 5.88 -11.66 -0.07 -10.44 16 16 C 0.17 1.30 6.46 -5.19 -0.03 1.26 16 17 C 0.07 0.58 6.18 -82.42 -0.51 0.08 16 18 C 0.09 0.63 10.86 -17.38 -0.19 0.45 16 19 N -0.43 -3.80 10.49 -10.17 -0.11 -3.90 16 20 C 0.12 0.99 7.29 -17.27 -0.13 0.86 16 21 Cl -0.01 -0.07 29.13 -51.86 -1.51 -1.58 16 22 C 0.08 0.57 11.01 -17.33 -0.19 0.38 16 23 N -0.40 -3.71 10.42 -9.26 -0.10 -3.81 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.13 1.54 8.14 -51.92 -0.42 1.11 16 31 H 0.42 3.33 8.61 -34.47 -0.30 3.04 16 32 H 0.11 0.91 7.69 -51.93 -0.40 0.51 16 33 H 0.09 0.42 8.05 -51.93 -0.42 0.00 16 34 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -36.29 339.04 -9.14 -45.43 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.04 Total: -2.18 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -1.51 Total: -19.81 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.46 Total: -43.47 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -2.05 Total: -33.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 34.40 SS G_CDS: -0.59 Total: 33.81 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.29 -9.14 -45.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921529708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.781 kcal (2) G-P(sol) polarization free energy of solvation -36.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds