Wall clock time and date at job start Tue Mar 31 2020 12:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99880 * 2 1 4 4 H 1.48497 * 109.46902 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46863 * 299.99775 * 3 2 1 6 6 H 1.48499 * 109.46875 * 59.99426 * 3 2 1 7 7 C 1.37872 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.47304 * 180.02562 * 10 9 7 12 12 S 1.81391 * 109.47129 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54560 * 68.37507 * 12 11 10 14 14 O 1.42102 * 110.54626 * 291.62241 * 12 11 10 15 15 N 1.65607 * 104.44846 * 180.02562 * 12 11 10 16 16 C 1.46500 * 120.00158 * 64.99920 * 15 12 11 17 17 C 1.50700 * 109.47272 * 165.00109 * 16 15 12 18 18 C 1.38344 * 119.98028 * 94.71985 * 17 16 15 19 19 N 1.32144 * 120.01716 * 180.27311 * 18 17 16 20 20 C 1.32245 * 119.98439 * 0.02562 * 19 18 17 21 21 Cl 1.73605 * 120.01974 * 180.02562 * 20 19 18 22 22 C 1.38526 * 119.96318 * 359.97438 * 20 19 18 23 23 N 1.32106 * 119.98373 * 0.02562 * 22 20 19 24 24 H 0.96997 * 120.00099 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47246 * 60.00330 * 9 7 2 26 26 H 1.08999 * 109.47330 * 299.99749 * 9 7 2 27 27 H 1.08995 * 109.47057 * 60.00555 * 10 9 7 28 28 H 1.09005 * 109.47510 * 300.00139 * 10 9 7 29 29 H 1.08995 * 109.46740 * 60.00202 * 11 10 9 30 30 H 1.09005 * 109.46821 * 300.00402 * 11 10 9 31 31 H 0.96994 * 119.99642 * 245.00177 * 15 12 11 32 32 H 1.09003 * 109.46718 * 44.99795 * 16 15 12 33 33 H 1.08999 * 109.46721 * 285.00448 * 16 15 12 34 34 H 1.08002 * 119.99617 * 0.25861 * 18 17 16 35 35 H 1.08002 * 120.00299 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 16 2.6593 -6.3658 0.0007 13 8 3.3552 -6.4262 1.2381 14 8 3.3570 -6.4261 -1.2358 15 7 1.7090 -7.7220 -0.0008 16 6 0.8507 -8.0138 -1.1517 17 6 0.3843 -9.4451 -1.0805 18 6 -0.8371 -9.7463 -0.5049 19 7 -1.2444 -11.0016 -0.4372 20 6 -0.4838 -11.9701 -0.9194 21 17 -1.0183 -13.6195 -0.8315 22 6 0.7391 -11.6676 -1.4955 23 7 1.1449 -10.4122 -1.5625 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8898 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8905 28 1 2.8722 -3.6042 -0.8895 29 1 0.8542 -5.0446 -0.8903 30 1 0.8534 -5.0451 0.8897 31 1 1.7206 -8.3231 0.7603 32 1 1.4133 -7.8603 -2.0726 33 1 -0.0130 -7.3491 -1.1385 34 1 -1.4579 -8.9554 -0.1106 35 1 1.3609 -12.4581 -1.8891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921529708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:17 Heat of formation + Delta-G solvation = -71.340069 kcal Electronic energy + Delta-G solvation = -21163.599948 eV Core-core repulsion = 17541.388701 eV Total energy + Delta-G solvation = -3622.211247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.054 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.34657 -38.21503 -38.01261 -37.06536 -36.74084 -36.41956 -35.32245 -34.12659 -32.45839 -29.61218 -27.76399 -25.97153 -25.59034 -23.90039 -22.38794 -20.40152 -19.16612 -18.83360 -18.61033 -18.42545 -17.85619 -17.12390 -16.73517 -16.47562 -16.39300 -15.98136 -15.50053 -15.05740 -14.57059 -14.46578 -14.08883 -13.98598 -13.46971 -13.30144 -13.17895 -13.10589 -12.98692 -12.91226 -12.88215 -12.75289 -12.57364 -12.52333 -12.29626 -12.12765 -11.69515 -11.33558 -11.11999 -10.55149 -10.48816 -10.35332 -10.28945 -8.20841 -6.30694 -0.85763 -0.53076 -0.16288 0.51911 1.40567 1.42073 1.54514 1.76149 2.40358 2.42100 2.73257 2.86999 3.08530 3.13128 3.20884 3.28013 3.57969 3.78086 3.83347 4.00881 4.34671 4.36790 4.45611 4.55225 4.69055 4.74596 5.00017 5.03853 5.12251 5.50017 5.68859 5.83476 5.91061 5.96774 6.23469 6.44199 6.85629 7.38495 8.90522 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.002217 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.159760 B =12626.709635 C =13206.076820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.109 4.109 11 C -0.604 4.604 12 S 2.632 3.368 13 O -0.993 6.993 14 O -0.989 6.989 15 N -1.107 6.107 16 C 0.159 3.841 17 C 0.068 3.932 18 C 0.095 3.905 19 N -0.452 5.452 20 C 0.116 3.884 21 Cl -0.005 7.005 22 C 0.075 3.925 23 N -0.429 5.429 24 H 0.264 0.736 25 H 0.007 0.993 26 H 0.005 0.995 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.424 0.576 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.216 0.784 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -25.757 -2.376 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.588 4.588 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.148 4.148 11 C -0.736 4.736 12 S 2.727 3.273 13 O -0.983 6.983 14 O -0.979 6.979 15 N -0.867 5.867 16 C 0.033 3.967 17 C -0.074 4.074 18 C -0.065 4.065 19 N -0.169 5.169 20 C -0.051 4.051 21 Cl 0.023 6.977 22 C -0.086 4.086 23 N -0.144 5.144 24 H 0.073 0.927 25 H 0.026 0.974 26 H 0.023 0.977 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.259 0.741 32 H 0.116 0.884 33 H 0.152 0.848 34 H 0.233 0.767 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.944 -25.709 -2.541 26.002 hybrid contribution -0.476 0.647 0.375 0.886 sum -3.420 -25.063 -2.166 25.388 Atomic orbital electron populations 1.70061 1.07477 1.27739 1.51577 1.25889 0.95806 1.03066 0.94767 0.85478 0.79094 0.79151 0.77829 1.18921 1.20298 1.20380 1.21789 0.93715 0.92677 1.50664 0.92343 1.18972 0.94033 0.91599 0.96177 1.21324 0.98747 0.92695 1.02053 1.30472 1.16429 1.12719 1.13964 1.04228 0.75113 0.75202 0.72717 1.93543 1.71788 1.86472 1.46521 1.93544 1.71209 1.86199 1.46901 1.55312 1.62284 1.41478 1.27666 1.20445 0.96608 0.89866 0.89792 1.22406 0.92752 0.96537 0.95696 1.24233 0.94814 0.93259 0.94211 1.67934 1.33375 1.00903 1.14650 1.23135 0.93330 0.90001 0.98670 1.98442 1.90666 1.12090 1.96504 1.24032 0.93440 0.95047 0.96053 1.68474 1.32550 1.00206 1.13187 0.92691 0.97441 0.97673 0.91809 0.91535 0.82634 0.82898 0.74071 0.88371 0.84835 0.76709 0.77944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.55 -30.43 9.11 25.60 0.23 -30.20 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.11 -4.09 5.16 30.60 0.16 -3.93 16 11 C -0.60 -15.11 6.07 71.99 0.44 -14.68 16 12 S 2.63 65.79 5.46 -56.49 -0.31 65.48 16 13 O -0.99 -31.90 18.08 -127.65 -2.31 -34.21 16 14 O -0.99 -31.48 17.49 -127.65 -2.23 -33.71 16 15 N -1.11 -18.03 5.88 -190.79 -1.12 -19.15 16 16 C 0.16 2.04 6.46 85.63 0.55 2.59 16 17 C 0.07 0.95 6.18 42.54 0.26 1.22 16 18 C 0.10 1.12 10.86 84.67 0.92 2.04 16 19 N -0.45 -7.22 10.49 -186.09 -1.95 -9.17 16 20 C 0.12 1.72 7.29 84.70 0.62 2.33 16 21 Cl -0.01 -0.07 29.13 -2.72 -0.08 -0.15 16 22 C 0.08 1.03 11.01 84.72 0.93 1.96 16 23 N -0.43 -7.32 10.42 -183.20 -1.91 -9.23 16 24 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 26 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.15 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.42 5.88 8.61 -96.75 -0.83 5.05 16 32 H 0.10 1.49 7.69 -2.39 -0.02 1.47 16 33 H 0.13 0.65 8.05 -2.39 -0.02 0.63 16 34 H 0.22 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -78.35 339.04 -2.58 -80.93 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.29 Total: 4.11 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 4.72 Total: -36.39 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -4.70 Total: -91.54 kcal Atomic # 8 Polarization: -63.38 SS G_CDS: -4.54 Total: -67.92 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 65.79 SS G_CDS: -0.31 Total: 65.48 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.08 Total: -0.15 kcal Total: -78.35 -2.58 -80.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921529708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.591 kcal (2) G-P(sol) polarization free energy of solvation -78.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds