Wall clock time and date at job start Tue Mar 31 2020 12:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48500 * 109.46879 * 239.99461 * 3 2 1 5 5 H 1.48494 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47151 * 119.99873 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.39006 * 119.99859 * 180.02562 * 12 11 10 14 14 N 1.32445 * 119.69510 * 359.97438 * 13 12 11 15 15 C 1.32032 * 121.60357 * 180.02562 * 14 13 12 16 16 Cl 1.73605 * 119.58743 * 180.02562 * 15 14 13 17 17 C 1.38243 * 120.82423 * 0.02562 * 15 14 13 18 18 C 1.38772 * 119.31384 * 359.97438 * 17 15 14 19 19 C 1.38392 * 118.52112 * 359.72908 * 18 17 15 20 20 S 1.76204 * 120.43558 * 180.26268 * 19 18 17 21 21 N 1.65607 * 107.21489 * 115.27199 * 20 19 18 22 22 O 1.42095 * 106.40084 * 228.81391 * 20 19 18 23 23 O 1.42097 * 106.40040 * 1.73485 * 20 19 18 24 24 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 29 29 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 30 30 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 31 31 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 32 32 H 1.07994 * 120.34174 * 179.97438 * 17 15 14 33 33 H 1.07998 * 120.74026 * 180.02562 * 18 17 15 34 34 H 0.96998 * 119.99722 * 0.02562 * 21 20 19 35 35 H 0.96996 * 119.99529 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9687 -7.4112 0.0019 14 7 0.6653 -7.6463 0.0020 15 6 0.1839 -8.8757 0.0026 16 17 -1.5344 -9.1235 0.0020 17 6 1.0311 -9.9681 0.0037 18 6 2.4036 -9.7635 0.0037 19 6 2.8779 -8.4634 -0.0033 20 16 4.6110 -8.1455 -0.0106 21 7 4.9662 -7.3986 -1.4454 22 8 4.8473 -7.1861 1.0105 23 8 5.2513 -9.4134 -0.0490 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8718 -3.6044 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 0.8537 -5.0446 0.8914 30 1 0.8531 -5.0451 -0.8886 31 1 3.3857 -5.9235 0.0014 32 1 0.6289 -10.9704 0.0046 33 1 3.0865 -10.6002 0.0041 34 1 4.2610 -7.2209 -2.0872 35 1 5.8795 -7.1390 -1.6439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157642261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:37 Heat of formation + Delta-G solvation = -54.147825 kcal Electronic energy + Delta-G solvation = -21961.428169 eV Core-core repulsion = 18339.962434 eV Total energy + Delta-G solvation = -3621.465736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.054 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69023 -37.67467 -37.14349 -36.30680 -36.10327 -33.85497 -33.44764 -32.97627 -31.87540 -29.73279 -26.62398 -24.61275 -23.69091 -22.31096 -20.58761 -19.89484 -18.72576 -18.16277 -17.65390 -17.26039 -16.34791 -16.26880 -15.80647 -15.49974 -15.34177 -14.63486 -14.43039 -14.39676 -13.80352 -13.57947 -12.68318 -12.45697 -12.36321 -12.35046 -12.19927 -11.89899 -11.87056 -11.68496 -11.52272 -10.96792 -10.84078 -10.78371 -10.63389 -10.62614 -10.19565 -9.94859 -9.81776 -9.51639 -9.18221 -8.39630 -8.26195 -6.04507 -4.07621 0.03430 0.29673 0.99651 1.37542 2.76016 2.89435 3.11814 3.30984 3.35718 3.37995 3.38415 4.02723 4.23200 4.42547 4.63792 4.80845 4.87000 5.27477 5.31456 5.40137 5.52119 5.65712 5.68329 5.89340 6.04687 6.45258 6.50363 6.68949 6.74440 6.90004 6.96724 7.58880 7.64648 7.70510 7.93556 8.34630 8.98475 9.56735 11.06697 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.003523 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.613756 B = 7946.359728 C = 9956.120768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.126 4.126 11 C 0.119 3.881 12 N -0.701 5.701 13 C 0.508 3.492 14 N -0.539 5.539 15 C 0.285 3.715 16 Cl -0.018 7.018 17 C -0.247 4.247 18 C 0.084 3.916 19 C -0.806 4.806 20 S 2.709 3.291 21 N -1.252 6.252 22 O -0.957 6.957 23 O -0.964 6.964 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.418 0.582 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 -22.574 -3.495 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.164 4.164 11 C -0.003 4.003 12 N -0.330 5.330 13 C 0.266 3.734 14 N -0.259 5.259 15 C 0.115 3.885 16 Cl 0.011 6.989 17 C -0.272 4.272 18 C 0.057 3.943 19 C -0.902 4.902 20 S 2.796 3.204 21 N -0.928 5.928 22 O -0.946 6.946 23 O -0.953 6.953 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.253 0.747 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.246 0.754 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.274 -21.800 -2.630 22.371 hybrid contribution 0.377 0.589 -0.605 0.925 sum 4.652 -21.212 -3.235 21.956 Atomic orbital electron populations 1.69951 1.06060 1.26844 1.50417 1.25019 0.94856 0.99296 0.95187 0.86633 0.79561 0.83015 0.78639 1.20245 1.21268 1.20190 1.21159 0.93016 0.90876 1.51176 0.92626 1.19007 0.93709 0.90672 0.97707 1.21968 1.00003 0.93065 1.01381 1.21866 0.91441 0.84259 1.02748 1.45708 1.10917 1.02082 1.74327 1.17453 0.87097 0.85020 0.83838 1.66560 1.13572 1.22985 1.22831 1.21684 0.87598 0.89432 0.89742 1.98443 1.09130 1.95752 1.95615 1.21554 0.93036 0.99484 1.13086 1.21086 0.95413 0.94587 0.83222 1.30631 1.25204 1.00369 1.34029 1.01352 0.72472 0.73846 0.72684 1.53094 1.19473 1.81183 1.39008 1.93648 1.83864 1.61691 1.55349 1.93575 1.73070 1.42519 1.86175 0.92854 0.96226 0.96167 0.92227 0.92551 0.90962 0.90923 0.74722 0.83029 0.81952 0.75437 0.74605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.66 4.97 -27.89 -0.14 0.52 16 10 C -0.13 -2.44 5.27 -26.73 -0.14 -2.58 16 11 C 0.12 1.99 5.69 -4.04 -0.02 1.96 16 12 N -0.70 -10.00 5.53 -60.43 -0.33 -10.33 16 13 C 0.51 6.90 7.44 -155.01 -1.15 5.74 16 14 N -0.54 -7.73 9.54 -9.55 -0.09 -7.82 16 15 C 0.29 3.40 7.27 -17.46 -0.13 3.28 16 16 Cl -0.02 -0.19 29.10 -51.86 -1.51 -1.70 16 17 C -0.25 -2.29 9.87 -39.38 -0.39 -2.68 16 18 C 0.08 0.78 9.66 -39.33 -0.38 0.40 16 19 C -0.81 -8.96 5.91 -39.22 -0.23 -9.19 16 20 S 2.71 28.03 5.55 -107.50 -0.60 27.43 16 21 N -1.25 -8.58 9.21 60.35 0.56 -8.02 16 22 O -0.96 -13.25 16.31 -57.17 -0.93 -14.19 16 23 O -0.96 -11.59 17.05 -57.17 -0.97 -12.57 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.41 5.44 5.54 -40.82 -0.23 5.22 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.16 1.10 7.43 -52.49 -0.39 0.71 16 34 H 0.42 2.29 8.92 -34.47 -0.31 1.99 16 35 H 0.42 2.08 8.96 -34.47 -0.31 1.77 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -34.63 330.91 -9.91 -44.54 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.73 Total: 2.87 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.99 Total: -15.81 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.87 Total: -51.91 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.91 Total: -26.76 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 28.03 SS G_CDS: -0.60 Total: 27.43 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.63 -9.91 -44.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.604 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds