Wall clock time and date at job start Tue Mar 31 2020 12:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42097 * 110.54646 * 2 1 4 4 O 1.42107 * 110.54092 * 223.24744 * 2 1 3 5 5 C 1.76200 * 104.45113 * 111.62912 * 2 1 3 6 6 C 1.38644 * 120.40728 * 89.99350 * 5 2 1 7 7 C 1.38595 * 118.55014 * 180.27644 * 6 5 2 8 8 N 1.32277 * 119.19402 * 359.47118 * 7 6 5 9 9 C 1.32455 * 120.74423 * 0.55997 * 8 7 6 10 10 N 1.38643 * 119.21401 * 179.70797 * 9 8 7 11 11 C 1.38476 * 119.99822 * 356.83763 * 10 9 8 12 12 C 1.38937 * 119.99927 * 299.67944 * 11 10 9 13 13 H 1.07994 * 120.00454 * 149.52017 * 12 11 10 14 14 C 1.40874 * 119.99810 * 329.52107 * 12 11 10 15 15 N 1.30321 * 120.00018 * 3.34793 * 14 12 11 16 16 Si 1.86801 * 119.99622 * 183.34499 * 14 12 11 17 17 H 1.48505 * 109.47044 * 60.00542 * 16 14 12 18 18 H 1.48504 * 109.46908 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47342 * 300.00029 * 16 14 12 20 20 C 1.41114 * 120.00175 * 119.68004 * 11 10 9 21 21 C 1.43200 * 120.00121 * 185.13251 * 20 11 10 22 22 N 9.60339 * 109.43592 * 93.21521 * 2 1 3 23 23 C 1.43199 * 120.00014 * 5.12920 * 20 11 10 24 24 N 7.37624 * 124.14218 * 68.43252 * 2 1 3 25 25 N 1.32250 * 120.40351 * 270.02026 * 5 2 1 26 26 H 1.09004 * 109.46570 * 308.37414 * 1 2 3 27 27 H 1.09002 * 109.46986 * 68.37023 * 1 2 3 28 28 H 1.08994 * 109.47711 * 188.37621 * 1 2 3 29 29 H 1.08001 * 120.71907 * 0.02562 * 6 5 2 30 30 H 1.07994 * 120.39928 * 179.75108 * 7 6 5 31 31 H 0.96996 * 120.00076 * 176.84035 * 10 9 8 32 32 H 0.97000 * 119.99913 * 185.00954 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5861 6 6 2.4287 -1.9910 1.7771 7 6 2.7687 -2.4442 3.0419 8 7 2.9255 -1.5682 4.0206 9 6 2.7505 -0.2732 3.8047 10 7 2.9171 0.6165 4.8549 11 6 3.1980 0.1430 6.1255 12 6 2.3026 -0.7060 6.7642 13 1 2.6642 -1.4449 7.4638 14 6 0.9229 -0.6029 6.4990 15 7 0.4923 0.2437 5.6068 16 14 -0.2893 -1.6800 7.4263 17 1 -0.1823 -1.4058 8.8819 18 1 -1.6693 -1.3816 6.9660 19 1 0.0199 -3.1092 7.1677 20 6 4.3937 0.5227 6.7717 21 6 4.7371 -0.0520 8.0376 22 7 5.0095 -0.5079 9.0419 23 6 5.2637 1.4826 6.1616 24 7 5.9539 2.2442 5.6775 25 7 2.4203 0.1925 2.6091 26 1 -0.3632 0.6380 0.8057 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3634 -1.0166 0.1497 29 1 2.2988 -2.6839 0.9590 30 1 2.9083 -3.4993 3.2251 31 1 2.8369 1.5706 4.6997 32 1 -0.4608 0.3671 5.4755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:02 Heat of formation + Delta-G solvation = 57.769331 kcal Electronic energy + Delta-G solvation = -23578.658395 eV Core-core repulsion = 19860.938258 eV Total energy + Delta-G solvation = -3717.720137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.053 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.71693 -37.53016 -37.17304 -36.02438 -35.34226 -34.77897 -33.82661 -33.50711 -31.67258 -29.74854 -29.37448 -27.19944 -24.96450 -23.68443 -21.66148 -19.78254 -18.81208 -18.16368 -17.83084 -17.13954 -16.43603 -16.29567 -15.94783 -15.63000 -15.19079 -15.07519 -14.61612 -13.83427 -13.78449 -13.46098 -13.37501 -12.89952 -12.65383 -12.35213 -12.17945 -12.07941 -11.97054 -11.77148 -11.68604 -11.64042 -11.59791 -11.19930 -11.14648 -10.99902 -10.95187 -10.82218 -10.74135 -10.32308 -10.09163 -8.87307 -8.50692 -7.87690 -7.28971 -5.46645 -0.13508 0.83183 1.35325 2.09013 2.61645 2.63778 2.66935 2.78803 3.29454 3.35009 3.63865 3.80489 3.98756 4.01005 4.12091 4.18821 4.27160 4.46871 4.56772 4.80427 5.07245 5.11401 5.23455 5.26841 5.43958 5.52948 5.55274 6.16714 6.20904 6.35538 6.87370 7.02117 7.26372 7.49895 7.67632 7.87125 8.10690 8.67617 8.89468 9.06829 9.17148 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.005091 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.027208 B = 5498.825538 C = 6697.571432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.508 3.492 3 O -0.913 6.913 4 O -0.931 6.931 5 C -0.334 4.334 6 C -0.229 4.229 7 C 0.185 3.815 8 N -0.503 5.503 9 C 0.594 3.406 10 N -0.607 5.607 11 C 0.393 3.607 12 C -0.359 4.359 13 H 0.112 0.888 14 C 0.071 3.929 15 N -0.742 5.742 16 Si 0.931 3.069 17 H -0.251 1.251 18 H -0.271 1.271 19 H -0.252 1.252 20 C -0.299 4.299 21 C 0.328 3.672 22 N -0.528 5.528 23 C 0.304 3.696 24 N -0.525 5.525 25 N -0.482 5.482 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.415 0.585 32 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.424 -5.929 -11.116 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.683 3.317 3 O -0.910 6.910 4 O -0.928 6.928 5 C -0.566 4.566 6 C -0.258 4.258 7 C 0.012 3.988 8 N -0.224 5.224 9 C 0.237 3.763 10 N -0.234 5.234 11 C 0.289 3.711 12 C -0.388 4.388 13 H 0.130 0.870 14 C -0.158 4.158 15 N -0.362 5.362 16 Si 0.752 3.248 17 H -0.175 1.175 18 H -0.195 1.195 19 H -0.176 1.176 20 C -0.318 4.318 21 C 0.019 3.981 22 N -0.210 5.210 23 C -0.003 4.003 24 N -0.207 5.207 25 N -0.205 5.205 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.189 0.811 31 H 0.254 0.746 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.389 -4.473 -10.168 14.545 hybrid contribution -1.679 -1.006 0.124 1.962 sum -11.068 -5.479 -10.043 15.918 Atomic orbital electron populations 1.30141 1.24897 1.12251 1.12158 1.05465 0.78247 0.74800 0.73236 1.93616 1.76835 1.35591 1.84961 1.93608 1.77765 1.62305 1.59104 1.33298 1.06076 0.99176 1.18029 1.22240 1.07088 0.95670 1.00803 1.23104 0.88635 0.99665 0.87394 1.68127 1.17418 1.01894 1.34914 1.18980 0.86488 0.85562 0.85303 1.40959 1.70728 1.07519 1.04161 1.16667 0.87156 0.86917 0.80398 1.20126 0.90097 1.13000 1.15537 0.86982 1.26558 1.00391 0.94940 0.93861 1.69499 1.19167 1.24822 1.22675 0.85904 0.77317 0.80606 0.80943 1.17473 1.19548 1.17583 1.12923 1.02431 1.19190 0.97213 1.24563 0.91540 0.91094 0.90873 1.81064 1.11233 1.15207 1.13467 1.25213 0.91699 0.91362 0.92064 1.81094 1.11828 1.16526 1.11286 1.67903 1.16278 1.37501 0.98792 0.84423 0.84765 0.84948 0.82705 0.81113 0.74563 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.29 10.80 101.05 1.09 -3.20 16 2 S 2.51 28.78 5.88 -107.50 -0.63 28.15 16 3 O -0.91 -14.27 17.76 -57.54 -1.02 -15.29 16 4 O -0.93 -12.02 17.20 -57.54 -0.99 -13.01 16 5 C -0.33 -4.89 6.56 -17.22 -0.11 -5.00 16 6 C -0.23 -2.94 9.59 -39.30 -0.38 -3.32 16 7 C 0.18 2.60 11.30 -17.23 -0.19 2.41 16 8 N -0.50 -9.22 8.95 -13.88 -0.12 -9.35 16 9 C 0.59 11.54 7.26 -322.52 -2.34 9.19 16 10 N -0.61 -12.22 3.28 -11.37 -0.04 -12.26 16 11 C 0.39 8.22 5.39 -83.51 -0.45 7.77 16 12 C -0.36 -7.29 7.51 -38.33 -0.29 -7.58 16 13 H 0.11 2.30 7.22 -52.49 -0.38 1.92 16 14 C 0.07 1.32 5.35 -17.20 -0.09 1.23 16 15 N -0.74 -13.80 11.19 55.60 0.62 -13.18 16 16 Si 0.93 14.51 29.57 -169.99 -5.03 9.48 16 17 H -0.25 -4.04 7.11 56.52 0.40 -3.64 16 18 H -0.27 -4.07 7.11 56.52 0.40 -3.67 16 19 H -0.25 -3.94 7.11 56.52 0.40 -3.54 16 20 C -0.30 -6.59 5.88 -104.96 -0.62 -7.20 16 21 C 0.33 7.46 14.01 -22.47 -0.31 7.14 16 22 N -0.53 -12.41 18.54 41.84 0.78 -11.64 16 23 C 0.30 6.98 14.81 -22.47 -0.33 6.65 16 24 N -0.53 -12.59 18.54 41.84 0.78 -11.81 16 25 N -0.48 -8.71 10.20 -13.08 -0.13 -8.84 16 26 H 0.14 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.16 1.43 7.66 -52.49 -0.40 1.03 16 30 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.42 8.19 8.92 -40.82 -0.36 7.83 16 32 H 0.30 5.07 8.29 -40.82 -0.34 4.73 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -31.04 325.45 -6.89 -37.92 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -1.97 Total: 6.81 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -4.03 Total: 8.10 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: 1.88 Total: -67.07 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -2.01 Total: -28.30 kcal Atomic # 14 Polarization: 14.51 SS G_CDS: -5.03 Total: 9.48 kcal Atomic # 16 Polarization: 28.78 SS G_CDS: -0.63 Total: 28.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.04 -6.89 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.693 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds