Wall clock time and date at job start Tue Mar 31 2020 12:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42097 * 110.54646 * 2 1 4 4 O 1.42107 * 110.54092 * 223.24744 * 2 1 3 5 5 C 1.76200 * 104.45113 * 111.62912 * 2 1 3 6 6 C 1.38644 * 120.40728 * 89.99350 * 5 2 1 7 7 C 1.38595 * 118.55014 * 180.27644 * 6 5 2 8 8 N 1.32277 * 119.19402 * 359.47118 * 7 6 5 9 9 C 1.32455 * 120.74423 * 0.55997 * 8 7 6 10 10 N 1.38643 * 119.21401 * 179.70797 * 9 8 7 11 11 C 1.38476 * 119.99822 * 356.83763 * 10 9 8 12 12 C 1.38937 * 119.99927 * 299.67944 * 11 10 9 13 13 H 1.07994 * 120.00454 * 149.52017 * 12 11 10 14 14 C 1.40874 * 119.99810 * 329.52107 * 12 11 10 15 15 N 1.30321 * 120.00018 * 3.34793 * 14 12 11 16 16 Si 1.86801 * 119.99622 * 183.34499 * 14 12 11 17 17 H 1.48505 * 109.47044 * 60.00542 * 16 14 12 18 18 H 1.48504 * 109.46908 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47342 * 300.00029 * 16 14 12 20 20 C 1.41114 * 120.00175 * 119.68004 * 11 10 9 21 21 C 1.43200 * 120.00121 * 185.13251 * 20 11 10 22 22 N 9.60339 * 109.43592 * 93.21521 * 2 1 3 23 23 C 1.43199 * 120.00014 * 5.12920 * 20 11 10 24 24 N 7.37624 * 124.14218 * 68.43252 * 2 1 3 25 25 N 1.32250 * 120.40351 * 270.02026 * 5 2 1 26 26 H 1.09004 * 109.46570 * 308.37414 * 1 2 3 27 27 H 1.09002 * 109.46986 * 68.37023 * 1 2 3 28 28 H 1.08994 * 109.47711 * 188.37621 * 1 2 3 29 29 H 1.08001 * 120.71907 * 0.02562 * 6 5 2 30 30 H 1.07994 * 120.39928 * 179.75108 * 7 6 5 31 31 H 0.96996 * 120.00076 * 176.84035 * 10 9 8 32 32 H 0.97000 * 119.99913 * 185.00954 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5861 6 6 2.4287 -1.9910 1.7771 7 6 2.7687 -2.4442 3.0419 8 7 2.9255 -1.5682 4.0206 9 6 2.7505 -0.2732 3.8047 10 7 2.9171 0.6165 4.8549 11 6 3.1980 0.1430 6.1255 12 6 2.3026 -0.7060 6.7642 13 1 2.6642 -1.4449 7.4638 14 6 0.9229 -0.6029 6.4990 15 7 0.4923 0.2437 5.6068 16 14 -0.2893 -1.6800 7.4263 17 1 -0.1823 -1.4058 8.8819 18 1 -1.6693 -1.3816 6.9660 19 1 0.0199 -3.1092 7.1677 20 6 4.3937 0.5227 6.7717 21 6 4.7371 -0.0520 8.0376 22 7 5.0095 -0.5079 9.0419 23 6 5.2637 1.4826 6.1616 24 7 5.9539 2.2442 5.6775 25 7 2.4203 0.1925 2.6091 26 1 -0.3632 0.6380 0.8057 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3634 -1.0166 0.1497 29 1 2.2988 -2.6839 0.9590 30 1 2.9083 -3.4993 3.2251 31 1 2.8369 1.5706 4.6997 32 1 -0.4608 0.3671 5.4755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:02 Heat of formation + Delta-G solvation = 36.254294 kcal Electronic energy + Delta-G solvation = -23579.591357 eV Core-core repulsion = 19860.938258 eV Total energy + Delta-G solvation = -3718.653099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.053 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95323 -39.03975 -38.16406 -37.07474 -37.01142 -36.58592 -35.27561 -34.72593 -33.08287 -30.82367 -30.30439 -28.82031 -26.11341 -24.97018 -23.13523 -21.17220 -20.03420 -19.43828 -19.15783 -18.54656 -17.82215 -17.26657 -17.15103 -16.73347 -16.40651 -16.23472 -15.89024 -15.19369 -14.88896 -14.64143 -14.41948 -13.99424 -13.94247 -13.91775 -13.51637 -13.47810 -13.40710 -13.17918 -13.08184 -13.07277 -12.86440 -12.77745 -12.71874 -12.23559 -12.08378 -11.99358 -11.85475 -11.70391 -11.48188 -10.11707 -9.96624 -9.32510 -8.74876 -7.12333 -0.97343 -0.31392 0.12799 0.64210 1.35580 1.47224 1.50898 1.69454 1.92872 2.02103 2.06861 2.17965 2.46508 2.61841 2.70037 3.02942 3.06946 3.34425 3.48054 3.73431 3.87181 4.10131 4.12171 4.29834 4.31463 4.44615 4.55672 4.69682 4.96396 5.19502 5.38988 5.53204 5.89500 5.97101 6.18054 6.41035 6.62639 7.11063 7.26859 7.36995 7.73982 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.005091 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.027208 B = 5498.825538 C = 6697.571432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.611 4.611 2 S 2.511 3.489 3 O -0.965 6.965 4 O -0.949 6.949 5 C -0.353 4.353 6 C -0.212 4.212 7 C 0.177 3.823 8 N -0.535 5.535 9 C 0.573 3.427 10 N -0.617 5.617 11 C 0.387 3.613 12 C -0.353 4.353 13 H 0.106 0.894 14 C 0.045 3.955 15 N -0.741 5.741 16 Si 0.987 3.013 17 H -0.260 1.260 18 H -0.256 1.256 19 H -0.250 1.250 20 C -0.320 4.320 21 C 0.333 3.667 22 N -0.550 5.550 23 C 0.312 3.688 24 N -0.556 5.556 25 N -0.508 5.508 26 H 0.142 0.858 27 H 0.168 0.832 28 H 0.164 0.836 29 H 0.196 0.804 30 H 0.212 0.788 31 H 0.410 0.590 32 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.564 -7.982 -12.602 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.767 4.767 2 S 2.688 3.312 3 O -0.962 6.962 4 O -0.946 6.946 5 C -0.581 4.581 6 C -0.239 4.239 7 C 0.006 3.994 8 N -0.256 5.256 9 C 0.216 3.784 10 N -0.244 5.244 11 C 0.282 3.718 12 C -0.380 4.380 13 H 0.124 0.876 14 C -0.183 4.183 15 N -0.361 5.361 16 Si 0.806 3.194 17 H -0.184 1.184 18 H -0.179 1.179 19 H -0.174 1.174 20 C -0.339 4.339 21 C 0.026 3.974 22 N -0.233 5.233 23 C 0.007 3.993 24 N -0.239 5.239 25 N -0.231 5.231 26 H 0.161 0.839 27 H 0.185 0.815 28 H 0.182 0.818 29 H 0.213 0.787 30 H 0.228 0.772 31 H 0.248 0.752 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.477 -6.549 -11.693 18.311 hybrid contribution -0.927 -0.485 0.379 1.113 sum -13.404 -7.033 -11.314 18.898 Atomic orbital electron populations 1.29933 1.17608 1.14776 1.14340 1.05424 0.80870 0.73193 0.71680 1.93557 1.79796 1.37719 1.85105 1.93575 1.80038 1.62190 1.58760 1.34017 1.05683 1.00082 1.18268 1.22757 1.04134 0.95588 1.01421 1.23902 0.87382 1.00894 0.87237 1.68119 1.18571 1.01963 1.36909 1.19091 0.87756 0.85989 0.85577 1.40854 1.71949 1.07429 1.04160 1.16656 0.86774 0.87404 0.80968 1.20309 0.91100 1.12129 1.14502 0.87580 1.27182 1.00720 0.95817 0.94624 1.69510 1.20278 1.24095 1.22174 0.85096 0.76083 0.79075 0.79194 1.18391 1.17904 1.17358 1.13003 1.03345 1.20117 0.97456 1.24679 0.91094 0.90739 0.90864 1.81041 1.11917 1.16253 1.14097 1.25379 0.91294 0.91125 0.91549 1.81069 1.12811 1.17781 1.12263 1.67893 1.17350 1.38748 0.99090 0.83907 0.81455 0.81820 0.78679 0.77181 0.75212 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -5.37 10.80 113.37 1.22 -4.15 16 2 S 2.51 53.09 5.88 -56.49 -0.33 52.76 16 3 O -0.96 -30.25 17.76 -127.65 -2.27 -32.51 16 4 O -0.95 -22.43 17.20 -127.65 -2.20 -24.62 16 5 C -0.35 -9.81 6.56 84.73 0.56 -9.25 16 6 C -0.21 -4.83 9.59 22.45 0.22 -4.61 16 7 C 0.18 4.58 11.30 84.71 0.96 5.53 16 8 N -0.53 -19.22 8.95 -197.84 -1.77 -20.99 16 9 C 0.57 22.34 7.26 261.38 1.90 24.24 16 10 N -0.62 -25.46 3.28 -189.90 -0.62 -26.09 16 11 C 0.39 16.54 5.39 38.97 0.21 16.75 16 12 C -0.35 -14.27 7.51 23.08 0.17 -14.10 16 13 H 0.11 4.37 7.22 -2.91 -0.02 4.35 16 14 C 0.05 1.62 5.35 85.56 0.46 2.08 16 15 N -0.74 -26.63 11.19 21.99 0.25 -26.38 16 16 Si 0.99 27.78 29.57 68.60 2.03 29.81 16 17 H -0.26 -7.69 7.11 99.48 0.71 -6.98 16 18 H -0.26 -6.54 7.11 99.48 0.71 -5.84 16 19 H -0.25 -6.95 7.11 99.48 0.71 -6.24 16 20 C -0.32 -14.57 5.88 -20.08 -0.12 -14.68 16 21 C 0.33 15.55 14.01 88.33 1.24 16.79 16 22 N -0.55 -26.33 18.54 19.00 0.35 -25.97 16 23 C 0.31 14.91 14.81 88.33 1.31 16.22 16 24 N -0.56 -27.66 18.54 19.00 0.35 -27.31 16 25 N -0.51 -18.32 10.20 -195.29 -1.99 -20.31 16 26 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.17 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.20 2.73 7.66 -2.91 -0.02 2.71 16 30 H 0.21 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.41 16.96 8.92 -92.71 -0.83 16.14 16 32 H 0.31 9.86 8.29 -92.71 -0.77 9.09 16 Total: -1.00 -70.10 325.45 2.32 -67.78 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.40 Total: 19.03 kcal Atomic # 6 Polarization: 26.70 SS G_CDS: 8.12 Total: 34.82 kcal Atomic # 7 Polarization: -143.62 SS G_CDS: -3.43 Total: -147.06 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -4.46 Total: -57.14 kcal Atomic # 14 Polarization: 27.78 SS G_CDS: 2.03 Total: 29.81 kcal Atomic # 16 Polarization: 53.09 SS G_CDS: -0.33 Total: 52.76 kcal Total: -70.10 2.32 -67.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.030 kcal (2) G-P(sol) polarization free energy of solvation -70.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds