Wall clock time and date at job start Tue Mar 31 2020 12:17:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30821 * 1
3 3 Si 1.86794 * 120.00337 * 2 1
4 4 H 1.48503 * 109.47337 * 272.53464 * 3 2 1
5 5 H 1.48506 * 109.47025 * 32.53336 * 3 2 1
6 6 H 1.48498 * 109.47315 * 152.53306 * 3 2 1
7 7 C 1.39939 * 119.99687 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00327 * 347.50572 * 7 2 1
9 9 C 1.41446 * 119.99982 * 167.50169 * 7 2 1
10 10 C 1.40788 * 120.17263 * 328.66842 * 9 7 2
11 11 C 1.37722 * 120.04111 * 180.02562 * 10 9 7
12 12 C 1.38364 * 120.41343 * 359.67411 * 11 10 9
13 13 C 1.39907 * 120.35662 * 0.60264 * 12 11 10
14 14 C 1.47832 * 120.02854 * 179.69406 * 13 12 11
15 15 O 1.21543 * 120.00329 * 179.72829 * 14 13 12
16 16 N 1.34779 * 119.99960 * 359.72756 * 14 13 12
17 17 C 1.39009 * 119.99749 * 184.90886 * 16 14 13
18 18 C 1.39174 * 120.47627 * 174.81288 * 17 16 14
19 19 C 1.38980 * 118.31492 * 180.02562 * 18 17 16
20 20 O 1.35535 * 120.46481 * 180.02562 * 19 18 17
21 21 N 1.32983 * 119.07207 * 359.97438 * 19 18 17
22 22 C 1.31882 * 120.88287 * 0.02562 * 21 19 18
23 23 Cl 1.73605 * 119.07170 * 179.97438 * 22 21 19
24 24 N 1.31870 * 121.85783 * 0.02562 * 22 21 19
25 25 C 1.39050 * 119.94063 * 359.42495 * 13 12 11
26 26 H 0.97000 * 119.99976 * 359.97438 * 1 2 3
27 27 H 1.07997 * 119.97992 * 0.02562 * 10 9 7
28 28 H 1.08003 * 119.78985 * 179.97438 * 11 10 9
29 29 H 1.08000 * 119.82544 * 180.29584 * 12 11 10
30 30 H 0.97001 * 120.00337 * 4.91439 * 16 14 13
31 31 H 1.07998 * 120.84944 * 359.97438 * 18 17 16
32 32 H 0.96701 * 113.99910 * 269.97802 * 20 19 18
33 33 H 1.08009 * 120.20251 * 180.25420 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6176 0.0000
4 1 2.4362 2.0773 -1.3987
5 1 1.4676 2.6366 0.7530
6 1 3.5656 1.4252 0.6457
7 6 2.0078 -1.2119 0.0005
8 1 1.4870 -2.1361 0.2033
9 6 3.3972 -1.2267 -0.2645
10 6 3.9630 -0.2693 -1.1280
11 6 5.3159 -0.2865 -1.3846
12 6 6.1291 -1.2369 -0.7931
13 6 5.5839 -2.1997 0.0632
14 6 6.4584 -3.2160 0.6859
15 8 5.9851 -4.0492 1.4336
16 7 7.7806 -3.2187 0.4246
17 6 8.5864 -4.2336 0.9276
18 6 9.9312 -4.3067 0.5765
19 6 10.6952 -5.3404 1.1050
20 8 12.0093 -5.4527 0.7927
21 7 10.1192 -6.2171 1.9223
22 6 8.8413 -6.1153 2.2323
23 17 8.1372 -7.2862 3.3033
24 7 8.0831 -5.1499 1.7507
25 6 4.2197 -2.1965 0.3322
26 1 -0.4850 0.8400 0.0004
27 1 3.3356 0.4789 -1.5894
28 1 5.7456 0.4496 -2.0480
29 1 7.1896 -1.2387 -0.9973
30 1 8.1700 -2.5123 -0.1142
31 1 10.3698 -3.5792 -0.0904
32 1 12.1826 -5.9934 0.0099
33 1 3.7950 -2.9353 0.9958
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001188666724.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:27
Heat of formation + Delta-G solvation = 7.981799 kcal
Electronic energy + Delta-G solvation = -22666.016099 eV
Core-core repulsion = 18911.800555 eV
Total energy + Delta-G solvation = -3754.215544 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 319.051 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.61704 -39.77633 -38.09031 -37.54239 -36.91537 -35.31846 -33.82369 -32.72331
-31.39775 -30.51583 -30.11378 -25.61404 -24.82546 -24.64226 -22.87959 -20.88497
-20.67361 -19.72593 -18.42863 -17.97710 -17.07359 -16.44626 -16.00997 -15.91725
-15.82206 -15.57402 -14.89857 -14.81071 -14.30817 -14.10926 -13.79357 -12.95948
-12.87779 -12.59952 -12.38520 -12.12223 -11.78466 -11.54529 -11.36544 -11.23780
-11.05465 -10.87713 -10.68566 -10.21132 -10.06049 -10.00877 -9.83227 -9.40908
-9.14366 -9.04240 -8.04724 -7.91328 -7.07804 -4.67984 0.40104 0.64530
1.16674 1.72057 2.37136 2.61539 2.95913 2.98147 3.10371 3.15015
3.22737 3.55330 3.83546 4.20490 4.28335 4.35837 4.69708 4.75466
5.13249 5.18840 5.36219 5.66018 5.82459 6.15112 6.21499 6.39798
6.48757 6.51305 6.81869 6.90016 7.01511 7.17402 7.26654 7.31703
7.60991 7.68091 7.79742 8.16928 8.28510 8.38099 8.59267 9.94195
Molecular weight = 319.05amu
Principal moments of inertia in cm(-1)
A = 0.023222 B = 0.002957 C = 0.002671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1205.452860 B = 9467.142915 C =10480.279195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.804 5.804
2 C 0.080 3.920
3 Si 0.914 3.086
4 H -0.269 1.269
5 H -0.290 1.290
6 H -0.243 1.243
7 C -0.437 4.437
8 H 0.095 0.905
9 C 0.082 3.918
10 C -0.219 4.219
11 C -0.080 4.080
12 C -0.219 4.219
13 C -0.110 4.110
14 C 0.552 3.448
15 O -0.463 6.463
16 N -0.650 5.650
17 C 0.446 3.554
18 C -0.284 4.284
19 C 0.397 3.603
20 O -0.469 6.469
21 N -0.557 5.557
22 C 0.418 3.582
23 Cl 0.035 6.965
24 N -0.504 5.504
25 C -0.129 4.129
26 H 0.288 0.712
27 H 0.106 0.894
28 H 0.102 0.898
29 H 0.096 0.904
30 H 0.425 0.575
31 H 0.161 0.839
32 H 0.411 0.589
33 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.535 -5.340 -1.681 19.362
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.428 5.428
2 C -0.139 4.139
3 Si 0.741 3.259
4 H -0.195 1.195
5 H -0.217 1.217
6 H -0.166 1.166
7 C -0.466 4.466
8 H 0.113 0.887
9 C 0.079 3.921
10 C -0.239 4.239
11 C -0.098 4.098
12 C -0.239 4.239
13 C -0.113 4.113
14 C 0.342 3.658
15 O -0.332 6.332
16 N -0.297 5.297
17 C 0.206 3.794
18 C -0.312 4.312
19 C 0.212 3.788
20 O -0.277 6.277
21 N -0.289 5.289
22 C 0.122 3.878
23 Cl 0.063 6.937
24 N -0.229 5.229
25 C -0.149 4.149
26 H 0.099 0.901
27 H 0.123 0.877
28 H 0.120 0.880
29 H 0.114 0.886
30 H 0.265 0.735
31 H 0.179 0.821
32 H 0.270 0.730
33 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 17.439 -6.156 -0.030 18.494
hybrid contribution 0.796 1.364 -1.201 1.984
sum 18.235 -4.792 -1.231 18.894
Atomic orbital electron populations
1.69640 1.08027 1.30521 1.34564 1.26189 0.94898 1.01755 0.91071
0.86279 0.81052 0.79545 0.79020 1.19523 1.21713 1.16587 1.19573
0.91051 0.95930 1.40003 0.88656 1.17707 0.93529 0.90998 0.89906
1.21234 0.95027 1.03939 1.03674 1.20499 0.93722 0.97238 0.98356
1.20350 0.97449 1.00331 1.05778 1.19252 0.93919 0.96618 1.01521
1.19197 0.80354 0.85321 0.80885 1.90864 1.73172 1.36906 1.32212
1.43910 1.08842 1.25071 1.51923 1.18360 0.87221 0.86817 0.87039
1.22260 0.93471 1.05919 1.09581 1.18714 0.83961 0.87978 0.88186
1.84737 1.17615 1.73400 1.51946 1.67332 1.11722 1.31073 1.18770
1.22418 0.84520 0.89505 0.91334 1.98451 1.82337 1.53105 1.59773
1.67941 1.38507 1.03923 1.12577 1.21305 0.90685 1.01755 1.01116
0.90147 0.87676 0.88005 0.88600 0.73541 0.82107 0.72951 0.86318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -20.62 13.93 55.55 0.77 -19.85 16
2 C 0.08 2.01 5.46 -17.35 -0.09 1.91 16
3 Si 0.91 19.56 24.41 -169.99 -4.15 15.41 16
4 H -0.27 -5.49 6.66 56.52 0.38 -5.11 16
5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16
6 H -0.24 -5.27 6.69 56.52 0.38 -4.89 16
7 C -0.44 -11.29 9.60 -37.72 -0.36 -11.65 16
8 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16
9 C 0.08 1.94 5.12 -106.87 -0.55 1.40 16
10 C -0.22 -4.78 7.00 -38.81 -0.27 -5.05 16
11 C -0.08 -1.49 10.01 -39.72 -0.40 -1.88 16
12 C -0.22 -3.77 9.55 -38.91 -0.37 -4.14 16
13 C -0.11 -2.14 5.87 -105.05 -0.62 -2.76 16
14 C 0.55 10.07 7.73 -12.33 -0.10 9.98 16
15 O -0.46 -9.95 14.64 5.33 0.08 -9.87 16
16 N -0.65 -8.87 5.33 -12.19 -0.06 -8.93 16
17 C 0.45 6.14 7.45 -154.44 -1.15 4.99 16
18 C -0.28 -2.86 9.99 -38.96 -0.39 -3.25 16
19 C 0.40 4.27 7.82 -16.78 -0.13 4.14 16
20 O -0.47 -3.66 13.57 -18.30 -0.25 -3.90 16
21 N -0.56 -7.42 10.43 -11.76 -0.12 -7.55 16
22 C 0.42 6.19 8.18 -92.01 -0.75 5.43 16
23 Cl 0.04 0.47 29.27 -51.86 -1.52 -1.04 16
24 N -0.50 -8.30 8.01 -10.86 -0.09 -8.39 16
25 C -0.13 -2.90 9.34 -38.44 -0.36 -3.25 16
26 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16
27 H 0.11 2.28 4.43 -52.49 -0.23 2.05 16
28 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16
29 H 0.10 1.23 6.39 -52.49 -0.34 0.89 16
30 H 0.42 4.22 6.75 -40.82 -0.28 3.95 16
31 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16
32 H 0.41 0.95 9.06 45.56 0.41 1.36 16
33 H 0.12 2.74 7.64 -52.48 -0.40 2.34 16
LS Contribution 309.88 15.07 4.67 4.67
Total: -1.00 -30.93 309.88 -7.49 -38.42
By element:
Atomic # 1 Polarization: 6.48 SS G_CDS: -1.28 Total: 5.20 kcal
Atomic # 6 Polarization: 1.38 SS G_CDS: -5.54 Total: -4.16 kcal
Atomic # 7 Polarization: -45.22 SS G_CDS: 0.50 Total: -44.72 kcal
Atomic # 8 Polarization: -13.61 SS G_CDS: -0.17 Total: -13.78 kcal
Atomic # 14 Polarization: 19.56 SS G_CDS: -4.15 Total: 15.41 kcal
Atomic # 17 Polarization: 0.47 SS G_CDS: -1.52 Total: -1.04 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -30.93 -7.49 -38.42 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188666724.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.398 kcal
(2) G-P(sol) polarization free energy of solvation -30.928 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.982 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds