Wall clock time and date at job start Tue Mar 31 2020 12:17:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30821 * 1
3 3 Si 1.86794 * 120.00337 * 2 1
4 4 H 1.48503 * 109.47337 * 272.53464 * 3 2 1
5 5 H 1.48506 * 109.47025 * 32.53336 * 3 2 1
6 6 H 1.48498 * 109.47315 * 152.53306 * 3 2 1
7 7 C 1.39939 * 119.99687 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00327 * 347.50572 * 7 2 1
9 9 C 1.41446 * 119.99982 * 167.50169 * 7 2 1
10 10 C 1.40788 * 120.17263 * 328.66842 * 9 7 2
11 11 C 1.37722 * 120.04111 * 180.02562 * 10 9 7
12 12 C 1.38364 * 120.41343 * 359.67411 * 11 10 9
13 13 C 1.39907 * 120.35662 * 0.60264 * 12 11 10
14 14 C 1.47832 * 120.02854 * 179.69406 * 13 12 11
15 15 O 1.21543 * 120.00329 * 179.72829 * 14 13 12
16 16 N 1.34779 * 119.99960 * 359.72756 * 14 13 12
17 17 C 1.39009 * 119.99749 * 184.90886 * 16 14 13
18 18 C 1.39174 * 120.47627 * 174.81288 * 17 16 14
19 19 C 1.38980 * 118.31492 * 180.02562 * 18 17 16
20 20 O 1.35535 * 120.46481 * 180.02562 * 19 18 17
21 21 N 1.32983 * 119.07207 * 359.97438 * 19 18 17
22 22 C 1.31882 * 120.88287 * 0.02562 * 21 19 18
23 23 Cl 1.73605 * 119.07170 * 179.97438 * 22 21 19
24 24 N 1.31870 * 121.85783 * 0.02562 * 22 21 19
25 25 C 1.39050 * 119.94063 * 359.42495 * 13 12 11
26 26 H 0.97000 * 119.99976 * 359.97438 * 1 2 3
27 27 H 1.07997 * 119.97992 * 0.02562 * 10 9 7
28 28 H 1.08003 * 119.78985 * 179.97438 * 11 10 9
29 29 H 1.08000 * 119.82544 * 180.29584 * 12 11 10
30 30 H 0.97001 * 120.00337 * 4.91439 * 16 14 13
31 31 H 1.07998 * 120.84944 * 359.97438 * 18 17 16
32 32 H 0.96701 * 113.99910 * 269.97802 * 20 19 18
33 33 H 1.08009 * 120.20251 * 180.25420 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6176 0.0000
4 1 2.4362 2.0773 -1.3987
5 1 1.4676 2.6366 0.7530
6 1 3.5656 1.4252 0.6457
7 6 2.0078 -1.2119 0.0005
8 1 1.4870 -2.1361 0.2033
9 6 3.3972 -1.2267 -0.2645
10 6 3.9630 -0.2693 -1.1280
11 6 5.3159 -0.2865 -1.3846
12 6 6.1291 -1.2369 -0.7931
13 6 5.5839 -2.1997 0.0632
14 6 6.4584 -3.2160 0.6859
15 8 5.9851 -4.0492 1.4336
16 7 7.7806 -3.2187 0.4246
17 6 8.5864 -4.2336 0.9276
18 6 9.9312 -4.3067 0.5765
19 6 10.6952 -5.3404 1.1050
20 8 12.0093 -5.4527 0.7927
21 7 10.1192 -6.2171 1.9223
22 6 8.8413 -6.1153 2.2323
23 17 8.1372 -7.2862 3.3033
24 7 8.0831 -5.1499 1.7507
25 6 4.2197 -2.1965 0.3322
26 1 -0.4850 0.8400 0.0004
27 1 3.3356 0.4789 -1.5894
28 1 5.7456 0.4496 -2.0480
29 1 7.1896 -1.2387 -0.9973
30 1 8.1700 -2.5123 -0.1142
31 1 10.3698 -3.5792 -0.0904
32 1 12.1826 -5.9934 0.0099
33 1 3.7950 -2.9353 0.9958
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001188666724.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:27
Heat of formation + Delta-G solvation = -16.784311 kcal
Electronic energy + Delta-G solvation = -22667.090038 eV
Core-core repulsion = 18911.800555 eV
Total energy + Delta-G solvation = -3755.289483 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 319.051 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-42.63242 -41.08859 -39.27414 -38.71808 -37.96023 -36.52445 -35.56991 -33.83177
-32.69726 -31.97029 -31.56709 -27.28593 -26.08822 -25.67248 -24.17108 -22.50973
-22.04118 -20.67901 -19.84361 -19.05697 -18.39068 -17.82180 -17.20020 -17.10115
-16.79417 -16.69192 -16.47589 -16.02484 -15.65337 -15.45967 -15.26368 -14.59636
-14.51332 -13.92757 -13.46696 -13.32402 -13.30594 -12.91417 -12.65869 -12.56318
-12.39828 -12.31788 -11.94618 -11.73219 -11.61247 -11.43380 -11.08939 -11.04795
-10.36365 -10.07039 -9.64990 -9.60264 -8.88963 -6.58178 -0.55654 -0.33502
0.17404 0.21500 0.73275 1.25513 1.42115 1.48714 1.50112 1.80508
2.10878 2.21330 2.43996 2.66357 3.21361 3.28406 3.42029 3.73049
3.93752 4.08145 4.24378 4.36042 4.53643 4.58204 4.83717 4.89767
5.11094 5.17065 5.36520 5.44191 5.59274 5.66866 5.83156 6.02410
6.19388 6.29895 6.49580 6.62332 6.67751 6.72774 7.00838 8.20314
Molecular weight = 319.05amu
Principal moments of inertia in cm(-1)
A = 0.023222 B = 0.002957 C = 0.002671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1205.452860 B = 9467.142915 C =10480.279195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.858 5.858
2 C 0.039 3.961
3 Si 0.972 3.028
4 H -0.244 1.244
5 H -0.283 1.283
6 H -0.245 1.245
7 C -0.488 4.488
8 H 0.047 0.953
9 C 0.065 3.935
10 C -0.221 4.221
11 C -0.081 4.081
12 C -0.174 4.174
13 C -0.113 4.113
14 C 0.557 3.443
15 O -0.507 6.507
16 N -0.629 5.629
17 C 0.421 3.579
18 C -0.248 4.248
19 C 0.398 3.602
20 O -0.465 6.465
21 N -0.565 5.565
22 C 0.403 3.597
23 Cl 0.030 6.970
24 N -0.546 5.546
25 C -0.160 4.160
26 H 0.294 0.706
27 H 0.108 0.892
28 H 0.153 0.847
29 H 0.160 0.840
30 H 0.444 0.556
31 H 0.210 0.790
32 H 0.436 0.564
33 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.264 -3.247 -3.975 24.801
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.484 5.484
2 C -0.174 4.174
3 Si 0.794 3.206
4 H -0.169 1.169
5 H -0.210 1.210
6 H -0.168 1.168
7 C -0.518 4.518
8 H 0.066 0.934
9 C 0.063 3.937
10 C -0.240 4.240
11 C -0.099 4.099
12 C -0.194 4.194
13 C -0.116 4.116
14 C 0.346 3.654
15 O -0.379 6.379
16 N -0.280 5.280
17 C 0.183 3.817
18 C -0.275 4.275
19 C 0.213 3.787
20 O -0.276 6.276
21 N -0.298 5.298
22 C 0.107 3.893
23 Cl 0.058 6.942
24 N -0.272 5.272
25 C -0.181 4.181
26 H 0.105 0.895
27 H 0.125 0.875
28 H 0.171 0.829
29 H 0.178 0.822
30 H 0.289 0.711
31 H 0.227 0.773
32 H 0.301 0.699
33 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 23.250 -4.076 -2.379 23.725
hybrid contribution -0.538 0.520 -0.555 0.932
sum 22.712 -3.557 -2.934 23.175
Atomic orbital electron populations
1.69696 1.09391 1.31569 1.37793 1.26965 0.95564 1.04556 0.90346
0.85426 0.79441 0.75520 0.80198 1.16923 1.21029 1.16837 1.19496
0.92739 0.95024 1.44511 0.93436 1.17756 0.92670 0.92439 0.90874
1.21476 0.97033 1.02840 1.02635 1.21081 0.92152 0.98224 0.98393
1.21098 1.00451 0.96704 1.01103 1.19476 0.92794 0.97591 1.01748
1.18952 0.81819 0.84330 0.80262 1.90864 1.74479 1.38407 1.34101
1.43408 1.07014 1.25724 1.51822 1.18597 0.88601 0.86751 0.87766
1.22580 0.91236 1.05557 1.08089 1.18937 0.84893 0.87483 0.87351
1.84724 1.15388 1.74013 1.53500 1.67371 1.11046 1.31984 1.19357
1.22357 0.85027 0.89761 0.92146 1.98438 1.82590 1.53226 1.59989
1.67761 1.40298 1.05163 1.14004 1.21206 0.92688 1.01956 1.02222
0.89539 0.87476 0.82910 0.82224 0.71132 0.77281 0.69945 0.89258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -47.29 13.93 21.82 0.30 -46.99 16
2 C 0.04 2.06 5.46 85.26 0.47 2.53 16
3 Si 0.97 40.41 24.41 68.60 1.67 42.09 16
4 H -0.24 -9.11 6.66 99.48 0.66 -8.45 16
5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16
6 H -0.24 -10.11 6.69 99.48 0.67 -9.44 16
7 C -0.49 -27.50 9.60 23.47 0.23 -27.28 16
8 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16
9 C 0.07 3.20 5.12 -21.32 -0.11 3.09 16
10 C -0.22 -9.15 7.00 22.77 0.16 -8.99 16
11 C -0.08 -2.54 10.01 22.18 0.22 -2.31 16
12 C -0.17 -4.95 9.55 22.70 0.22 -4.73 16
13 C -0.11 -4.18 5.87 -20.14 -0.12 -4.29 16
14 C 0.56 19.39 7.73 86.78 0.67 20.06 16
15 O -0.51 -22.29 14.64 -3.85 -0.06 -22.35 16
16 N -0.63 -14.57 5.33 -310.76 -1.66 -16.22 16
17 C 0.42 10.20 7.45 132.87 0.99 11.19 16
18 C -0.25 -3.67 9.99 22.67 0.23 -3.44 16
19 C 0.40 6.91 7.82 84.70 0.66 7.57 16
20 O -0.46 -4.92 13.57 -88.40 -1.20 -6.12 16
21 N -0.57 -13.83 10.43 -303.70 -3.17 -16.99 16
22 C 0.40 11.61 8.18 180.84 1.48 13.09 16
23 Cl 0.03 0.81 29.27 -2.72 -0.08 0.73 16
24 N -0.55 -17.47 8.01 -188.28 -1.51 -18.98 16
25 C -0.16 -7.53 9.34 23.01 0.21 -7.32 16
26 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16
27 H 0.11 4.39 4.43 -2.91 -0.01 4.38 16
28 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16
29 H 0.16 2.57 6.39 -2.91 -0.02 2.55 16
30 H 0.44 5.81 6.75 -92.71 -0.63 5.18 16
31 H 0.21 0.97 8.06 -2.91 -0.02 0.95 16
32 H 0.44 -0.26 9.06 -74.06 -0.67 -0.93 16
33 H 0.09 4.59 7.64 -2.91 -0.02 4.57 16
Total: -1.00 -76.89 309.88 -0.54 -77.42
By element:
Atomic # 1 Polarization: 8.39 SS G_CDS: -0.15 Total: 8.24 kcal
Atomic # 6 Polarization: -6.14 SS G_CDS: 5.30 Total: -0.83 kcal
Atomic # 7 Polarization: -93.16 SS G_CDS: -6.02 Total: -99.18 kcal
Atomic # 8 Polarization: -27.21 SS G_CDS: -1.26 Total: -28.47 kcal
Atomic # 14 Polarization: 40.41 SS G_CDS: 1.67 Total: 42.09 kcal
Atomic # 17 Polarization: 0.81 SS G_CDS: -0.08 Total: 0.73 kcal
Total: -76.89 -0.54 -77.42 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188666724.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.640 kcal
(2) G-P(sol) polarization free energy of solvation -76.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.249 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.784 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds