Wall clock time and date at job start Tue Mar 31 2020 12:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99703 * 2 1 4 4 H 1.48500 * 109.47152 * 179.72261 * 3 2 1 5 5 H 1.48503 * 109.46749 * 299.72366 * 3 2 1 6 6 H 1.48499 * 109.46964 * 59.72072 * 3 2 1 7 7 C 1.37874 * 120.00403 * 179.72363 * 2 1 3 8 8 H 1.08002 * 120.00202 * 180.27974 * 7 2 1 9 9 S 1.76196 * 119.99831 * 0.27319 * 7 2 1 10 10 O 1.42097 * 106.40241 * 293.53972 * 9 7 2 11 11 O 1.42102 * 106.40179 * 66.46333 * 9 7 2 12 12 N 1.65607 * 107.21741 * 180.02562 * 9 7 2 13 13 C 1.46499 * 119.99767 * 65.60746 * 12 9 7 14 14 H 1.09005 * 109.44352 * 23.71003 * 13 12 9 15 15 C 1.53072 * 109.44014 * 263.78962 * 13 12 9 16 16 C 1.53411 * 108.28363 * 191.70945 * 15 13 12 17 17 O 1.42821 * 108.37404 * 64.74521 * 16 15 13 18 18 C 1.35859 * 117.87498 * 310.88190 * 17 16 15 19 19 C 1.39125 * 118.46457 * 196.98973 * 18 17 16 20 20 C 1.38197 * 120.25195 * 180.20995 * 19 18 17 21 21 F 1.35096 * 120.03394 * 179.97438 * 20 19 18 22 22 C 1.38477 * 119.93179 * 0.02562 * 20 19 18 23 23 C 1.38290 * 119.92685 * 359.90485 * 22 20 19 24 24 F 1.35104 * 119.84901 * 180.02562 * 23 22 20 25 25 C 1.38350 * 121.80078 * 17.05100 * 18 17 16 26 26 H 0.97005 * 119.99445 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00440 * 245.60739 * 12 9 7 28 28 H 1.08996 * 109.70341 * 311.41500 * 15 13 12 29 29 H 1.09003 * 109.69792 * 71.97425 * 15 13 12 30 30 H 1.09004 * 109.68223 * 184.45901 * 16 15 13 31 31 H 1.08994 * 109.68483 * 305.02135 * 16 15 13 32 32 H 1.08004 * 119.87514 * 0.21919 * 19 18 17 33 33 H 1.08005 * 120.03522 * 179.88589 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0068 5 1 1.8953 2.3936 -1.2159 6 1 1.8852 2.3995 1.2091 7 6 2.0046 -1.1940 0.0058 8 1 3.0846 -1.1939 0.0103 9 16 1.1237 -2.7199 0.0058 10 8 0.4465 -2.7922 1.2529 11 8 0.4568 -2.7983 -1.2465 12 7 2.2486 -3.9353 0.0142 13 6 3.1254 -4.1138 1.1741 14 1 2.6526 -3.6820 2.0563 15 6 4.4607 -3.4111 0.9164 16 6 5.4542 -3.8537 1.9982 17 8 5.6935 -5.2533 1.8443 18 6 4.6163 -6.0725 1.7245 19 6 4.7941 -7.4365 1.9329 20 6 3.7246 -8.3039 1.8163 21 9 3.9024 -9.6277 2.0191 22 6 2.4707 -7.8149 1.4903 23 6 2.2911 -6.4593 1.2841 24 9 1.0670 -5.9839 0.9666 25 6 3.3621 -5.5853 1.4025 26 1 -0.4849 -0.8401 0.0004 27 1 2.3269 -4.5289 -0.7489 28 1 4.8392 -3.6906 -0.0668 29 1 4.3224 -2.3309 0.9634 30 1 6.3899 -3.3066 1.8834 31 1 5.0334 -3.6596 2.9847 32 1 5.7717 -7.8190 2.1869 33 1 1.6341 -8.4916 1.3969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:19 Heat of formation + Delta-G solvation = -192.641948 kcal Electronic energy + Delta-G solvation = -25420.133910 eV Core-core repulsion = 21208.573187 eV Total energy + Delta-G solvation = -4211.560723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.22048 -48.92604 -40.84718 -37.37846 -36.04838 -35.45012 -34.43776 -33.28763 -31.32005 -30.34821 -30.03137 -25.67243 -25.03162 -23.98597 -22.75322 -20.50006 -19.52470 -18.72261 -18.25303 -17.90684 -16.85728 -16.44144 -16.16944 -15.99113 -15.82926 -15.55621 -15.27501 -14.98368 -14.78076 -14.55784 -14.09286 -13.98297 -13.73612 -13.25013 -13.16043 -12.64904 -12.54897 -12.23083 -11.69705 -11.50747 -11.14493 -11.11095 -10.99937 -10.87376 -10.66181 -10.57820 -10.49842 -10.40319 -9.31379 -9.25174 -8.82025 -8.58767 -8.39657 -7.24777 -5.47996 0.71810 0.89372 2.05063 2.83416 3.15392 3.18482 3.19544 3.34394 3.82709 4.05487 4.21089 4.24536 4.40573 4.53992 4.65063 4.67559 4.81870 4.87722 4.93927 5.12808 5.37877 5.42886 5.49326 5.64833 5.70691 5.77834 5.85479 5.88480 6.09223 6.23599 6.40307 6.53199 7.06374 7.49642 7.62330 7.96640 8.54711 10.12862 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.004757 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.324809 B = 5884.479897 C = 6900.962665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.090 3.910 3 Si 1.085 2.915 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.274 1.274 7 C -1.086 5.086 8 H 0.106 0.894 9 S 2.688 3.312 10 O -1.008 7.008 11 O -1.010 7.010 12 N -1.118 6.118 13 C 0.209 3.791 14 H 0.109 0.891 15 C -0.183 4.183 16 C 0.061 3.939 17 O -0.306 6.306 18 C 0.203 3.797 19 C -0.204 4.204 20 C 0.165 3.835 21 F -0.128 7.128 22 C -0.231 4.231 23 C 0.186 3.814 24 F -0.113 7.113 25 C -0.215 4.215 26 H 0.277 0.723 27 H 0.405 0.595 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.268 -11.256 4.464 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.129 4.129 3 Si 0.908 3.092 4 H -0.204 1.204 5 H -0.200 1.200 6 H -0.199 1.199 7 C -1.221 5.221 8 H 0.124 0.876 9 S 2.790 3.210 10 O -0.997 6.997 11 O -1.000 7.000 12 N -0.870 5.870 13 C 0.101 3.899 14 H 0.127 0.873 15 C -0.222 4.222 16 C -0.014 4.014 17 O -0.219 6.219 18 C 0.155 3.845 19 C -0.224 4.224 20 C 0.145 3.855 21 F -0.106 7.106 22 C -0.251 4.251 23 C 0.165 3.835 24 F -0.091 7.091 25 C -0.218 4.218 26 H 0.089 0.911 27 H 0.237 0.763 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.167 0.833 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.209 -9.770 4.613 15.568 hybrid contribution 0.403 -1.683 -0.444 1.786 sum 11.612 -11.452 4.169 16.834 Atomic orbital electron populations 1.70787 1.07244 1.32125 1.37066 1.25976 0.95129 1.03930 0.87872 0.83390 0.74674 0.72930 0.78157 1.20439 1.19957 1.19950 1.31537 1.07939 1.12382 1.70208 0.87587 1.01132 0.72739 0.74125 0.73052 1.93422 1.72875 1.87662 1.45778 1.93435 1.73559 1.87809 1.45175 1.55828 1.55194 1.51087 1.24922 1.19215 0.91193 0.89065 0.90456 0.87299 1.22937 0.94995 1.04036 1.00192 1.23187 1.01434 0.77433 0.99357 1.85996 1.29479 1.19437 1.86994 1.17924 0.85092 0.89470 0.92002 1.20373 1.00291 0.90787 1.10917 1.16711 0.92850 0.77598 0.98362 1.91533 1.95969 1.30960 1.92177 1.20894 0.98278 0.94942 1.10987 1.16900 0.80344 0.90523 0.95703 1.91618 1.39696 1.88633 1.89112 1.20229 0.92833 0.97605 1.11151 0.91052 0.76320 0.89476 0.87276 0.86462 0.90725 0.83258 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.25 13.66 55.43 0.76 -24.49 16 2 C 0.09 2.46 5.46 -17.82 -0.10 2.36 16 3 Si 1.09 22.97 29.90 -169.99 -5.08 17.89 16 4 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -1.09 -28.29 9.69 30.60 0.30 -28.00 16 8 H 0.11 2.44 6.05 -52.49 -0.32 2.12 16 9 S 2.69 68.50 4.36 -107.50 -0.47 68.03 16 10 O -1.01 -28.13 16.94 -57.17 -0.97 -29.09 16 11 O -1.01 -28.78 17.65 -57.17 -1.01 -29.79 16 12 N -1.12 -21.54 3.79 -5.81 -0.02 -21.56 16 13 C 0.21 3.44 2.79 -69.01 -0.19 3.25 16 14 H 0.11 1.92 7.47 -51.93 -0.39 1.53 16 15 C -0.18 -2.46 5.77 -26.48 -0.15 -2.61 16 16 C 0.06 0.64 7.03 37.37 0.26 0.90 16 17 O -0.31 -3.60 10.27 -19.30 -0.20 -3.80 16 18 C 0.20 2.57 6.47 -39.21 -0.25 2.31 16 19 C -0.20 -2.29 9.91 -39.27 -0.39 -2.68 16 20 C 0.16 1.90 7.29 -39.51 -0.29 1.61 16 21 F -0.13 -1.43 17.27 2.25 0.04 -1.39 16 22 C -0.23 -2.87 10.00 -39.47 -0.39 -3.26 16 23 C 0.19 2.78 7.00 -39.38 -0.28 2.50 16 24 F -0.11 -2.00 15.45 2.25 0.03 -1.97 16 25 C -0.21 -3.14 5.50 -104.35 -0.57 -3.71 16 26 H 0.28 8.59 6.52 -40.82 -0.27 8.33 16 27 H 0.41 7.02 8.75 -34.48 -0.30 6.72 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.11 1.54 6.37 -51.93 -0.33 1.21 16 30 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -33.85 303.24 -6.92 -40.77 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -2.51 Total: 8.16 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -2.06 Total: -27.33 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.73 Total: -46.05 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -2.18 Total: -62.69 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.07 Total: -3.36 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.08 Total: 17.89 kcal Atomic # 16 Polarization: 68.50 SS G_CDS: -0.47 Total: 68.03 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.85 -6.92 -40.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.870 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds