Wall clock time and date at job start Tue Mar 31 2020 12:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99703 * 2 1 4 4 H 1.48500 * 109.47152 * 179.72261 * 3 2 1 5 5 H 1.48503 * 109.46749 * 299.72366 * 3 2 1 6 6 H 1.48499 * 109.46964 * 59.72072 * 3 2 1 7 7 C 1.37874 * 120.00403 * 179.72363 * 2 1 3 8 8 H 1.08002 * 120.00202 * 180.27974 * 7 2 1 9 9 S 1.76196 * 119.99831 * 0.27319 * 7 2 1 10 10 O 1.42097 * 106.40241 * 293.53972 * 9 7 2 11 11 O 1.42102 * 106.40179 * 66.46333 * 9 7 2 12 12 N 1.65607 * 107.21741 * 180.02562 * 9 7 2 13 13 C 1.46499 * 119.99767 * 65.60746 * 12 9 7 14 14 H 1.09005 * 109.44352 * 23.71003 * 13 12 9 15 15 C 1.53072 * 109.44014 * 263.78962 * 13 12 9 16 16 C 1.53411 * 108.28363 * 191.70945 * 15 13 12 17 17 O 1.42821 * 108.37404 * 64.74521 * 16 15 13 18 18 C 1.35859 * 117.87498 * 310.88190 * 17 16 15 19 19 C 1.39125 * 118.46457 * 196.98973 * 18 17 16 20 20 C 1.38197 * 120.25195 * 180.20995 * 19 18 17 21 21 F 1.35096 * 120.03394 * 179.97438 * 20 19 18 22 22 C 1.38477 * 119.93179 * 0.02562 * 20 19 18 23 23 C 1.38290 * 119.92685 * 359.90485 * 22 20 19 24 24 F 1.35104 * 119.84901 * 180.02562 * 23 22 20 25 25 C 1.38350 * 121.80078 * 17.05100 * 18 17 16 26 26 H 0.97005 * 119.99445 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00440 * 245.60739 * 12 9 7 28 28 H 1.08996 * 109.70341 * 311.41500 * 15 13 12 29 29 H 1.09003 * 109.69792 * 71.97425 * 15 13 12 30 30 H 1.09004 * 109.68223 * 184.45901 * 16 15 13 31 31 H 1.08994 * 109.68483 * 305.02135 * 16 15 13 32 32 H 1.08004 * 119.87514 * 0.21919 * 19 18 17 33 33 H 1.08005 * 120.03522 * 179.88589 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0068 5 1 1.8953 2.3936 -1.2159 6 1 1.8852 2.3995 1.2091 7 6 2.0046 -1.1940 0.0058 8 1 3.0846 -1.1939 0.0103 9 16 1.1237 -2.7199 0.0058 10 8 0.4465 -2.7922 1.2529 11 8 0.4568 -2.7983 -1.2465 12 7 2.2486 -3.9353 0.0142 13 6 3.1254 -4.1138 1.1741 14 1 2.6526 -3.6820 2.0563 15 6 4.4607 -3.4111 0.9164 16 6 5.4542 -3.8537 1.9982 17 8 5.6935 -5.2533 1.8443 18 6 4.6163 -6.0725 1.7245 19 6 4.7941 -7.4365 1.9329 20 6 3.7246 -8.3039 1.8163 21 9 3.9024 -9.6277 2.0191 22 6 2.4707 -7.8149 1.4903 23 6 2.2911 -6.4593 1.2841 24 9 1.0670 -5.9839 0.9666 25 6 3.3621 -5.5853 1.4025 26 1 -0.4849 -0.8401 0.0004 27 1 2.3269 -4.5289 -0.7489 28 1 4.8392 -3.6906 -0.0668 29 1 4.3224 -2.3309 0.9634 30 1 6.3899 -3.3066 1.8834 31 1 5.0334 -3.6596 2.9847 32 1 5.7717 -7.8190 2.1869 33 1 1.6341 -8.4916 1.3969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:18 Heat of formation + Delta-G solvation = -218.422484 kcal Electronic energy + Delta-G solvation = -25421.251838 eV Core-core repulsion = 21208.573187 eV Total energy + Delta-G solvation = -4212.678651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.18279 -50.13531 -41.85088 -38.34416 -37.81483 -37.14953 -36.58958 -35.37854 -32.49971 -31.48692 -31.03737 -27.75910 -26.12497 -25.05000 -23.81094 -21.59191 -21.53579 -20.11237 -19.68320 -18.97211 -18.54827 -17.61567 -17.33531 -17.18269 -16.98878 -16.85429 -16.65247 -16.43431 -16.09878 -15.75289 -15.66257 -15.51919 -15.16869 -14.59268 -14.42978 -14.27385 -13.59734 -13.20237 -13.11378 -13.01603 -12.98813 -12.79579 -12.77199 -12.64276 -12.49087 -11.90828 -11.87020 -11.72519 -11.21923 -10.90681 -10.38338 -9.86286 -9.54057 -9.40226 -7.65022 -0.33778 -0.11413 0.12622 1.48307 1.53518 1.75227 1.90270 2.14790 2.34722 2.57616 2.61412 2.81223 3.14443 3.26176 3.37711 3.47873 3.71661 3.85365 3.86331 3.93866 4.09873 4.19753 4.34768 4.56713 4.61665 4.66670 4.68431 4.81927 4.92360 5.01169 5.10255 5.40921 5.45749 5.81743 6.05862 6.12946 6.48776 7.93870 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.004757 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.324809 B = 5884.479897 C = 6900.962665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.034 3.966 3 Si 1.126 2.874 4 H -0.240 1.240 5 H -0.268 1.268 6 H -0.264 1.264 7 C -1.090 5.090 8 H 0.136 0.864 9 S 2.692 3.308 10 O -1.042 7.042 11 O -1.049 7.049 12 N -1.104 6.104 13 C 0.199 3.801 14 H 0.088 0.912 15 C -0.181 4.181 16 C 0.063 3.937 17 O -0.301 6.301 18 C 0.205 3.795 19 C -0.188 4.188 20 C 0.172 3.828 21 F -0.122 7.122 22 C -0.225 4.225 23 C 0.156 3.844 24 F -0.139 7.139 25 C -0.225 4.225 26 H 0.255 0.745 27 H 0.414 0.586 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.155 0.845 31 H 0.083 0.917 32 H 0.178 0.822 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.004 -11.627 5.088 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.176 4.176 3 Si 0.940 3.060 4 H -0.163 1.163 5 H -0.193 1.193 6 H -0.189 1.189 7 C -1.225 5.225 8 H 0.154 0.846 9 S 2.795 3.205 10 O -1.031 7.031 11 O -1.039 7.039 12 N -0.861 5.861 13 C 0.092 3.908 14 H 0.106 0.894 15 C -0.220 4.220 16 C -0.011 4.011 17 O -0.213 6.213 18 C 0.157 3.843 19 C -0.207 4.207 20 C 0.152 3.848 21 F -0.100 7.100 22 C -0.245 4.245 23 C 0.136 3.864 24 F -0.117 7.117 25 C -0.229 4.229 26 H 0.065 0.935 27 H 0.248 0.752 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.172 0.828 31 H 0.102 0.898 32 H 0.196 0.804 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 14.954 -10.187 5.239 18.837 hybrid contribution -0.698 -1.733 -0.600 1.962 sum 14.256 -11.920 4.639 19.153 Atomic orbital electron populations 1.70949 1.08796 1.30713 1.40512 1.27881 0.94991 1.08580 0.86160 0.83020 0.75545 0.68617 0.78822 1.16275 1.19254 1.18859 1.31867 1.09616 1.12271 1.68751 0.84588 1.00639 0.73233 0.74974 0.71685 1.93368 1.74451 1.88394 1.46933 1.93369 1.75335 1.88634 1.46598 1.55230 1.54796 1.49695 1.26400 1.19454 0.91931 0.91080 0.88380 0.89399 1.22915 0.93915 1.03242 1.01917 1.23400 1.02298 0.76917 0.98494 1.86017 1.28707 1.19878 1.86731 1.17962 0.84385 0.90241 0.91675 1.20633 1.01284 0.89905 1.08891 1.16673 0.92520 0.77882 0.97704 1.91559 1.95877 1.30531 1.92018 1.21008 0.99403 0.94035 1.10023 1.17209 0.79659 0.91774 0.97776 1.91553 1.41339 1.89087 1.89772 1.20104 0.93844 0.96258 1.12689 0.93453 0.75186 0.88810 0.87907 0.82777 0.89847 0.80442 0.81828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.23 13.66 21.45 0.29 -53.94 16 2 C 0.03 1.86 5.46 84.65 0.46 2.32 16 3 Si 1.13 44.40 29.90 68.60 2.05 46.45 16 4 H -0.24 -7.89 7.11 99.48 0.71 -7.18 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -1.09 -56.84 9.69 67.73 0.66 -56.18 16 8 H 0.14 6.04 6.05 -2.91 -0.02 6.03 16 9 S 2.69 142.10 4.36 -56.49 -0.25 141.86 16 10 O -1.04 -61.07 16.94 -128.00 -2.17 -63.24 16 11 O -1.05 -62.51 17.65 -128.00 -2.26 -64.77 16 12 N -1.10 -43.43 3.79 -172.31 -0.65 -44.08 16 13 C 0.20 6.50 2.79 44.30 0.12 6.62 16 14 H 0.09 3.20 7.47 -2.38 -0.02 3.18 16 15 C -0.18 -4.50 5.77 30.76 0.18 -4.32 16 16 C 0.06 1.10 7.03 72.12 0.51 1.61 16 17 O -0.30 -5.95 10.27 -91.97 -0.94 -6.90 16 18 C 0.21 4.65 6.47 22.51 0.15 4.80 16 19 C -0.19 -3.56 9.91 22.47 0.22 -3.34 16 20 C 0.17 3.51 7.29 22.32 0.16 3.68 16 21 F -0.12 -2.35 17.27 44.97 0.78 -1.57 16 22 C -0.23 -5.32 10.00 22.34 0.22 -5.10 16 23 C 0.16 4.67 7.00 22.40 0.16 4.83 16 24 F -0.14 -5.19 15.45 44.97 0.69 -4.50 16 25 C -0.23 -6.40 5.50 -19.69 -0.11 -6.51 16 26 H 0.25 16.61 6.52 -92.70 -0.60 16.00 16 27 H 0.41 14.72 8.75 -96.74 -0.85 13.87 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.10 2.68 6.37 -2.39 -0.02 2.66 16 30 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -76.46 303.24 0.79 -75.67 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.51 Total: 26.60 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 2.73 Total: -51.58 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -0.36 Total: -98.02 kcal Atomic # 8 Polarization: -129.53 SS G_CDS: -5.37 Total: -134.90 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 1.47 Total: -6.07 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.05 Total: 46.45 kcal Atomic # 16 Polarization: 142.10 SS G_CDS: -0.25 Total: 141.86 kcal Total: -76.46 0.79 -75.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.752 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds