Wall clock time and date at job start Tue Mar 31 2020 12:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39047 * 120.56573 * 224.38099 * 3 2 1 5 5 C 1.39454 * 119.79985 * 180.25717 * 4 3 2 6 6 C 1.47865 * 119.50656 * 179.70190 * 5 4 3 7 7 C 1.39922 * 120.12352 * 64.74427 * 6 5 4 8 8 F 1.35092 * 120.03143 * 0.02866 * 7 6 5 9 9 C 1.38097 * 119.93045 * 179.74632 * 7 6 5 10 10 C 1.38570 * 120.19718 * 0.55289 * 9 7 6 11 11 F 1.35097 * 119.87061 * 179.71803 * 10 9 7 12 12 C 1.38981 * 120.26048 * 359.70547 * 10 9 7 13 13 O 1.36050 * 119.97542 * 179.97438 * 12 10 9 14 14 C 1.38513 * 120.05686 * 0.02562 * 12 10 9 15 15 F 1.35103 * 120.09633 * 180.02562 * 14 12 10 16 16 C 1.40055 * 120.99149 * 359.73005 * 5 4 3 17 17 C 1.35958 * 121.18621 * 359.97438 * 16 5 4 18 18 C 1.41076 * 120.11175 * 359.97438 * 17 16 5 19 19 C 1.40397 * 120.47828 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99882 * 205.41754 * 19 18 17 21 21 C 1.40270 * 120.00184 * 25.42340 * 19 18 17 22 22 N 1.30653 * 119.99849 * 16.92397 * 21 19 18 23 23 Si 1.86805 * 120.00057 * 196.91840 * 21 19 18 24 24 H 1.48493 * 109.47211 * 265.18173 * 23 21 19 25 25 H 1.48499 * 109.46937 * 25.18347 * 23 21 19 26 26 H 1.48499 * 109.46633 * 145.17935 * 23 21 19 27 27 H 1.07999 * 120.09465 * 359.96020 * 4 3 2 28 28 H 1.07997 * 119.90020 * 180.28057 * 9 7 6 29 29 H 0.96695 * 114.00262 * 270.01940 * 13 12 10 30 30 H 1.07998 * 119.40846 * 180.02562 * 16 5 4 31 31 H 1.07994 * 119.94509 * 180.02562 * 17 16 5 32 32 H 0.96999 * 120.00204 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 0.8566 0.8374 5 6 4.6691 0.8477 0.8205 6 6 5.4141 1.7654 1.7089 7 6 5.3265 1.6231 3.0981 8 9 4.5609 0.6458 3.6307 9 6 6.0281 2.4791 3.9240 10 6 6.8100 3.4863 3.3814 11 9 7.4891 4.3235 4.1957 12 6 6.8986 3.6383 2.0028 13 8 7.6675 4.6295 1.4763 14 6 6.2038 2.7823 1.1643 15 9 6.2897 2.9291 -0.1760 16 6 5.3746 -0.0169 -0.0258 17 6 4.7244 -0.8746 -0.8565 18 6 3.3142 -0.9068 -0.8779 19 6 2.6349 -1.7898 -1.7324 20 1 1.6323 -1.5591 -2.0610 21 6 3.2583 -2.9717 -2.1590 22 7 4.3089 -3.4214 -1.5258 23 14 2.5863 -3.9027 -3.6325 24 1 1.6667 -4.9710 -3.1657 25 1 1.8478 -2.9648 -4.5158 26 1 3.7105 -4.5123 -4.3875 27 1 2.7453 1.5297 1.4954 28 1 5.9637 2.3659 4.9961 29 1 7.1962 5.4627 1.3400 30 1 6.4545 -0.0028 -0.0178 31 1 5.2885 -1.5330 -1.5005 32 1 4.7403 -4.2385 -1.8211 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235999031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:39 Heat of formation + Delta-G solvation = -110.884939 kcal Electronic energy + Delta-G solvation = -25148.251981 eV Core-core repulsion = 20817.165347 eV Total energy + Delta-G solvation = -4331.086635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.056 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.11708 -48.80263 -48.77979 -39.24497 -37.97233 -36.66162 -35.19565 -34.34432 -31.60205 -30.06031 -29.67784 -28.83143 -25.80570 -23.13424 -22.98519 -22.27768 -20.96999 -18.79311 -18.37188 -18.00999 -17.83476 -17.19119 -16.34496 -15.90152 -15.66653 -15.64730 -15.33972 -15.24021 -14.96927 -14.47904 -14.42964 -14.09101 -13.91594 -13.23754 -13.00341 -12.79111 -12.70650 -12.27977 -12.09709 -11.86604 -11.73859 -11.60976 -11.40685 -11.25057 -11.01783 -10.90764 -10.69092 -10.10183 -9.96629 -9.62190 -8.82940 -8.63126 -7.90614 -7.68796 -7.31155 -4.89143 0.69201 0.76773 2.09004 2.43246 2.83508 2.84625 2.91620 3.08578 3.43245 3.57664 3.81318 3.88453 4.02872 4.25227 4.26416 4.33143 4.69075 4.84269 5.26789 5.29328 5.48353 5.65854 5.75052 5.81630 5.88753 5.91237 6.14621 6.51962 6.55990 6.67529 6.83765 7.06714 7.28823 7.33318 7.49847 7.61102 7.71358 8.06903 8.25234 8.39926 8.72468 9.56396 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.003661 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.470688 B = 7646.043144 C = 8131.485697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.300 3.700 3 C -0.188 4.188 4 C 0.013 3.987 5 C -0.224 4.224 6 C -0.050 4.050 7 C 0.149 3.851 8 F -0.113 7.113 9 C -0.188 4.188 10 C 0.112 3.888 11 F -0.124 7.124 12 C 0.026 3.974 13 O -0.475 6.475 14 C 0.132 3.868 15 F -0.108 7.108 16 C -0.044 4.044 17 C -0.164 4.164 18 C 0.158 3.842 19 C -0.414 4.414 20 H 0.090 0.910 21 C 0.074 3.926 22 N -0.750 5.750 23 Si 0.918 3.082 24 H -0.264 1.264 25 H -0.254 1.254 26 H -0.268 1.268 27 H 0.100 0.900 28 H 0.155 0.845 29 H 0.391 0.609 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 8.004 4.942 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.010 4.010 3 C -0.194 4.194 4 C -0.008 4.008 5 C -0.225 4.225 6 C -0.053 4.053 7 C 0.129 3.871 8 F -0.091 7.091 9 C -0.208 4.208 10 C 0.091 3.909 11 F -0.102 7.102 12 C -0.021 4.021 13 O -0.285 6.285 14 C 0.111 3.889 15 F -0.086 7.086 16 C -0.063 4.063 17 C -0.183 4.183 18 C 0.152 3.848 19 C -0.440 4.440 20 H 0.108 0.892 21 C -0.151 4.151 22 N -0.371 5.371 23 Si 0.740 3.260 24 H -0.188 1.188 25 H -0.177 1.177 26 H -0.192 1.192 27 H 0.118 0.882 28 H 0.172 0.828 29 H 0.247 0.753 30 H 0.113 0.887 31 H 0.146 0.854 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.243 7.369 4.962 10.858 hybrid contribution -0.008 -0.101 -0.481 0.492 sum 6.235 7.268 4.481 10.573 Atomic orbital electron populations 1.81035 1.12638 1.12470 1.12267 1.25698 0.92617 0.91235 0.91432 1.16680 0.83296 1.10772 1.08656 1.20413 0.92048 0.94209 0.94109 1.17245 0.91723 1.05972 1.07604 1.18945 0.98440 0.95990 0.91885 1.17136 0.92492 0.87585 0.89923 1.91576 1.72375 1.59210 1.85929 1.20862 1.01082 0.96970 1.01867 1.17188 0.95676 0.91664 0.86336 1.91516 1.77585 1.69333 1.71789 1.18138 0.99375 0.95442 0.89161 1.84949 1.36965 1.22762 1.83807 1.17574 0.97514 0.95703 0.78107 1.91559 1.94293 1.94637 1.28126 1.20330 0.97618 0.94096 0.94243 1.20869 0.93662 1.01283 1.02447 1.18501 0.91605 0.87812 0.86892 1.19872 1.01701 1.01595 1.20805 0.89225 1.26207 0.93917 0.97668 0.97314 1.69711 1.15314 1.18512 1.33565 0.86094 0.79866 0.79776 0.80255 1.18825 1.17696 1.19236 0.88204 0.82779 0.75327 0.88713 0.85444 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.89 18.54 41.84 0.78 -11.12 16 2 C 0.30 6.87 14.29 -22.47 -0.32 6.54 16 3 C -0.19 -4.20 5.93 -104.27 -0.62 -4.81 16 4 C 0.01 0.26 9.21 -38.83 -0.36 -0.09 16 5 C -0.22 -4.30 4.73 -104.82 -0.50 -4.80 16 6 C -0.05 -0.82 5.28 -104.75 -0.55 -1.38 16 7 C 0.15 2.18 7.23 -39.00 -0.28 1.90 16 8 F -0.11 -1.81 16.64 2.25 0.04 -1.77 16 9 C -0.19 -2.26 9.98 -39.51 -0.39 -2.66 16 10 C 0.11 1.38 7.31 -39.18 -0.29 1.09 16 11 F -0.12 -1.50 17.10 2.25 0.04 -1.46 16 12 C 0.03 0.34 6.71 -39.20 -0.26 0.08 16 13 O -0.48 -5.60 13.22 -19.90 -0.26 -5.87 16 14 C 0.13 1.99 7.24 -38.90 -0.28 1.71 16 15 F -0.11 -1.77 16.50 2.25 0.04 -1.74 16 16 C -0.04 -0.88 9.38 -39.72 -0.37 -1.25 16 17 C -0.16 -3.61 8.62 -39.32 -0.34 -3.94 16 18 C 0.16 3.67 5.73 -104.61 -0.60 3.07 16 19 C -0.41 -9.67 8.55 -38.01 -0.33 -9.99 16 20 H 0.09 2.12 7.38 -52.48 -0.39 1.73 16 21 C 0.07 1.59 5.16 -17.29 -0.09 1.50 16 22 N -0.75 -16.38 10.96 55.56 0.61 -15.77 16 23 Si 0.92 16.35 29.59 -169.99 -5.03 11.32 16 24 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 25 H -0.25 -4.58 7.11 56.52 0.40 -4.18 16 26 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 27 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.39 2.67 9.06 45.56 0.41 3.08 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.13 2.84 6.20 -52.49 -0.33 2.52 16 32 H 0.29 5.71 8.29 -40.82 -0.34 5.38 16 LS Contribution 314.32 15.07 4.74 4.74 Total: -1.00 -25.57 314.32 -5.34 -30.91 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -0.70 Total: 3.78 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -5.58 Total: -13.02 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 1.38 Total: -26.89 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.26 Total: -5.87 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.11 Total: -4.97 kcal Atomic # 14 Polarization: 16.35 SS G_CDS: -5.03 Total: 11.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -25.57 -5.34 -30.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235999031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.979 kcal (2) G-P(sol) polarization free energy of solvation -25.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds