Wall clock time and date at job start Tue Mar 31 2020 12:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39047 * 120.56573 * 224.38099 * 3 2 1 5 5 C 1.39454 * 119.79985 * 180.25717 * 4 3 2 6 6 C 1.47865 * 119.50656 * 179.70190 * 5 4 3 7 7 C 1.39922 * 120.12352 * 64.74427 * 6 5 4 8 8 F 1.35092 * 120.03143 * 0.02866 * 7 6 5 9 9 C 1.38097 * 119.93045 * 179.74632 * 7 6 5 10 10 C 1.38570 * 120.19718 * 0.55289 * 9 7 6 11 11 F 1.35097 * 119.87061 * 179.71803 * 10 9 7 12 12 C 1.38981 * 120.26048 * 359.70547 * 10 9 7 13 13 O 1.36050 * 119.97542 * 179.97438 * 12 10 9 14 14 C 1.38513 * 120.05686 * 0.02562 * 12 10 9 15 15 F 1.35103 * 120.09633 * 180.02562 * 14 12 10 16 16 C 1.40055 * 120.99149 * 359.73005 * 5 4 3 17 17 C 1.35958 * 121.18621 * 359.97438 * 16 5 4 18 18 C 1.41076 * 120.11175 * 359.97438 * 17 16 5 19 19 C 1.40397 * 120.47828 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99882 * 205.41754 * 19 18 17 21 21 C 1.40270 * 120.00184 * 25.42340 * 19 18 17 22 22 N 1.30653 * 119.99849 * 16.92397 * 21 19 18 23 23 Si 1.86805 * 120.00057 * 196.91840 * 21 19 18 24 24 H 1.48493 * 109.47211 * 265.18173 * 23 21 19 25 25 H 1.48499 * 109.46937 * 25.18347 * 23 21 19 26 26 H 1.48499 * 109.46633 * 145.17935 * 23 21 19 27 27 H 1.07999 * 120.09465 * 359.96020 * 4 3 2 28 28 H 1.07997 * 119.90020 * 180.28057 * 9 7 6 29 29 H 0.96695 * 114.00262 * 270.01940 * 13 12 10 30 30 H 1.07998 * 119.40846 * 180.02562 * 16 5 4 31 31 H 1.07994 * 119.94509 * 180.02562 * 17 16 5 32 32 H 0.96999 * 120.00204 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 0.8566 0.8374 5 6 4.6691 0.8477 0.8205 6 6 5.4141 1.7654 1.7089 7 6 5.3265 1.6231 3.0981 8 9 4.5609 0.6458 3.6307 9 6 6.0281 2.4791 3.9240 10 6 6.8100 3.4863 3.3814 11 9 7.4891 4.3235 4.1957 12 6 6.8986 3.6383 2.0028 13 8 7.6675 4.6295 1.4763 14 6 6.2038 2.7823 1.1643 15 9 6.2897 2.9291 -0.1760 16 6 5.3746 -0.0169 -0.0258 17 6 4.7244 -0.8746 -0.8565 18 6 3.3142 -0.9068 -0.8779 19 6 2.6349 -1.7898 -1.7324 20 1 1.6323 -1.5591 -2.0610 21 6 3.2583 -2.9717 -2.1590 22 7 4.3089 -3.4214 -1.5258 23 14 2.5863 -3.9027 -3.6325 24 1 1.6667 -4.9710 -3.1657 25 1 1.8478 -2.9648 -4.5158 26 1 3.7105 -4.5123 -4.3875 27 1 2.7453 1.5297 1.4954 28 1 5.9637 2.3659 4.9961 29 1 7.1962 5.4627 1.3400 30 1 6.4545 -0.0028 -0.0178 31 1 5.2885 -1.5330 -1.5005 32 1 4.7403 -4.2385 -1.8211 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235999031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:38 Heat of formation + Delta-G solvation = -123.268505 kcal Electronic energy + Delta-G solvation = -25148.788973 eV Core-core repulsion = 20817.165347 eV Total energy + Delta-G solvation = -4331.623626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.056 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.11169 -50.00942 -49.98272 -40.38301 -39.48263 -37.81079 -36.97140 -35.92106 -33.02874 -31.72755 -30.87814 -30.17107 -27.33761 -24.35744 -24.29689 -23.81270 -22.46889 -19.93718 -19.56378 -19.46640 -19.07133 -18.63995 -17.51973 -17.20940 -17.01553 -16.81172 -16.51265 -16.37243 -16.23192 -15.84170 -15.71231 -15.47327 -15.33684 -14.60663 -14.57174 -14.31354 -13.93196 -13.80254 -13.59347 -13.53963 -13.26962 -13.17759 -12.88273 -12.61319 -12.36117 -12.29542 -11.93332 -11.67355 -11.59308 -11.22187 -10.01101 -9.77509 -9.56562 -9.28019 -8.91838 -6.60999 -0.41595 -0.31619 0.38985 0.84959 1.36013 1.44029 1.51064 1.95594 2.00169 2.10883 2.30020 2.36439 2.59935 2.92313 3.15426 3.19675 3.45045 3.50478 3.69015 3.80451 4.23508 4.39352 4.49577 4.53929 4.66034 4.76161 4.79816 4.87772 5.01425 5.17032 5.39924 5.45541 5.67917 5.82192 5.95815 6.03488 6.37180 6.55198 6.55699 6.70393 6.92413 7.99213 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.003661 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.470688 B = 7646.043144 C = 8131.485697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.306 3.694 3 C -0.209 4.209 4 C 0.011 3.989 5 C -0.210 4.210 6 C -0.072 4.072 7 C 0.143 3.857 8 F -0.124 7.124 9 C -0.164 4.164 10 C 0.124 3.876 11 F -0.117 7.117 12 C 0.042 3.958 13 O -0.483 6.483 14 C 0.123 3.877 15 F -0.120 7.120 16 C -0.043 4.043 17 C -0.178 4.178 18 C 0.138 3.862 19 C -0.448 4.448 20 H 0.075 0.925 21 C 0.045 3.955 22 N -0.774 5.774 23 Si 0.980 3.020 24 H -0.263 1.263 25 H -0.261 1.261 26 H -0.251 1.251 27 H 0.118 0.882 28 H 0.186 0.814 29 H 0.415 0.585 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 9.117 6.142 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.003 4.003 3 C -0.215 4.215 4 C -0.010 4.010 5 C -0.211 4.211 6 C -0.074 4.074 7 C 0.123 3.877 8 F -0.102 7.102 9 C -0.183 4.183 10 C 0.104 3.896 11 F -0.095 7.095 12 C -0.006 4.006 13 O -0.296 6.296 14 C 0.102 3.898 15 F -0.099 7.099 16 C -0.062 4.062 17 C -0.197 4.197 18 C 0.132 3.868 19 C -0.474 4.474 20 H 0.093 0.907 21 C -0.178 4.178 22 N -0.395 5.395 23 Si 0.799 3.201 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.174 1.174 27 H 0.136 0.864 28 H 0.203 0.797 29 H 0.275 0.725 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.766 8.514 6.175 13.074 hybrid contribution -0.307 -0.242 -0.697 0.799 sum 7.458 8.273 5.478 12.413 Atomic orbital electron populations 1.81007 1.13026 1.13322 1.13100 1.25874 0.92796 0.90725 0.90925 1.16869 0.83073 1.11929 1.09637 1.20631 0.92619 0.93988 0.93780 1.17493 0.91647 1.05252 1.06731 1.18796 0.99735 0.96583 0.92296 1.17158 0.93063 0.88066 0.89440 1.91557 1.72840 1.59836 1.85957 1.21042 0.99018 0.95202 1.03076 1.17136 0.95120 0.91406 0.85980 1.91549 1.77359 1.69084 1.71499 1.18050 0.98132 0.95168 0.89230 1.84894 1.37316 1.23692 1.83688 1.17585 0.98119 0.96259 0.77811 1.91530 1.94484 1.94771 1.29068 1.20572 0.98563 0.93415 0.93646 1.20847 0.93293 1.02126 1.03404 1.18760 0.92355 0.88330 0.87357 1.19952 1.01653 1.03139 1.22692 0.90657 1.26839 0.94065 0.97682 0.99201 1.69701 1.16022 1.19279 1.34536 0.85197 0.79537 0.78230 0.77114 1.18791 1.18441 1.17435 0.86380 0.79669 0.72545 0.87042 0.86172 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.26 18.54 19.00 0.35 -24.91 16 2 C 0.31 14.38 14.29 88.33 1.26 15.64 16 3 C -0.21 -9.57 5.93 -19.64 -0.12 -9.69 16 4 C 0.01 0.42 9.21 22.76 0.21 0.63 16 5 C -0.21 -7.96 4.73 -19.99 -0.09 -8.05 16 6 C -0.07 -2.23 5.28 -19.95 -0.11 -2.33 16 7 C 0.14 3.83 7.23 22.64 0.16 4.00 16 8 F -0.12 -3.75 16.64 44.97 0.75 -3.00 16 9 C -0.16 -3.31 9.98 22.32 0.22 -3.09 16 10 C 0.12 2.57 7.31 22.53 0.16 2.74 16 11 F -0.12 -2.33 17.10 44.97 0.77 -1.56 16 12 C 0.04 0.96 6.71 22.51 0.15 1.11 16 13 O -0.48 -9.79 13.22 -94.12 -1.24 -11.04 16 14 C 0.12 3.46 7.24 22.71 0.16 3.63 16 15 F -0.12 -3.80 16.50 44.97 0.74 -3.06 16 16 C -0.04 -1.73 9.38 22.18 0.21 -1.52 16 17 C -0.18 -8.03 8.62 22.44 0.19 -7.84 16 18 C 0.14 6.64 5.73 -19.86 -0.11 6.53 16 19 C -0.45 -21.82 8.55 23.29 0.20 -21.62 16 20 H 0.08 3.75 7.38 -2.91 -0.02 3.73 16 21 C 0.04 1.97 5.16 85.36 0.44 2.41 16 22 N -0.77 -34.36 10.96 21.88 0.24 -34.12 16 23 Si 0.98 33.85 29.59 68.60 2.03 35.88 16 24 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 25 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 26 H -0.25 -7.90 7.11 99.48 0.71 -7.19 16 27 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 28 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 29 H 0.41 4.22 9.06 -74.06 -0.67 3.55 16 30 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.12 5.53 6.20 -2.91 -0.02 5.51 16 32 H 0.30 11.88 8.29 -92.71 -0.77 11.11 16 Total: -1.00 -55.68 314.32 7.16 -48.53 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.57 Total: 10.73 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 2.95 Total: -17.45 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.59 Total: -59.03 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.24 Total: -11.04 kcal Atomic # 9 Polarization: -9.88 SS G_CDS: 2.26 Total: -7.62 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Total: -55.68 7.16 -48.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235999031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.743 kcal (2) G-P(sol) polarization free energy of solvation -55.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds