Wall clock time and date at job start Tue Mar 31 2020 12:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76202 * 102.99796 * 2 1 4 4 C 1.39019 * 120.18048 * 270.01796 * 3 2 1 5 5 Cl 1.73595 * 119.98178 * 359.96312 * 4 3 2 6 6 C 1.38119 * 120.03914 * 179.97438 * 4 3 2 7 7 C 1.50700 * 119.79190 * 180.02562 * 6 4 3 8 8 C 1.38655 * 120.41512 * 359.97438 * 6 4 3 9 9 C 1.37777 * 120.36844 * 359.78111 * 8 6 4 10 10 C 1.39735 * 119.94706 * 0.47163 * 9 8 6 11 11 C 1.47576 * 120.20536 * 179.78374 * 10 9 8 12 12 C 1.39490 * 120.79624 * 64.72396 * 11 10 9 13 13 N 1.31604 * 120.63568 * 180.23341 * 12 11 10 14 14 C 1.32274 * 122.52532 * 359.47561 * 13 12 11 15 15 C 1.36397 * 121.54780 * 0.52563 * 14 13 12 16 16 C 1.41166 * 119.12213 * 359.75281 * 15 14 13 17 17 C 1.40811 * 121.11800 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99815 * 204.11462 * 17 16 15 19 19 C 1.40134 * 119.99850 * 24.12015 * 17 16 15 20 20 N 1.30725 * 119.99950 * 14.43871 * 19 17 16 21 21 Si 1.86794 * 119.99945 * 194.43714 * 19 17 16 22 22 H 1.48503 * 109.46937 * 60.00276 * 21 19 17 23 23 H 1.48504 * 109.47338 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47444 * 299.99955 * 21 19 17 25 25 H 1.09001 * 109.47094 * 60.00179 * 1 2 3 26 26 H 1.08999 * 109.46827 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47109 * 299.99804 * 1 2 3 28 28 H 1.08999 * 109.47292 * 89.99888 * 7 6 4 29 29 H 1.08995 * 109.46814 * 210.00482 * 7 6 4 30 30 H 1.09000 * 109.46988 * 330.00123 * 7 6 4 31 31 H 1.08001 * 119.81471 * 180.02562 * 8 6 4 32 32 H 1.08000 * 120.02913 * 180.23342 * 9 8 6 33 33 H 1.08004 * 119.68221 * 359.95331 * 12 11 10 34 34 H 1.07993 * 119.22605 * 180.27784 * 14 13 12 35 35 H 1.07998 * 120.43953 * 179.76886 * 15 14 13 36 36 H 0.96995 * 119.99431 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 2.3672 2.3979 -1.2017 5 17 2.1734 1.5562 -2.7076 6 6 2.6773 3.7438 -1.1983 7 6 2.8454 4.4768 -2.5043 8 6 2.8338 4.4251 -0.0009 9 6 2.6773 3.7680 1.2000 10 6 2.3687 2.4052 1.2144 11 6 2.2045 1.6947 2.4973 12 6 1.1659 2.0240 3.3683 13 7 1.0251 1.3914 4.5137 14 6 1.8375 0.4191 4.8937 15 6 2.8848 0.0196 4.1166 16 6 3.1018 0.6566 2.8757 17 6 4.1697 0.2774 2.0399 18 1 4.5669 0.9775 1.3200 19 6 4.7169 -1.0086 2.1422 20 7 4.0753 -1.9420 2.7950 21 14 6.3632 -1.3892 1.3458 22 1 7.4086 -0.5074 1.9244 23 1 6.7187 -2.8089 1.5980 24 1 6.2714 -1.1539 -0.1175 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8846 4.8842 -2.8187 29 1 3.5602 5.2895 -2.3753 30 1 3.2133 3.7866 -3.2635 31 1 3.0759 5.4776 -0.0095 32 1 2.7968 4.3049 2.1294 33 1 0.4732 2.8088 3.1021 34 1 1.6700 -0.0670 5.8433 35 1 3.5392 -0.7738 4.4462 36 1 4.4543 -2.8320 2.8661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245834366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:40 Heat of formation + Delta-G solvation = 27.008224 kcal Electronic energy + Delta-G solvation = -22084.055381 eV Core-core repulsion = 18876.958099 eV Total energy + Delta-G solvation = -3207.097282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69131 -39.57010 -37.36035 -35.99217 -34.54121 -32.20858 -31.74844 -31.13811 -29.64760 -28.20239 -27.03408 -23.92020 -23.69069 -23.07413 -21.72994 -19.42823 -18.03915 -17.42166 -17.15630 -16.89036 -16.25126 -16.05588 -15.57049 -15.20264 -15.05709 -14.72482 -14.39115 -14.28374 -14.06046 -13.98239 -13.87815 -13.30667 -13.16968 -13.11410 -13.00084 -12.82160 -12.66186 -12.44378 -12.20329 -11.98783 -11.82329 -11.54323 -11.26121 -10.96568 -9.99021 -9.86165 -9.61591 -9.55867 -9.12188 -8.61671 -8.15703 -6.42112 -0.03862 0.18955 0.91938 0.95364 1.06914 1.29263 1.36393 1.43999 1.56930 1.95747 2.17292 2.68013 2.85159 3.75719 3.84358 3.99617 4.06971 4.23969 4.29301 4.31357 4.33820 4.48910 4.54884 4.75456 4.81967 4.83993 4.89714 5.03491 5.05333 5.20362 5.25176 5.30725 5.41639 5.49127 5.57176 5.67718 5.85049 6.00509 6.26202 6.58099 6.87429 6.91218 7.78839 8.27056 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.006881 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.988928 B = 4068.017366 C = 4939.789933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.142 6.142 3 C -0.112 4.112 4 C -0.012 4.012 5 Cl -0.056 7.056 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.077 4.077 9 C -0.131 4.131 10 C 0.046 3.954 11 C -0.236 4.236 12 C 0.122 3.878 13 N -0.593 5.593 14 C 0.076 3.924 15 C -0.228 4.228 16 C 0.145 3.855 17 C -0.428 4.428 18 H 0.063 0.937 19 C 0.055 3.945 20 N -0.791 5.791 21 Si 0.954 3.046 22 H -0.258 1.258 23 H -0.263 1.263 24 H -0.267 1.267 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.169 0.831 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 8.175 -9.277 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.091 5.909 3 C -0.225 4.225 4 C -0.042 4.042 5 Cl -0.027 7.027 6 C -0.107 4.107 7 C -0.165 4.165 8 C -0.095 4.095 9 C -0.150 4.150 10 C 0.042 3.958 11 C -0.242 4.242 12 C -0.035 4.035 13 N -0.308 5.308 14 C -0.071 4.071 15 C -0.250 4.250 16 C 0.137 3.863 17 C -0.458 4.458 18 H 0.081 0.919 19 C -0.164 4.164 20 N -0.416 5.416 21 Si 0.776 3.224 22 H -0.182 1.182 23 H -0.187 1.187 24 H -0.192 1.192 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.187 0.813 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.035 7.070 -8.747 11.295 hybrid contribution 0.491 -0.022 -0.657 0.820 sum -0.543 7.049 -9.404 11.765 Atomic orbital electron populations 1.23487 0.95774 1.06313 1.04176 1.86011 1.05529 1.02300 1.97087 1.21954 1.09258 0.97668 0.93598 1.21231 1.03675 0.93041 0.86231 1.98317 1.95590 1.78315 1.30503 1.20112 1.01321 0.91066 0.98227 1.20866 1.03642 1.00230 0.91793 1.21350 0.97103 1.01190 0.89852 1.21650 1.00671 0.93116 0.99600 1.19023 0.92883 0.92894 0.90975 1.19465 1.01810 1.06663 0.96258 1.22314 0.94882 0.96899 0.89452 1.67342 1.31905 1.12680 1.18843 1.21950 0.92275 0.93979 0.98944 1.21932 1.01867 1.05150 0.96086 1.17798 0.89889 0.88027 0.90610 1.19266 1.12969 0.97751 1.15835 0.91878 1.26468 1.00443 0.95382 0.94150 1.69767 1.36733 1.03377 1.31683 0.85644 0.78554 0.78654 0.79556 1.18227 1.18696 1.19169 0.90008 0.87545 0.92066 0.89633 0.89002 0.91506 0.81349 0.84496 0.84543 0.84719 0.86446 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 10.72 113.37 1.22 -3.27 16 2 S -0.14 -6.01 18.22 -56.49 -1.03 -7.04 16 3 C -0.11 -4.46 5.20 23.00 0.12 -4.34 16 4 C -0.01 -0.40 6.33 22.43 0.14 -0.26 16 5 Cl -0.06 -1.72 26.14 -2.72 -0.07 -1.79 16 6 C -0.10 -2.86 5.89 -19.79 -0.12 -2.98 16 7 C -0.11 -2.09 9.60 71.24 0.68 -1.41 16 8 C -0.08 -1.99 9.67 22.26 0.22 -1.78 16 9 C -0.13 -4.25 9.75 22.52 0.22 -4.03 16 10 C 0.05 1.84 4.50 -19.90 -0.09 1.75 16 11 C -0.24 -10.79 4.66 -19.49 -0.09 -10.88 16 12 C 0.12 5.44 10.92 85.03 0.93 6.36 16 13 N -0.59 -27.96 10.32 -196.12 -2.02 -29.99 16 14 C 0.08 3.60 11.08 84.20 0.93 4.53 16 15 C -0.23 -11.51 8.73 22.56 0.20 -11.31 16 16 C 0.14 7.29 5.05 -20.91 -0.11 7.19 16 17 C -0.43 -21.47 6.74 23.36 0.16 -21.32 16 18 H 0.06 3.25 7.17 -2.91 -0.02 3.23 16 19 C 0.06 2.64 5.25 85.32 0.45 3.09 16 20 N -0.79 -38.70 10.80 21.86 0.24 -38.46 16 21 Si 0.95 37.46 29.58 68.60 2.03 39.49 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.07 1.35 6.87 -2.39 -0.02 1.34 16 31 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.14 5.35 8.06 -2.91 -0.02 5.32 16 34 H 0.14 5.65 8.06 -2.91 -0.02 5.63 16 35 H 0.12 6.09 6.12 -2.91 -0.02 6.07 16 36 H 0.29 12.98 8.29 -92.71 -0.77 12.21 16 Total: -1.00 -58.21 331.79 5.10 -53.11 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.11 Total: 23.34 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.86 Total: -38.65 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.79 Total: -68.45 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -1.03 Total: -7.04 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -58.21 5.10 -53.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245834366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.116 kcal (2) G-P(sol) polarization free energy of solvation -58.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds