Wall clock time and date at job start Tue Mar 31 2020 12:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76200 * 103.00123 * 2 1 4 4 C 1.38998 * 120.15534 * 270.04386 * 3 2 1 5 5 Cl 1.73603 * 119.98799 * 359.97438 * 4 3 2 6 6 C 1.38134 * 120.01963 * 179.97438 * 4 3 2 7 7 C 1.50698 * 119.83336 * 180.27716 * 6 4 3 8 8 C 1.38484 * 120.33384 * 359.97438 * 6 4 3 9 9 C 1.37963 * 120.30982 * 359.97438 * 8 6 4 10 10 C 1.39354 * 119.97575 * 0.02562 * 9 8 6 11 11 C 1.48194 * 120.16603 * 179.97438 * 10 9 8 12 12 C 1.39009 * 119.62572 * 359.97438 * 11 10 9 13 13 C 1.40803 * 118.76022 * 180.02562 * 12 11 10 14 14 C 1.41526 * 120.98252 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00155 * 23.18713 * 14 13 12 16 16 C 1.40043 * 119.99913 * 203.18235 * 14 13 12 17 17 N 1.30734 * 120.00259 * 17.31327 * 16 14 13 18 18 Si 1.86800 * 120.00008 * 197.30842 * 16 14 13 19 19 H 1.48499 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.47136 * 120.00124 * 18 16 14 21 21 H 1.48497 * 109.47362 * 240.00043 * 18 16 14 22 22 C 1.41169 * 118.03107 * 0.02562 * 13 12 11 23 23 C 1.37706 * 119.09861 * 359.97438 * 22 13 12 24 24 N 1.31946 * 121.16221 * 359.72657 * 23 22 13 25 25 H 1.09007 * 109.47130 * 60.00166 * 1 2 3 26 26 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47479 * 300.00232 * 1 2 3 28 28 H 1.08997 * 109.47294 * 269.72263 * 7 6 4 29 29 H 1.08994 * 109.46944 * 29.72706 * 7 6 4 30 30 H 1.09003 * 109.47309 * 149.72528 * 7 6 4 31 31 H 1.08002 * 119.84788 * 179.97438 * 8 6 4 32 32 H 1.08000 * 120.01020 * 180.02562 * 9 8 6 33 33 H 1.07999 * 120.61639 * 359.97438 * 12 11 10 34 34 H 0.96997 * 120.00704 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.45002 * 179.97438 * 22 13 12 36 36 H 1.07991 * 119.41939 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 2.3666 2.3974 -1.2019 5 17 2.1717 1.5554 -2.7075 6 6 2.6768 3.7434 -1.1986 7 6 2.8390 4.4786 -2.5041 8 6 2.8334 4.4222 -0.0017 9 6 2.6804 3.7604 1.1992 10 6 2.3674 2.4025 1.2109 11 6 2.2027 1.6874 2.4984 12 6 2.3627 2.3787 3.6938 13 6 2.2026 1.6812 4.9064 14 6 2.3554 2.3383 6.1505 15 1 2.2245 3.4084 6.2157 16 6 2.6760 1.6010 7.2971 17 7 3.1619 0.3927 7.1827 18 14 2.4097 2.3440 8.9902 19 1 1.8531 3.7133 8.8478 20 1 1.4577 1.5004 9.7568 21 1 3.7058 2.4086 9.7119 22 6 1.8864 0.3068 4.8444 23 6 1.7473 -0.2935 3.6129 24 7 1.8991 0.3941 2.4971 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.8805 4.4292 -2.8219 29 1 2.2056 4.0174 -3.2618 30 1 2.5483 5.5209 -2.3727 31 1 3.0763 5.4745 -0.0083 32 1 2.8032 4.2946 2.1297 33 1 2.6061 3.4309 3.6924 34 1 3.3836 -0.1182 7.9768 35 1 1.7553 -0.2661 5.7505 36 1 1.5050 -1.3446 3.5595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245838359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:22 Heat of formation + Delta-G solvation = 46.472254 kcal Electronic energy + Delta-G solvation = -21255.346297 eV Core-core repulsion = 18049.093039 eV Total energy + Delta-G solvation = -3206.253258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.43403 -38.03438 -36.25020 -34.30378 -33.01336 -31.06246 -30.41712 -29.58302 -28.33201 -26.35857 -25.94684 -22.99626 -22.37263 -20.97705 -20.50682 -17.84316 -16.53605 -15.95432 -15.78059 -15.29081 -14.67811 -14.27202 -14.18567 -14.06854 -13.79811 -13.48778 -13.07870 -12.93059 -12.77630 -12.51823 -12.32660 -12.30282 -12.15763 -11.53215 -11.48868 -11.35694 -11.17264 -11.14404 -10.91603 -10.62735 -10.33538 -9.97794 -9.75694 -9.47965 -8.80522 -8.48772 -8.39868 -8.08210 -7.26352 -6.92440 -5.94383 -4.64297 1.01340 1.22172 2.15197 2.46576 2.69968 2.77230 2.98942 3.03798 3.13990 3.28582 3.80707 3.93384 4.63560 4.79301 4.92589 5.15285 5.28160 5.49832 5.56366 5.57318 5.61922 5.64399 5.70646 5.74166 6.04993 6.08322 6.16518 6.24545 6.35375 6.51629 6.69155 6.82916 6.86510 7.03061 7.04759 7.27560 7.40658 7.78644 8.03250 8.38844 8.66853 8.68261 9.56260 10.01311 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.003737 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.640398 B = 7491.366674 C = 8521.774465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.075 6.075 3 C -0.102 4.102 4 C 0.002 3.998 5 Cl -0.060 7.060 6 C -0.103 4.103 7 C -0.112 4.112 8 C -0.089 4.089 9 C -0.116 4.116 10 C 0.039 3.961 11 C 0.130 3.870 12 C -0.243 4.243 13 C 0.123 3.877 14 C -0.458 4.458 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.785 5.785 18 Si 0.910 3.090 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.202 4.202 23 C 0.081 3.919 24 N -0.509 5.509 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.283 0.717 35 H 0.126 0.874 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 4.446 -12.048 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.159 5.841 3 C -0.215 4.215 4 C -0.028 4.028 5 Cl -0.031 7.031 6 C -0.106 4.106 7 C -0.169 4.169 8 C -0.108 4.108 9 C -0.136 4.136 10 C 0.035 3.965 11 C -0.005 4.005 12 C -0.267 4.267 13 C 0.115 3.885 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.141 4.141 17 N -0.410 5.410 18 Si 0.734 3.266 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.224 4.224 23 C -0.073 4.073 24 N -0.223 5.223 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.755 2.738 -12.869 13.273 hybrid contribution -0.660 1.796 1.827 2.646 sum -2.415 4.534 -11.042 12.178 Atomic orbital electron populations 1.23400 0.96695 1.05426 1.03988 1.84783 1.04507 0.99186 1.95626 1.21804 1.07558 0.99758 0.92381 1.21090 1.03060 0.92009 0.86612 1.98328 1.95686 1.78018 1.31050 1.19680 1.02579 0.91883 0.96460 1.20804 1.02599 0.99699 0.93800 1.20974 0.98997 0.99818 0.90992 1.21455 0.99707 0.93803 0.98652 1.19165 0.93409 0.92257 0.91638 1.19052 1.00529 0.91329 0.89577 1.21858 1.12612 0.99709 0.92514 1.17731 0.86816 0.91905 0.92067 1.19601 1.42066 0.95585 0.91614 0.90088 1.25948 0.91917 0.94496 1.01755 1.69765 1.28491 1.10496 1.32235 0.86227 0.78984 0.80501 0.80875 1.18285 1.19537 1.19819 1.22371 1.05395 0.96727 0.97946 1.22221 0.97926 0.98389 0.88737 1.68837 1.18860 1.05884 1.28750 0.91922 0.88695 0.90771 0.91011 0.91118 0.91365 0.85057 0.84461 0.87982 0.90576 0.85668 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 10.66 101.05 1.08 -0.89 16 2 S -0.08 -1.37 17.77 -107.50 -1.91 -3.28 16 3 C -0.10 -1.88 5.74 -38.62 -0.22 -2.11 16 4 C 0.00 0.04 6.33 -39.34 -0.25 -0.21 16 5 Cl -0.06 -0.84 26.14 -51.86 -1.36 -2.19 16 6 C -0.10 -1.42 5.88 -104.57 -0.62 -2.04 16 7 C -0.11 -1.15 9.60 36.00 0.35 -0.81 16 8 C -0.09 -1.21 9.68 -39.59 -0.38 -1.60 16 9 C -0.12 -1.90 9.41 -39.27 -0.37 -2.27 16 10 C 0.04 0.76 5.89 -104.71 -0.62 0.14 16 11 C 0.13 2.93 6.71 -83.05 -0.56 2.37 16 12 C -0.24 -5.72 9.25 -38.33 -0.35 -6.08 16 13 C 0.12 3.13 5.61 -106.56 -0.60 2.53 16 14 C -0.46 -11.53 9.12 -37.65 -0.34 -11.87 16 15 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 16 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 17 N -0.78 -19.33 10.90 55.55 0.61 -18.73 16 18 Si 0.91 17.73 29.59 -169.99 -5.03 12.69 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.20 -5.03 8.80 -38.66 -0.34 -5.37 16 23 C 0.08 1.86 11.15 -17.70 -0.20 1.67 16 24 N -0.51 -11.59 6.53 -9.96 -0.07 -11.66 16 25 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.71 6.87 -51.93 -0.36 0.36 16 30 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.14 2.13 6.18 -52.49 -0.32 1.80 16 33 H 0.10 2.19 6.18 -52.49 -0.32 1.87 16 34 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 35 H 0.13 3.18 6.16 -52.49 -0.32 2.86 16 36 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -27.09 329.63 -10.13 -37.23 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.83 Total: 5.73 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -3.51 Total: -24.75 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.54 Total: -30.39 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -1.91 Total: -3.28 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.36 Total: -2.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.09 -10.13 -37.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245838359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.697 kcal (2) G-P(sol) polarization free energy of solvation -27.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds