Wall clock time and date at job start Tue Mar 31 2020 12:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76200 * 103.00123 * 2 1 4 4 C 1.38998 * 120.15534 * 270.04386 * 3 2 1 5 5 Cl 1.73603 * 119.98799 * 359.97438 * 4 3 2 6 6 C 1.38134 * 120.01963 * 179.97438 * 4 3 2 7 7 C 1.50698 * 119.83336 * 180.27716 * 6 4 3 8 8 C 1.38484 * 120.33384 * 359.97438 * 6 4 3 9 9 C 1.37963 * 120.30982 * 359.97438 * 8 6 4 10 10 C 1.39354 * 119.97575 * 0.02562 * 9 8 6 11 11 C 1.48194 * 120.16603 * 179.97438 * 10 9 8 12 12 C 1.39009 * 119.62572 * 359.97438 * 11 10 9 13 13 C 1.40803 * 118.76022 * 180.02562 * 12 11 10 14 14 C 1.41526 * 120.98252 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00155 * 23.18713 * 14 13 12 16 16 C 1.40043 * 119.99913 * 203.18235 * 14 13 12 17 17 N 1.30734 * 120.00259 * 17.31327 * 16 14 13 18 18 Si 1.86800 * 120.00008 * 197.30842 * 16 14 13 19 19 H 1.48499 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.47136 * 120.00124 * 18 16 14 21 21 H 1.48497 * 109.47362 * 240.00043 * 18 16 14 22 22 C 1.41169 * 118.03107 * 0.02562 * 13 12 11 23 23 C 1.37706 * 119.09861 * 359.97438 * 22 13 12 24 24 N 1.31946 * 121.16221 * 359.72657 * 23 22 13 25 25 H 1.09007 * 109.47130 * 60.00166 * 1 2 3 26 26 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47479 * 300.00232 * 1 2 3 28 28 H 1.08997 * 109.47294 * 269.72263 * 7 6 4 29 29 H 1.08994 * 109.46944 * 29.72706 * 7 6 4 30 30 H 1.09003 * 109.47309 * 149.72528 * 7 6 4 31 31 H 1.08002 * 119.84788 * 179.97438 * 8 6 4 32 32 H 1.08000 * 120.01020 * 180.02562 * 9 8 6 33 33 H 1.07999 * 120.61639 * 359.97438 * 12 11 10 34 34 H 0.96997 * 120.00704 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.45002 * 179.97438 * 22 13 12 36 36 H 1.07991 * 119.41939 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 2.3666 2.3974 -1.2019 5 17 2.1717 1.5554 -2.7075 6 6 2.6768 3.7434 -1.1986 7 6 2.8390 4.4786 -2.5041 8 6 2.8334 4.4222 -0.0017 9 6 2.6804 3.7604 1.1992 10 6 2.3674 2.4025 1.2109 11 6 2.2027 1.6874 2.4984 12 6 2.3627 2.3787 3.6938 13 6 2.2026 1.6812 4.9064 14 6 2.3554 2.3383 6.1505 15 1 2.2245 3.4084 6.2157 16 6 2.6760 1.6010 7.2971 17 7 3.1619 0.3927 7.1827 18 14 2.4097 2.3440 8.9902 19 1 1.8531 3.7133 8.8478 20 1 1.4577 1.5004 9.7568 21 1 3.7058 2.4086 9.7119 22 6 1.8864 0.3068 4.8444 23 6 1.7473 -0.2935 3.6129 24 7 1.8991 0.3941 2.4971 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.8805 4.4292 -2.8219 29 1 2.2056 4.0174 -3.2618 30 1 2.5483 5.5209 -2.3727 31 1 3.0763 5.4745 -0.0083 32 1 2.8032 4.2946 2.1297 33 1 2.6061 3.4309 3.6924 34 1 3.3836 -0.1182 7.9768 35 1 1.7553 -0.2661 5.7505 36 1 1.5050 -1.3446 3.5595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245838359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:21 Heat of formation + Delta-G solvation = 35.406299 kcal Electronic energy + Delta-G solvation = -21255.826153 eV Core-core repulsion = 18049.093039 eV Total energy + Delta-G solvation = -3206.733114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82818 -39.62108 -37.42366 -36.06041 -34.32795 -32.73890 -31.82705 -31.06301 -29.59977 -27.93320 -27.45968 -24.38857 -23.81356 -22.63384 -22.00118 -19.52098 -17.99240 -17.44502 -17.12589 -16.88863 -16.21971 -15.74173 -15.64776 -15.41455 -15.27600 -14.77385 -14.51352 -14.27094 -14.16285 -14.05929 -13.73405 -13.42568 -13.17493 -13.11967 -12.95115 -12.78846 -12.58801 -12.42935 -12.37835 -11.96383 -11.81453 -11.69157 -11.24759 -11.09863 -10.23803 -10.12274 -9.94517 -9.71802 -8.89359 -8.69866 -7.45701 -6.54479 -0.33031 -0.02976 0.87719 0.95417 1.14354 1.22428 1.38502 1.53119 1.56688 1.91602 2.17608 2.55520 2.86394 3.47212 3.79741 3.80205 3.99831 4.14877 4.26374 4.35644 4.38633 4.43798 4.57009 4.68171 4.81151 4.83671 4.88623 4.96597 4.99646 5.04148 5.20757 5.23000 5.33455 5.42838 5.46059 5.58319 5.73743 5.91892 6.20061 6.52649 6.80773 6.81499 7.75748 8.24858 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.003737 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.640398 B = 7491.366674 C = 8521.774465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.117 6.117 3 C -0.111 4.111 4 C -0.011 4.011 5 Cl -0.044 7.044 6 C -0.088 4.088 7 C -0.112 4.112 8 C -0.079 4.079 9 C -0.117 4.117 10 C -0.004 4.004 11 C 0.131 3.869 12 C -0.263 4.263 13 C 0.097 3.903 14 C -0.490 4.490 15 H 0.082 0.918 16 C 0.039 3.961 17 N -0.816 5.816 18 Si 0.985 3.015 19 H -0.256 1.256 20 H -0.264 1.264 21 H -0.265 1.265 22 C -0.228 4.228 23 C 0.079 3.921 24 N -0.509 5.509 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.174 0.826 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.292 0.708 35 H 0.112 0.888 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 6.441 -13.546 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S 0.117 5.883 3 C -0.224 4.224 4 C -0.042 4.042 5 Cl -0.015 7.015 6 C -0.091 4.091 7 C -0.169 4.169 8 C -0.097 4.097 9 C -0.138 4.138 10 C -0.008 4.008 11 C -0.004 4.004 12 C -0.286 4.286 13 C 0.089 3.911 14 C -0.520 4.520 15 H 0.100 0.900 16 C -0.178 4.178 17 N -0.441 5.441 18 Si 0.805 3.195 19 H -0.179 1.179 20 H -0.188 1.188 21 H -0.190 1.190 22 C -0.250 4.250 23 C -0.075 4.075 24 N -0.223 5.223 25 H 0.097 0.903 26 H 0.132 0.868 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.192 0.808 32 H 0.159 0.841 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.744 4.730 -14.391 15.249 hybrid contribution -0.645 1.208 2.057 2.471 sum -2.389 5.939 -12.334 13.896 Atomic orbital electron populations 1.23364 0.94313 1.06612 1.03676 1.84795 1.07183 1.00666 1.95673 1.21865 1.08110 0.99290 0.93109 1.21230 1.03427 0.92987 0.86510 1.98329 1.95602 1.77961 1.29625 1.20211 0.99497 0.91093 0.98309 1.20929 1.03644 1.00716 0.91564 1.21410 0.97109 1.01584 0.89566 1.21618 0.99233 0.92688 1.00253 1.19151 0.97278 0.93719 0.90604 1.19572 0.98546 0.91267 0.91006 1.22032 1.13663 1.00472 0.92463 1.18107 0.87247 0.92554 0.93165 1.19875 1.43617 0.95945 0.92605 0.89984 1.26815 0.90885 0.94743 1.05314 1.69818 1.28791 1.11739 1.33780 0.85111 0.79106 0.79615 0.75625 1.17941 1.18830 1.18981 1.22319 1.07665 0.96890 0.98117 1.22562 0.97131 0.99391 0.88439 1.69007 1.18969 1.06207 1.28112 0.90309 0.86816 0.92777 0.89537 0.90880 0.88660 0.80824 0.84148 0.86762 0.89751 0.86973 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.41 10.66 113.37 1.21 -2.21 16 2 S -0.12 -4.29 17.77 -56.49 -1.00 -5.30 16 3 C -0.11 -4.04 5.74 22.89 0.13 -3.91 16 4 C -0.01 -0.34 6.33 22.43 0.14 -0.20 16 5 Cl -0.04 -1.15 26.14 -2.72 -0.07 -1.22 16 6 C -0.09 -2.14 5.88 -19.83 -0.12 -2.25 16 7 C -0.11 -1.79 9.60 71.24 0.68 -1.10 16 8 C -0.08 -1.87 9.68 22.26 0.22 -1.66 16 9 C -0.12 -3.72 9.41 22.47 0.21 -3.51 16 10 C 0.00 -0.16 5.89 -19.92 -0.12 -0.28 16 11 C 0.13 6.08 6.71 41.82 0.28 6.36 16 12 C -0.26 -12.86 9.25 23.08 0.21 -12.64 16 13 C 0.10 5.17 5.61 -21.12 -0.12 5.05 16 14 C -0.49 -25.56 9.12 23.52 0.21 -25.35 16 15 H 0.08 4.09 7.90 -2.91 -0.02 4.07 16 16 C 0.04 1.91 5.20 85.29 0.44 2.36 16 17 N -0.82 -41.38 10.90 21.84 0.24 -41.14 16 18 Si 0.99 36.57 29.59 68.60 2.03 38.60 16 19 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 20 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 21 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 22 C -0.23 -11.89 8.80 22.86 0.20 -11.69 16 23 C 0.08 3.76 11.15 84.55 0.94 4.70 16 24 N -0.51 -23.88 6.53 -185.43 -1.21 -25.10 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.17 6.87 -2.39 -0.02 1.16 16 30 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 31 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.14 4.25 6.18 -2.91 -0.02 4.23 16 33 H 0.11 5.08 6.18 -2.91 -0.02 5.06 16 34 H 0.29 13.26 8.29 -92.71 -0.77 12.49 16 35 H 0.11 6.03 6.16 -2.91 -0.02 6.01 16 36 H 0.14 5.99 8.06 -2.92 -0.02 5.96 16 Total: -1.00 -61.35 329.63 5.63 -55.72 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 1.11 Total: 24.74 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 4.54 Total: -46.30 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.97 Total: -66.23 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -1.00 Total: -5.30 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -61.35 5.63 -55.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245838359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.123 kcal (2) G-P(sol) polarization free energy of solvation -61.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds