Wall clock time and date at job start Tue Mar 31 2020 12:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48505 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47165 * 299.99672 * 3 2 1 6 6 H 1.48495 * 109.47125 * 60.00273 * 3 2 1 7 7 C 1.38702 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99701 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.35518 * 117.00535 * 174.97643 * 9 7 2 11 11 C 1.38835 * 120.16013 * 5.24169 * 10 9 7 12 12 C 1.38020 * 120.07762 * 180.02562 * 11 10 9 13 13 C 1.38582 * 120.40485 * 0.02562 * 12 11 10 14 14 C 1.37823 * 120.32363 * 0.02562 * 13 12 11 15 15 C 1.39690 * 119.91770 * 359.97438 * 14 13 12 16 16 C 1.47498 * 120.19613 * 180.02562 * 15 14 13 17 17 O 1.21593 * 119.99426 * 180.02562 * 16 15 14 18 18 N 1.34772 * 120.00362 * 359.97438 * 16 15 14 19 19 C 1.39494 * 120.00140 * 174.35480 * 18 16 15 20 20 C 1.39434 * 121.08705 * 154.10922 * 19 18 16 21 21 N 1.31757 * 119.74980 * 179.71930 * 20 19 18 22 22 N 1.28301 * 122.28072 * 0.57458 * 21 20 19 23 23 C 1.32129 * 122.36867 * 359.70916 * 22 21 20 24 24 Cl 1.73600 * 120.04891 * 180.02562 * 23 22 21 25 25 C 1.38507 * 119.90061 * 359.97438 * 23 22 21 26 26 H 0.96998 * 119.99721 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.95910 * 0.29858 * 11 10 9 28 28 H 1.07996 * 119.80634 * 179.97438 * 12 11 10 29 29 H 1.07998 * 119.83904 * 179.97438 * 13 12 11 30 30 H 1.08002 * 120.04557 * 179.97438 * 14 13 12 31 31 H 0.96998 * 119.99574 * 354.36100 * 18 16 15 32 32 H 1.08003 * 120.12416 * 359.97438 * 20 19 18 33 33 H 1.07998 * 121.06316 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0086 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5030 -0.1047 11 6 3.4555 -3.4396 -0.0968 12 6 4.2013 -4.5959 -0.2046 13 6 3.5747 -5.8264 -0.3217 14 6 2.1990 -5.9085 -0.3324 15 6 1.4309 -4.7468 -0.2241 16 6 -0.0419 -4.8275 -0.2343 17 8 -0.7069 -3.8139 -0.1403 18 7 -0.6504 -6.0246 -0.3487 19 6 -2.0382 -6.1148 -0.2403 20 6 -2.7424 -7.1510 -0.8523 21 7 -4.0526 -7.2137 -0.7281 22 7 -4.7206 -6.3414 -0.0655 23 6 -4.1428 -5.3214 0.5440 24 17 -5.1055 -4.1764 1.4248 25 6 -2.7678 -5.1677 0.4799 26 1 -0.4849 0.8400 -0.0004 27 1 3.9512 -2.4848 -0.0019 28 1 5.2799 -4.5415 -0.1985 29 1 4.1673 -6.7254 -0.4059 30 1 1.7153 -6.8698 -0.4243 31 1 -0.1233 -6.8234 -0.5064 32 1 -2.2154 -7.9016 -1.4226 33 1 -2.2760 -4.3408 0.9707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361841422.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:30 Heat of formation + Delta-G solvation = 7.526914 kcal Electronic energy + Delta-G solvation = -23272.122552 eV Core-core repulsion = 19517.887283 eV Total energy + Delta-G solvation = -3754.235269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.051 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.56931 -41.33939 -40.08807 -38.10694 -38.04305 -36.67588 -34.35724 -33.62453 -33.13566 -31.48253 -30.60633 -27.46719 -26.36548 -25.74412 -24.32996 -23.09338 -21.87898 -20.18223 -19.86181 -18.96482 -18.59900 -18.00191 -17.57852 -16.71868 -16.58998 -16.30593 -16.05470 -16.01789 -15.84550 -15.35407 -15.24749 -14.71417 -14.44350 -14.31515 -13.57538 -13.45754 -13.09151 -12.81129 -12.72880 -12.67387 -12.56373 -12.40739 -12.25990 -12.11484 -11.62945 -11.26981 -10.92211 -10.86602 -10.62774 -10.05579 -9.82290 -9.07875 -8.48188 -6.18166 -0.60618 -0.43611 0.07651 0.44088 0.70866 1.32746 1.42067 1.51311 1.61987 1.80074 2.13154 2.30673 2.83859 2.98656 3.16292 3.20198 3.39606 3.53317 3.55963 3.88873 4.04170 4.11589 4.26785 4.49188 4.55966 4.66026 4.70029 4.91547 5.05149 5.10141 5.18583 5.43119 5.56884 5.69083 5.91362 6.12801 6.24614 6.91986 7.04976 7.34986 7.73674 8.71431 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.004500 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.345291 B = 6220.822832 C = 8465.010109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.018 4.018 3 Si 1.017 2.983 4 H -0.245 1.245 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.424 4.424 8 H 0.108 0.892 9 O -0.185 6.185 10 C 0.154 3.846 11 C -0.258 4.258 12 C -0.035 4.035 13 C -0.199 4.199 14 C -0.024 4.024 15 C -0.247 4.247 16 C 0.552 3.448 17 O -0.528 6.528 18 N -0.640 5.640 19 C 0.186 3.814 20 C 0.037 3.963 21 N -0.218 5.218 22 N -0.276 5.276 23 C 0.135 3.865 24 Cl -0.004 7.004 25 C -0.153 4.153 26 H 0.271 0.729 27 H 0.123 0.877 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.439 0.561 32 H 0.236 0.764 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 -15.822 -0.684 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.218 4.218 3 Si 0.836 3.164 4 H -0.168 1.168 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.500 4.500 8 H 0.126 0.874 9 O -0.087 6.087 10 C 0.099 3.901 11 C -0.277 4.277 12 C -0.053 4.053 13 C -0.217 4.217 14 C -0.042 4.042 15 C -0.252 4.252 16 C 0.344 3.656 17 O -0.403 6.403 18 N -0.289 5.289 19 C 0.075 3.925 20 C -0.132 4.132 21 N -0.058 5.058 22 N -0.123 5.123 23 C -0.035 4.035 24 Cl 0.024 6.976 25 C -0.185 4.185 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.170 0.830 29 H 0.184 0.816 30 H 0.187 0.813 31 H 0.282 0.718 32 H 0.252 0.748 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.300 -15.556 -0.853 15.748 hybrid contribution 1.432 2.037 0.544 2.549 sum 3.731 -13.518 -0.309 14.027 Atomic orbital electron populations 1.70287 1.08214 1.28571 1.46494 1.26664 0.96683 1.02942 0.95521 0.84555 0.78583 0.74811 0.78407 1.16778 1.19627 1.19552 1.22036 0.92709 0.81599 1.53646 0.87446 1.84136 1.35261 1.12216 1.77130 1.20040 0.91659 0.87427 0.91014 1.21304 0.92335 1.01033 1.13002 1.21490 1.00826 0.91379 0.91600 1.21209 0.94088 0.98396 1.08042 1.21377 0.94461 0.95626 0.92782 1.18949 0.90684 0.93153 1.22369 1.18783 0.88914 0.82368 0.75487 1.90973 1.66421 1.35929 1.47014 1.43202 1.03299 1.11409 1.70997 1.18917 0.85774 0.95143 0.92643 1.24928 0.91569 0.98844 0.97863 1.72925 1.07028 1.16313 1.09504 1.72749 1.31861 1.00275 1.07392 1.23295 0.90020 0.93535 0.96613 1.98417 1.71601 1.55492 1.72128 1.22341 0.93054 1.02629 1.00519 0.92023 0.85972 0.82977 0.81617 0.81271 0.71813 0.74828 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.23 13.67 21.62 0.30 -55.94 16 2 C -0.02 -1.02 5.49 84.85 0.47 -0.56 16 3 Si 1.02 42.35 29.55 68.60 2.03 44.37 16 4 H -0.24 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.42 -24.08 9.49 67.93 0.64 -23.44 16 8 H 0.11 5.46 5.20 -2.91 -0.02 5.45 16 9 O -0.19 -10.86 7.84 0.97 0.01 -10.85 16 10 C 0.15 7.11 6.66 22.91 0.15 7.27 16 11 C -0.26 -9.84 9.16 22.36 0.20 -9.63 16 12 C -0.03 -0.92 10.03 22.30 0.22 -0.70 16 13 C -0.20 -4.22 10.03 22.25 0.22 -4.00 16 14 C -0.02 -0.56 9.53 22.52 0.21 -0.35 16 15 C -0.25 -9.05 5.89 -19.99 -0.12 -9.17 16 16 C 0.55 21.06 7.58 86.69 0.66 21.72 16 17 O -0.53 -27.08 12.47 16.89 0.21 -26.87 16 18 N -0.64 -15.90 5.31 -305.74 -1.62 -17.52 16 19 C 0.19 5.04 6.47 38.53 0.25 5.29 16 20 C 0.04 0.77 11.26 84.99 0.96 1.73 16 21 N -0.22 -5.97 11.49 -56.82 -0.65 -6.62 16 22 N -0.28 -8.89 11.48 -49.98 -0.57 -9.46 16 23 C 0.14 4.50 7.36 84.71 0.62 5.12 16 24 Cl 0.00 -0.14 29.13 -2.72 -0.08 -0.22 16 25 C -0.15 -5.29 8.65 22.65 0.20 -5.09 16 26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.12 4.83 5.64 -2.91 -0.02 4.82 16 28 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.17 1.98 6.42 -2.91 -0.02 1.96 16 31 H 0.44 5.88 6.85 -92.71 -0.64 5.25 16 32 H 0.24 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.15 6.23 6.04 -2.91 -0.02 6.21 16 Total: -1.00 -83.29 312.50 4.88 -78.40 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.58 Total: 16.51 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 4.70 Total: -11.80 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -2.55 Total: -89.54 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: 0.22 Total: -37.72 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -83.29 4.88 -78.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361841422.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.930 kcal (2) G-P(sol) polarization free energy of solvation -83.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds