Wall clock time and date at job start Tue Mar 31 2020 12:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21589 * 119.99433 * 184.81436 * 3 2 1 5 5 C 1.47837 * 120.00137 * 4.81946 * 3 2 1 6 6 C 1.39679 * 120.10010 * 23.08461 * 5 3 2 7 7 C 1.38046 * 120.03635 * 179.76647 * 6 5 3 8 8 C 1.38184 * 120.23940 * 0.50785 * 7 6 5 9 9 C 1.39174 * 120.20737 * 359.74455 * 8 7 6 10 10 S 1.76197 * 120.02046 * 179.97438 * 9 8 7 11 11 C 1.76199 * 100.00024 * 274.98250 * 10 9 8 12 12 H 1.07998 * 120.00207 * 5.00780 * 11 10 9 13 13 C 1.38731 * 119.99966 * 185.00406 * 11 10 9 14 14 N 1.31622 * 120.00086 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99985 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47194 * 59.99478 * 15 13 11 17 17 H 1.48492 * 109.47212 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46783 * 299.99601 * 15 13 11 19 19 C 1.38875 * 119.95935 * 359.97438 * 9 8 7 20 20 C 1.40651 * 119.99719 * 179.97438 * 2 1 3 21 21 C 1.38810 * 122.63070 * 354.29741 * 20 2 1 22 22 C 1.33364 * 114.89214 * 180.28876 * 21 20 2 23 23 S 1.75849 * 109.71622 * 359.73234 * 22 21 20 24 24 C 1.33837 * 122.62385 * 174.06690 * 20 2 1 25 25 H 1.09005 * 109.47416 * 263.62748 * 1 2 3 26 26 H 1.09001 * 109.46994 * 23.62487 * 1 2 3 27 27 H 1.08998 * 109.47352 * 143.62385 * 1 2 3 28 28 H 1.07999 * 119.98608 * 359.97438 * 6 5 3 29 29 H 1.08000 * 119.87680 * 180.25799 * 7 6 5 30 30 H 1.08000 * 119.89127 * 179.76595 * 8 7 6 31 31 H 0.97001 * 120.00208 * 180.02562 * 14 13 11 32 32 H 1.08002 * 120.12212 * 180.02562 * 19 9 8 33 33 H 1.08003 * 122.55507 * 0.02562 * 21 20 2 34 34 H 1.08003 * 125.13820 * 179.76902 * 22 21 20 35 35 H 1.08002 * 125.20365 * 0.02562 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3515 1.1690 -0.0884 5 6 1.4036 2.4453 0.1076 6 6 0.1286 2.4741 0.6774 7 6 -0.5548 3.6690 0.7815 8 6 0.0133 4.8387 0.3141 9 6 1.2809 4.8207 -0.2602 10 16 2.0004 6.3150 -0.8553 11 6 1.2950 6.3729 -2.4689 12 1 0.5632 5.6359 -2.7651 13 6 1.6795 7.3652 -3.3588 14 7 2.5709 8.2638 -2.9977 15 14 0.9310 7.4270 -5.0693 16 1 -0.5405 7.5936 -4.9600 17 1 1.5051 8.5726 -5.8197 18 1 1.2342 6.1634 -5.7881 19 6 1.9784 3.6243 -0.3640 20 6 2.1682 -1.2181 0.0005 21 6 1.5350 -2.4479 0.1173 22 6 2.3509 -3.5027 0.1059 23 16 4.0157 -2.9631 -0.0667 24 6 3.4999 -1.2825 -0.1159 25 1 -0.3634 -0.1141 1.0213 26 1 -0.3633 0.9416 -0.4118 27 1 -0.3634 -0.8274 -0.6095 28 1 -0.3215 1.5617 1.0397 29 1 -1.5388 3.6890 1.2264 30 1 -0.5279 5.7698 0.3950 31 1 2.8394 8.9579 -3.6198 32 1 2.9624 3.6074 -0.8088 33 1 0.4635 -2.5430 0.2143 34 1 2.0366 -4.5326 0.1896 35 1 4.1577 -0.4322 -0.2193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585287818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:35 Heat of formation + Delta-G solvation = 60.464904 kcal Electronic energy + Delta-G solvation = -20811.869118 eV Core-core repulsion = 17608.266333 eV Total energy + Delta-G solvation = -3203.602785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.044 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98047 -38.54874 -37.34813 -35.14292 -32.54329 -31.23421 -30.71233 -29.37312 -27.04940 -25.62008 -24.88818 -23.20670 -22.28304 -20.49318 -19.13457 -18.20774 -17.85866 -16.84157 -16.69792 -16.03064 -15.71205 -15.08254 -14.88648 -14.48176 -14.25818 -13.73843 -13.52600 -13.42858 -13.14667 -13.11069 -13.04455 -12.55339 -12.40580 -12.32789 -11.31931 -11.22497 -11.16074 -11.10525 -11.04136 -10.71529 -10.20664 -9.99180 -9.60869 -9.22230 -9.03632 -8.88356 -8.70582 -8.05811 -7.90498 -6.75222 -6.31794 -4.06551 0.85971 1.09521 1.52235 1.57955 1.82107 2.38469 2.81454 3.04696 3.16656 3.19867 3.23832 3.41231 3.97847 4.19474 4.37319 4.67876 4.77123 5.00827 5.03616 5.04999 5.11628 5.19335 5.37272 5.43291 5.48383 5.62647 5.67361 5.77131 5.84158 5.89511 6.04467 6.18122 6.48958 6.56343 6.64072 6.85459 7.09465 7.17056 7.53169 8.00868 8.28259 9.13572 10.74895 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003028 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.035423 B = 9245.366612 C = 9751.808866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.541 5.541 3 C 0.565 3.435 4 O -0.513 6.513 5 C -0.153 4.153 6 C -0.110 4.110 7 C -0.142 4.142 8 C -0.053 4.053 9 C -0.106 4.106 10 S -0.033 6.033 11 C -0.522 4.522 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.870 5.870 15 Si 0.921 3.079 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.017 4.017 20 C 0.122 3.878 21 C -0.149 4.149 22 C -0.203 4.203 23 S 0.098 5.902 24 C -0.240 4.240 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.140 0.860 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.271 0.729 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 -20.525 7.533 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.265 5.265 3 C 0.357 3.643 4 O -0.391 6.391 5 C -0.158 4.158 6 C -0.129 4.129 7 C -0.161 4.161 8 C -0.074 4.074 9 C -0.216 4.216 10 S 0.201 5.799 11 C -0.670 4.670 12 H 0.093 0.907 13 C -0.135 4.135 14 N -0.505 5.505 15 Si 0.747 3.253 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.039 4.039 20 C 0.019 3.981 21 C -0.182 4.182 22 C -0.339 4.339 23 S 0.359 5.641 24 C -0.378 4.378 25 H 0.088 0.912 26 H 0.123 0.877 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.184 0.816 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.252 -20.226 7.835 21.933 hybrid contribution -2.844 -0.205 -1.528 3.235 sum -6.096 -20.431 6.307 22.234 Atomic orbital electron populations 1.22703 0.78356 1.05237 1.02307 1.45179 1.07255 1.03473 1.70594 1.18628 0.86928 0.83156 0.75624 1.90554 1.13877 1.86086 1.48538 1.19627 0.96193 0.92588 1.07435 1.21984 0.93433 0.99099 0.98362 1.21117 1.00359 0.92482 1.02171 1.22038 0.94095 0.98260 0.92981 1.22847 0.97069 1.00764 1.00951 1.83666 1.62096 1.17559 1.16553 1.22786 1.28678 1.17746 0.97765 0.90680 1.25001 0.94793 0.94700 0.99030 1.69973 1.29444 1.14689 1.36354 0.86179 0.79308 0.77973 0.81868 1.19799 1.20700 1.19817 1.21894 0.99263 0.89684 0.93022 1.16870 0.90893 0.85694 1.04687 1.19806 1.01270 0.90236 1.06842 1.25377 0.96343 1.02644 1.09545 1.84298 1.07422 0.99884 1.72528 1.26553 0.98652 1.00309 1.12294 0.91206 0.87716 0.90730 0.84231 0.85689 0.85002 0.91943 0.84420 0.83910 0.81577 0.78065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 8.02 59.84 0.48 0.97 16 2 N -0.54 -7.07 3.12 -123.09 -0.38 -7.45 16 3 C 0.56 9.23 7.47 -12.33 -0.09 9.14 16 4 O -0.51 -9.74 13.35 5.29 0.07 -9.67 16 5 C -0.15 -2.52 5.54 -105.00 -0.58 -3.10 16 6 C -0.11 -1.45 7.54 -39.11 -0.29 -1.75 16 7 C -0.14 -1.93 10.02 -39.67 -0.40 -2.33 16 8 C -0.05 -0.92 9.79 -39.25 -0.38 -1.30 16 9 C -0.11 -2.21 5.45 -39.00 -0.21 -2.42 16 10 S -0.03 -0.85 21.41 -107.50 -2.30 -3.15 16 11 C -0.52 -14.47 9.46 30.91 0.29 -14.18 16 12 H 0.08 2.04 7.79 -52.49 -0.41 1.63 16 13 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 14 N -0.87 -25.20 13.22 55.49 0.73 -24.46 16 15 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 19 C -0.02 -0.33 9.34 -38.92 -0.36 -0.70 16 20 C 0.12 1.58 6.41 -85.14 -0.55 1.03 16 21 C -0.15 -1.46 9.28 -41.07 -0.38 -1.84 16 22 C -0.20 -1.81 11.22 29.03 0.33 -1.48 16 23 S 0.10 1.03 23.33 -107.50 -2.51 -1.48 16 24 C -0.24 -3.32 10.04 29.19 0.29 -3.03 16 25 H 0.07 0.46 7.22 -51.93 -0.37 0.08 16 26 H 0.10 0.97 4.94 -51.93 -0.26 0.71 16 27 H 0.07 0.51 7.08 -51.93 -0.37 0.15 16 28 H 0.14 1.32 4.27 -52.49 -0.22 1.10 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.14 2.89 7.82 -52.49 -0.41 2.48 16 33 H 0.14 1.03 6.99 -52.48 -0.37 0.66 16 34 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.20 3.24 5.28 -52.54 -0.28 2.96 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -32.12 324.25 -9.57 -41.70 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.09 Total: 2.60 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -1.96 Total: -19.03 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.35 Total: -31.91 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -4.81 Total: -4.63 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.12 -9.57 -41.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585287818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.161 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds