Wall clock time and date at job start Tue Mar 31 2020 12:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99873 * 2 1 4 4 O 1.21589 * 119.99433 * 184.81436 * 3 2 1 5 5 C 1.47837 * 120.00137 * 4.81946 * 3 2 1 6 6 C 1.39679 * 120.10010 * 23.08461 * 5 3 2 7 7 C 1.38046 * 120.03635 * 179.76647 * 6 5 3 8 8 C 1.38184 * 120.23940 * 0.50785 * 7 6 5 9 9 C 1.39174 * 120.20737 * 359.74455 * 8 7 6 10 10 S 1.76197 * 120.02046 * 179.97438 * 9 8 7 11 11 C 1.76199 * 100.00024 * 274.98250 * 10 9 8 12 12 H 1.07998 * 120.00207 * 5.00780 * 11 10 9 13 13 C 1.38731 * 119.99966 * 185.00406 * 11 10 9 14 14 N 1.31622 * 120.00086 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99985 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47194 * 59.99478 * 15 13 11 17 17 H 1.48492 * 109.47212 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46783 * 299.99601 * 15 13 11 19 19 C 1.38875 * 119.95935 * 359.97438 * 9 8 7 20 20 C 1.40651 * 119.99719 * 179.97438 * 2 1 3 21 21 C 1.38810 * 122.63070 * 354.29741 * 20 2 1 22 22 C 1.33364 * 114.89214 * 180.28876 * 21 20 2 23 23 S 1.75849 * 109.71622 * 359.73234 * 22 21 20 24 24 C 1.33837 * 122.62385 * 174.06690 * 20 2 1 25 25 H 1.09005 * 109.47416 * 263.62748 * 1 2 3 26 26 H 1.09001 * 109.46994 * 23.62487 * 1 2 3 27 27 H 1.08998 * 109.47352 * 143.62385 * 1 2 3 28 28 H 1.07999 * 119.98608 * 359.97438 * 6 5 3 29 29 H 1.08000 * 119.87680 * 180.25799 * 7 6 5 30 30 H 1.08000 * 119.89127 * 179.76595 * 8 7 6 31 31 H 0.97001 * 120.00208 * 180.02562 * 14 13 11 32 32 H 1.08002 * 120.12212 * 180.02562 * 19 9 8 33 33 H 1.08003 * 122.55507 * 0.02562 * 21 20 2 34 34 H 1.08003 * 125.13820 * 179.76902 * 22 21 20 35 35 H 1.08002 * 125.20365 * 0.02562 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3515 1.1690 -0.0884 5 6 1.4036 2.4453 0.1076 6 6 0.1286 2.4741 0.6774 7 6 -0.5548 3.6690 0.7815 8 6 0.0133 4.8387 0.3141 9 6 1.2809 4.8207 -0.2602 10 16 2.0004 6.3150 -0.8553 11 6 1.2950 6.3729 -2.4689 12 1 0.5632 5.6359 -2.7651 13 6 1.6795 7.3652 -3.3588 14 7 2.5709 8.2638 -2.9977 15 14 0.9310 7.4270 -5.0693 16 1 -0.5405 7.5936 -4.9600 17 1 1.5051 8.5726 -5.8197 18 1 1.2342 6.1634 -5.7881 19 6 1.9784 3.6243 -0.3640 20 6 2.1682 -1.2181 0.0005 21 6 1.5350 -2.4479 0.1173 22 6 2.3509 -3.5027 0.1059 23 16 4.0157 -2.9631 -0.0667 24 6 3.4999 -1.2825 -0.1159 25 1 -0.3634 -0.1141 1.0213 26 1 -0.3633 0.9416 -0.4118 27 1 -0.3634 -0.8274 -0.6095 28 1 -0.3215 1.5617 1.0397 29 1 -1.5388 3.6890 1.2264 30 1 -0.5279 5.7698 0.3950 31 1 2.8394 8.9579 -3.6198 32 1 2.9624 3.6074 -0.8088 33 1 0.4635 -2.5430 0.2143 34 1 2.0366 -4.5326 0.1896 35 1 4.1577 -0.4322 -0.2193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585287818.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:34 Heat of formation + Delta-G solvation = 41.273225 kcal Electronic energy + Delta-G solvation = -20812.701332 eV Core-core repulsion = 17608.266333 eV Total energy + Delta-G solvation = -3204.434999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.044 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.09225 -39.73307 -38.47385 -36.13484 -34.66128 -32.42627 -32.03133 -30.29531 -27.95741 -27.75379 -25.90949 -24.33723 -23.55767 -21.61317 -20.21348 -19.76236 -19.03957 -18.13550 -17.81310 -17.08317 -16.93783 -16.83803 -16.30665 -15.81451 -15.45409 -14.99597 -14.73869 -14.53293 -14.42771 -14.09154 -13.96695 -13.77785 -13.66344 -13.21730 -13.13662 -12.96177 -12.84295 -12.51201 -12.22540 -11.86772 -11.67439 -11.23833 -11.10237 -10.85581 -10.74467 -10.03687 -9.70056 -9.66484 -8.83188 -8.82082 -8.39719 -6.20793 -0.28672 0.10145 0.21552 0.66835 1.02648 1.28490 1.34464 1.38828 1.45269 1.62095 1.86231 2.00554 2.23638 2.70484 2.93423 3.27855 3.40749 3.88044 3.90905 4.00967 4.16737 4.29151 4.34497 4.42191 4.49805 4.61276 4.71369 4.76210 4.84056 4.88911 5.03322 5.10334 5.23736 5.29107 5.37070 5.47727 5.67173 5.83431 6.13930 6.14749 6.84470 7.00177 8.67269 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003028 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.035423 B = 9245.366612 C = 9751.808866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.534 5.534 3 C 0.554 3.446 4 O -0.557 6.557 5 C -0.154 4.154 6 C -0.082 4.082 7 C -0.119 4.119 8 C -0.061 4.061 9 C -0.127 4.127 10 S -0.100 6.100 11 C -0.536 4.536 12 H 0.071 0.929 13 C 0.019 3.981 14 N -0.908 5.908 15 Si 0.993 3.007 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.269 1.269 19 C -0.043 4.043 20 C 0.116 3.884 21 C -0.154 4.154 22 C -0.182 4.182 23 S 0.105 5.895 24 C -0.286 4.286 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.193 0.807 29 H 0.180 0.820 30 H 0.134 0.866 31 H 0.274 0.726 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.205 0.795 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 -24.247 8.212 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.257 5.257 3 C 0.346 3.654 4 O -0.437 6.437 5 C -0.159 4.159 6 C -0.099 4.099 7 C -0.138 4.138 8 C -0.082 4.082 9 C -0.238 4.238 10 S 0.135 5.865 11 C -0.683 4.683 12 H 0.089 0.911 13 C -0.187 4.187 14 N -0.544 5.544 15 Si 0.815 3.185 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.195 1.195 19 C -0.065 4.065 20 C 0.011 3.989 21 C -0.185 4.185 22 C -0.318 4.318 23 S 0.366 5.634 24 C -0.425 4.425 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.209 0.791 29 H 0.197 0.803 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.198 0.802 34 H 0.222 0.778 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.578 -23.979 8.529 26.555 hybrid contribution -1.522 0.720 -1.628 2.342 sum -9.100 -23.258 6.901 25.911 Atomic orbital electron populations 1.23107 0.75366 1.06343 1.05211 1.45251 1.09044 1.02471 1.68899 1.18719 0.86563 0.84243 0.75894 1.90571 1.15771 1.86880 1.50473 1.19698 0.97584 0.91372 1.07273 1.22596 0.91190 1.01048 0.95088 1.21625 1.01930 0.90495 0.99773 1.22132 0.92612 1.00351 0.93134 1.22455 0.99097 0.98271 1.03981 1.83600 1.64034 1.22066 1.16824 1.23043 1.28602 1.17780 0.98865 0.91077 1.26039 0.95140 0.94078 1.03398 1.70111 1.30913 1.15456 1.37920 0.85080 0.79019 0.78146 0.76291 1.18271 1.19797 1.19452 1.21566 0.98469 0.91219 0.95257 1.17304 0.90743 0.86699 1.04177 1.20045 1.03077 0.88493 1.06884 1.25890 0.94573 1.04304 1.07032 1.84221 1.09301 0.97488 1.72411 1.26380 0.99463 1.01525 1.15088 0.87479 0.88061 0.87941 0.79053 0.80295 0.84849 0.91714 0.87975 0.80237 0.77760 0.81512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 8.02 127.77 1.02 1.50 16 2 N -0.53 -12.78 3.12 -661.61 -2.06 -14.84 16 3 C 0.55 18.36 7.47 86.78 0.65 19.01 16 4 O -0.56 -22.92 13.35 -4.00 -0.05 -22.98 16 5 C -0.15 -5.03 5.54 -20.11 -0.11 -5.14 16 6 C -0.08 -1.81 7.54 22.57 0.17 -1.64 16 7 C -0.12 -2.74 10.02 22.21 0.22 -2.52 16 8 C -0.06 -2.10 9.79 22.48 0.22 -1.88 16 9 C -0.13 -5.56 5.45 22.65 0.12 -5.44 16 10 S -0.10 -5.48 21.41 -56.49 -1.21 -6.69 16 11 C -0.54 -31.11 9.46 67.94 0.64 -30.47 16 12 H 0.07 4.02 7.79 -2.91 -0.02 4.00 16 13 C 0.02 1.06 5.49 84.84 0.47 1.53 16 14 N -0.91 -54.87 13.22 21.64 0.29 -54.58 16 15 Si 0.99 44.04 29.55 68.60 2.03 46.07 16 16 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 C -0.04 -1.82 9.34 22.70 0.21 -1.61 16 20 C 0.12 2.78 6.41 36.86 0.24 3.02 16 21 C -0.15 -2.35 9.28 21.30 0.20 -2.15 16 22 C -0.18 -2.49 11.22 66.72 0.75 -1.74 16 23 S 0.10 2.09 23.33 -56.49 -1.32 0.77 16 24 C -0.29 -8.15 10.04 66.82 0.67 -7.48 16 25 H 0.11 0.59 7.22 -2.38 -0.02 0.57 16 26 H 0.10 1.33 4.94 -2.39 -0.01 1.32 16 27 H 0.10 0.77 7.08 -2.39 -0.02 0.75 16 28 H 0.19 2.31 4.27 -2.91 -0.01 2.30 16 29 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.10 4.89 7.82 -2.91 -0.02 4.87 16 33 H 0.18 1.38 6.99 -2.91 -0.02 1.36 16 34 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.17 5.97 5.28 -3.72 -0.02 5.96 16 Total: -1.00 -79.86 324.25 4.28 -75.58 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.14 Total: 11.68 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 5.47 Total: -35.01 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -1.78 Total: -69.42 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.98 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.53 Total: -5.92 kcal Total: -79.86 4.28 -75.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585287818.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.851 kcal (2) G-P(sol) polarization free energy of solvation -79.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds