Wall clock time and date at job start Tue Mar 31 2020 12:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47146 * 162.30465 * 3 2 1 5 5 C 1.33333 * 119.99858 * 272.68202 * 4 3 2 6 6 H 1.08004 * 119.99891 * 191.53535 * 5 4 3 7 7 C 1.46783 * 120.00162 * 11.52555 * 5 4 3 8 8 N 1.29320 * 119.99600 * 11.36658 * 7 5 4 9 9 Si 1.86798 * 119.99990 * 191.35957 * 7 5 4 10 10 H 1.48493 * 109.47182 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47024 * 120.00672 * 9 7 5 12 12 H 1.48501 * 109.47075 * 240.00083 * 9 7 5 13 13 C 1.34777 * 120.00329 * 92.67466 * 4 3 2 14 14 O 1.21470 * 120.00254 * 184.26765 * 13 4 3 15 15 C 1.47714 * 119.99535 * 4.27019 * 13 4 3 16 16 C 1.39421 * 120.08149 * 308.55892 * 15 13 4 17 17 C 1.39323 * 119.69117 * 179.97438 * 16 15 13 18 18 C 1.47746 * 120.07203 * 180.02562 * 17 16 15 19 19 O 1.21477 * 119.99987 * 359.97438 * 18 17 16 20 20 O 1.34702 * 120.00469 * 180.02562 * 18 17 16 21 21 C 1.39767 * 119.85504 * 0.28089 * 17 16 15 22 22 C 1.38070 * 120.15447 * 359.41967 * 21 17 16 23 23 N 1.48009 * 119.84651 * 180.30071 * 22 21 17 24 24 O 1.31699 * 120.00240 * 180.29868 * 23 22 21 25 25 O 1.31706 * 120.00054 * 0.30327 * 23 22 21 26 26 C 1.38082 * 120.31144 * 0.60353 * 22 21 17 27 27 H 1.09000 * 109.47653 * 42.30526 * 3 2 1 28 28 H 1.09004 * 109.47573 * 282.30217 * 3 2 1 29 29 H 0.97003 * 119.99472 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.15235 * 0.02562 * 16 15 13 31 31 H 0.96694 * 117.00629 * 179.97438 * 20 18 17 32 32 H 1.08000 * 119.92561 * 179.70232 * 21 17 16 33 33 H 1.07995 * 119.92952 * 179.69519 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.3168 -0.4198 5 6 3.2668 1.5822 -1.7152 6 1 3.7967 2.4731 -2.0185 7 6 2.7353 0.6635 -2.7291 8 7 1.9188 -0.2781 -2.3839 9 14 3.2381 0.8546 -4.5180 10 1 4.1748 1.9993 -4.6493 11 1 3.9078 -0.3880 -4.9793 12 1 2.0317 1.1038 -5.3473 13 6 3.3713 2.2593 0.5033 14 8 3.7012 3.3746 0.1528 15 6 3.2721 1.9360 1.9412 16 6 2.1137 1.3477 2.4469 17 6 2.0292 1.0456 3.8044 18 6 0.8058 0.4216 4.3492 19 8 -0.1279 0.1717 3.6134 20 8 0.7254 0.1306 5.6620 21 6 3.1021 1.3392 4.6506 22 6 4.2488 1.9162 4.1421 23 7 5.3835 2.2181 5.0433 24 8 6.4764 2.7739 4.5626 25 8 5.3002 1.9308 6.3259 26 6 4.3396 2.2188 2.7979 27 1 2.9717 -0.7592 -0.6917 28 1 2.9714 -0.2181 1.0041 29 1 1.5672 -0.8850 -3.0540 30 1 1.2861 1.1263 1.7893 31 1 -0.0950 -0.2766 5.9720 32 1 3.0360 1.1100 5.7039 33 1 5.2375 2.6745 2.4077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622085.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:16 Heat of formation + Delta-G solvation = -29.198189 kcal Electronic energy + Delta-G solvation = -26181.376666 eV Core-core repulsion = 21984.839712 eV Total energy + Delta-G solvation = -4196.536954 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.28266 -41.10405 -40.54076 -39.04484 -37.84549 -37.24188 -36.32696 -35.69239 -34.34747 -33.35050 -33.08298 -29.47252 -28.00447 -27.24424 -26.23166 -24.57624 -22.68383 -21.53943 -20.15747 -19.94359 -19.50468 -18.93349 -18.33596 -18.06272 -17.87998 -17.50622 -17.27473 -16.85482 -16.81917 -16.64191 -16.03176 -15.37351 -15.13220 -14.78967 -14.55843 -14.31748 -13.99024 -13.66304 -13.54249 -13.44107 -13.21905 -13.01483 -12.70853 -12.62027 -12.47412 -12.42270 -12.32833 -12.10808 -12.01648 -11.94338 -11.32725 -11.04900 -10.93448 -10.56308 -10.40996 -8.68466 -5.92587 -1.99935 -0.98816 -0.40786 -0.22458 0.94684 1.29806 1.45123 1.55699 1.59263 1.71573 1.83182 2.03311 2.14155 2.24398 2.61622 2.78964 3.05522 3.19311 3.30452 3.31406 3.42315 3.57800 3.76482 4.07411 4.23219 4.26245 4.33746 4.48894 4.64211 4.77703 4.85566 5.12040 5.41673 5.45128 5.72380 6.22341 6.80418 6.85658 6.89675 7.10287 7.76783 8.29408 Molecular weight = 319.07amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.004754 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.428678 B = 5888.365075 C = 7570.664151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.251 3.749 3 C 0.208 3.792 4 N -0.399 5.399 5 C -0.381 4.381 6 H 0.096 0.904 7 C 0.023 3.977 8 N -0.850 5.850 9 Si 0.998 3.002 10 H -0.267 1.267 11 H -0.257 1.257 12 H -0.281 1.281 13 C 0.441 3.559 14 O -0.612 6.612 15 C -0.098 4.098 16 C 0.006 3.994 17 C -0.116 4.116 18 C 0.542 3.458 19 O -0.527 6.527 20 O -0.489 6.489 21 C 0.037 3.963 22 C -0.014 4.014 23 N -0.014 5.014 24 O -0.204 6.204 25 O -0.139 6.139 26 C 0.026 3.974 27 H 0.143 0.857 28 H 0.118 0.882 29 H 0.293 0.707 30 H 0.140 0.860 31 H 0.443 0.557 32 H 0.204 0.796 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -5.216 12.748 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.066 4.066 3 C 0.082 3.918 4 N -0.113 5.113 5 C -0.509 4.509 6 H 0.114 0.886 7 C -0.189 4.189 8 N -0.484 5.484 9 Si 0.821 3.179 10 H -0.192 1.192 11 H -0.181 1.181 12 H -0.207 1.207 13 C 0.233 3.767 14 O -0.501 6.501 15 C -0.103 4.103 16 C -0.014 4.014 17 C -0.118 4.118 18 C 0.385 3.615 19 O -0.417 6.417 20 O -0.304 6.304 21 C 0.017 3.983 22 C -0.100 4.100 23 N 0.466 4.534 24 O -0.388 6.388 25 O -0.343 6.343 26 C 0.005 3.995 27 H 0.161 0.839 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.157 0.843 31 H 0.306 0.694 32 H 0.221 0.779 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.570 -4.883 11.649 12.644 hybrid contribution 0.132 0.064 -0.857 0.870 sum -0.438 -4.819 10.792 11.827 Atomic orbital electron populations 1.80997 1.14170 1.08518 1.12856 1.29291 0.95469 0.92375 0.89500 1.19341 0.80967 0.88506 1.03010 1.42602 1.52368 1.09971 1.06339 1.20680 1.38349 1.11100 0.80763 0.88588 1.27562 0.93171 0.93894 1.04242 1.68798 1.24835 1.16389 1.38337 0.84780 0.78311 0.79438 0.75386 1.19152 1.18102 1.20729 1.17772 0.89216 0.85007 0.84682 1.90621 1.56217 1.22211 1.81045 1.19669 0.94189 1.01706 0.94721 1.22069 0.96343 0.88058 0.94900 1.18717 0.94169 1.06569 0.92377 1.20114 0.85404 0.74819 0.81133 1.91046 1.39264 1.50805 1.60593 1.84453 1.48251 1.74768 1.22949 1.21586 0.86684 0.86715 1.03302 1.19973 0.88196 1.12634 0.89237 1.50434 1.02839 0.97064 1.03023 1.96345 1.16954 1.45319 1.80212 1.96251 1.89317 1.55541 0.93190 1.21286 0.99034 0.89604 0.89527 0.83937 0.86468 0.89410 0.84278 0.69360 0.77926 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -21.99 18.48 20.00 0.37 -21.62 16 2 C 0.25 10.40 10.57 89.44 0.95 11.34 16 3 C 0.21 7.63 4.75 84.57 0.40 8.03 16 4 N -0.40 -17.50 2.50 -643.95 -1.61 -19.11 16 5 C -0.38 -18.42 9.66 86.70 0.84 -17.58 16 6 H 0.10 5.07 7.31 -2.91 -0.02 5.04 16 7 C 0.02 1.01 5.35 87.30 0.47 1.47 16 8 N -0.85 -37.25 8.51 23.26 0.20 -37.05 16 9 Si 1.00 36.19 29.66 68.60 2.03 38.23 16 10 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 12 H -0.28 -10.38 7.11 99.48 0.71 -9.68 16 13 C 0.44 19.09 7.13 86.75 0.62 19.70 16 14 O -0.61 -31.50 16.62 -3.62 -0.06 -31.56 16 15 C -0.10 -3.20 4.80 -20.12 -0.10 -3.29 16 16 C 0.01 0.18 7.20 22.82 0.16 0.34 16 17 C -0.12 -2.61 5.87 -20.13 -0.12 -2.73 16 18 C 0.54 11.51 8.27 70.34 0.58 12.09 16 19 O -0.53 -15.75 17.13 19.91 0.34 -15.41 16 20 O -0.49 -5.75 12.67 -56.12 -0.71 -6.46 16 21 C 0.04 0.69 9.14 22.60 0.21 0.90 16 22 C -0.01 -0.34 6.87 36.30 0.25 -0.09 16 23 N -0.01 -0.37 4.98 -46.65 -0.23 -0.60 16 24 O -0.20 -6.28 19.13 3.52 0.07 -6.21 16 25 O -0.14 -3.53 19.13 3.50 0.07 -3.46 16 26 C 0.03 0.72 9.27 22.60 0.21 0.93 16 27 H 0.14 5.24 6.24 -2.39 -0.01 5.22 16 28 H 0.12 3.34 5.81 -2.39 -0.01 3.32 16 29 H 0.29 12.08 8.26 -92.71 -0.77 11.31 16 30 H 0.14 4.86 4.41 -2.91 -0.01 4.85 16 31 H 0.44 1.29 9.11 -74.06 -0.67 0.61 16 32 H 0.20 2.64 7.10 -2.91 -0.02 2.62 16 33 H 0.17 4.80 7.56 -2.91 -0.02 4.77 16 Total: -1.00 -66.73 314.80 5.51 -61.22 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.57 Total: 10.91 kcal Atomic # 6 Polarization: 26.65 SS G_CDS: 4.47 Total: 31.12 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.27 Total: -78.38 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -0.30 Total: -63.10 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.23 kcal Total: -66.73 5.51 -61.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622085.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.022 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds