Wall clock time and date at job start Tue Mar 31 2020 12:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99933 * 2 1 4 4 H 1.48499 * 109.46922 * 270.88588 * 3 2 1 5 5 H 1.48507 * 109.47003 * 30.88142 * 3 2 1 6 6 H 1.48492 * 109.47163 * 150.88099 * 3 2 1 7 7 C 1.37871 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99824 * 358.71131 * 7 2 1 9 9 C 1.50696 * 120.00356 * 178.70930 * 7 2 1 10 10 C 1.52997 * 115.55145 * 86.68362 * 9 7 2 11 11 O 1.45202 * 109.47049 * 64.76536 * 10 9 7 12 12 C 1.34870 * 116.99997 * 184.22654 * 11 10 9 13 13 O 1.21598 * 120.00328 * 5.18519 * 12 11 10 14 14 C 1.46695 * 119.99977 * 185.18123 * 12 11 10 15 15 N 1.38392 * 125.47250 * 354.74394 * 14 12 11 16 16 H 0.96994 * 125.60382 * 0.05421 * 15 14 12 17 17 C 1.37496 * 108.78461 * 180.02562 * 15 14 12 18 18 C 1.39243 * 133.11678 * 180.02562 * 17 15 14 19 19 C 1.37673 * 119.80925 * 179.97438 * 18 17 15 20 20 C 1.38933 * 120.65026 * 359.97438 * 19 18 17 21 21 C 1.36440 * 120.60676 * 0.02562 * 20 19 18 22 22 C 1.40098 * 119.83807 * 0.25247 * 21 20 19 23 23 C 1.36123 * 125.47206 * 174.78524 * 14 12 11 24 24 Cl 1.73597 * 126.15521 * 359.96117 * 23 14 12 25 25 C 1.52998 * 117.50196 * 232.35496 * 9 7 2 26 26 C 1.53002 * 117.50040 * 301.01629 * 9 7 2 27 27 H 0.97003 * 120.00528 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47017 * 304.76914 * 10 9 7 29 29 H 1.08993 * 109.47596 * 184.76981 * 10 9 7 30 30 H 1.07994 * 120.09555 * 359.97438 * 18 17 15 31 31 H 1.08001 * 119.67307 * 179.97438 * 19 18 17 32 32 H 1.07996 * 119.69821 * 180.02562 * 20 19 18 33 33 H 1.08004 * 120.08373 * 179.97438 * 21 20 19 34 34 H 1.09000 * 117.49828 * 215.00196 * 25 9 7 35 35 H 1.08999 * 117.50006 * 0.02562 * 25 9 7 36 36 H 1.08997 * 117.49642 * 359.97318 * 26 9 7 37 37 H 1.08998 * 117.50152 * 144.96881 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4778 2.0573 -1.3999 5 1 1.4559 2.6473 0.7186 6 1 3.5558 1.4350 0.6813 7 6 2.0045 -1.1939 -0.0005 8 1 1.4647 -2.1292 0.0201 9 6 3.5112 -1.1941 -0.0299 10 6 4.1978 -1.0994 1.3340 11 8 3.8950 -2.2875 2.1118 12 6 4.3546 -2.3231 3.3793 13 8 4.9086 -1.3498 3.8528 14 6 4.1859 -3.5362 4.1869 15 7 3.4866 -4.6666 3.8017 16 1 3.0293 -4.7864 2.9547 17 6 3.5473 -5.5921 4.8167 18 6 3.0320 -6.8771 4.9651 19 6 3.2654 -7.5781 6.1268 20 6 4.0118 -7.0165 7.1552 21 6 4.5270 -5.7590 7.0330 22 6 4.2987 -5.0228 5.8631 23 6 4.6914 -3.7303 5.4357 24 17 5.6413 -2.5961 6.3439 25 6 4.1967 -2.0346 -1.1090 26 6 4.1948 -0.5075 -1.2141 27 1 -0.4851 0.8400 0.0004 28 1 3.8361 -0.2173 1.8624 29 1 5.2759 -1.0221 1.1935 30 1 2.4509 -7.3225 4.1712 31 1 2.8642 -8.5745 6.2397 32 1 4.1858 -7.5804 8.0597 33 1 5.1057 -5.3305 7.8379 34 1 5.1368 -2.5201 -0.8472 35 1 3.5579 -2.5872 -1.7980 36 1 3.5547 -0.0561 -1.9721 37 1 5.1334 0.0121 -1.0213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:58 Heat of formation + Delta-G solvation = -2.383722 kcal Electronic energy + Delta-G solvation = -23535.707382 eV Core-core repulsion = 19884.582698 eV Total energy + Delta-G solvation = -3651.124683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75620 -39.76554 -37.39064 -36.91966 -36.47635 -35.54967 -32.20980 -32.18266 -30.01767 -29.21431 -27.43834 -25.54742 -24.17739 -22.37767 -21.83688 -21.51417 -20.27773 -19.26137 -18.36626 -17.53193 -16.84114 -16.18955 -16.11128 -15.85429 -15.07602 -14.73083 -14.66862 -14.47882 -14.09326 -13.95341 -13.67096 -13.06664 -12.67799 -12.61107 -12.31906 -12.13251 -12.09126 -11.78070 -11.33721 -11.21827 -11.01333 -10.97891 -10.63524 -10.40314 -10.22535 -10.07693 -9.80870 -9.71490 -9.13014 -8.68434 -8.67013 -8.54910 -7.95144 -6.19535 -4.23557 0.45004 1.35929 1.76858 1.99748 2.71156 3.00851 3.12304 3.22515 3.33404 3.35269 3.62015 4.33505 4.40857 4.59096 4.76629 4.87620 4.93222 5.05397 5.10161 5.22385 5.29835 5.40719 5.55823 5.75425 5.86048 5.87957 6.00934 6.06627 6.14257 6.21011 6.26719 6.33720 6.35531 6.58010 6.75213 6.77543 6.93286 6.98295 7.17387 7.60445 8.00270 8.40424 8.83323 9.42379 10.92093 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.003613 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.562589 B = 7748.709612 C = 8356.788059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.485 4.485 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.109 3.891 11 O -0.331 6.331 12 C 0.517 3.483 13 O -0.483 6.483 14 C 0.064 3.936 15 N -0.552 5.552 16 H 0.437 0.563 17 C 0.125 3.875 18 C -0.128 4.128 19 C -0.084 4.084 20 C -0.147 4.147 21 C -0.055 4.055 22 C -0.112 4.112 23 C -0.040 4.040 24 Cl -0.016 7.016 25 C -0.173 4.173 26 C -0.189 4.189 27 H 0.266 0.734 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -13.307 11.369 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.522 4.522 8 H 0.098 0.902 9 C -0.007 4.007 10 C 0.036 3.964 11 O -0.246 6.246 12 C 0.359 3.641 13 O -0.371 6.371 14 C -0.046 4.046 15 N -0.157 5.157 16 H 0.278 0.722 17 C 0.013 3.987 18 C -0.148 4.148 19 C -0.104 4.104 20 C -0.166 4.166 21 C -0.074 4.074 22 C -0.117 4.117 23 C -0.075 4.075 24 Cl 0.013 6.987 25 C -0.210 4.210 26 C -0.226 4.226 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.142 -12.698 11.367 19.340 hybrid contribution 0.227 1.227 -0.409 1.314 sum 9.370 -11.471 10.958 18.424 Atomic orbital electron populations 1.69871 1.06307 1.27270 1.49608 1.24987 0.94648 0.99018 0.93830 0.86915 0.80572 0.83567 0.78622 1.20113 1.21715 1.18474 1.20181 0.85843 0.94623 1.51575 0.90192 1.19324 0.95592 1.01254 0.84564 1.23166 0.97331 0.84227 0.91656 1.86594 1.70120 1.45306 1.22602 1.19792 0.76746 0.85665 0.81848 1.90923 1.39632 1.34091 1.72431 1.18897 1.03111 0.88145 0.94497 1.41975 1.45102 1.11361 1.17263 0.72212 1.18261 1.00178 0.92068 0.88165 1.20144 1.03409 0.91516 0.99741 1.20929 0.97542 0.99491 0.92433 1.20644 1.00584 0.95696 0.99683 1.20376 0.98048 0.93724 0.95264 1.17832 1.04109 0.93274 0.96484 1.19936 1.02763 0.92465 0.92382 1.98363 1.69188 1.58690 1.72431 1.22836 1.01071 0.92627 1.04502 1.23008 1.01294 0.95509 1.02766 0.92391 0.90895 0.93198 0.85266 0.85240 0.85578 0.85475 0.90768 0.89117 0.88669 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.21 24.88 -169.99 -4.23 16.98 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.00 5.74 56.52 0.32 -5.68 16 7 C -0.49 -13.08 9.35 -34.44 -0.32 -13.40 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 C -0.01 -0.14 1.06 -155.66 -0.16 -0.31 16 10 C 0.11 2.34 5.01 37.16 0.19 2.52 16 11 O -0.33 -6.70 10.16 -40.96 -0.42 -7.12 16 12 C 0.52 9.80 7.93 34.15 0.27 10.07 16 13 O -0.48 -9.94 15.12 -19.34 -0.29 -10.23 16 14 C 0.06 1.04 7.00 -82.25 -0.58 0.46 16 15 N -0.55 -7.50 6.20 -7.34 -0.05 -7.54 16 16 H 0.44 5.29 8.96 -40.82 -0.37 4.92 16 17 C 0.12 1.55 7.25 -83.97 -0.61 0.94 16 18 C -0.13 -1.24 10.08 -39.41 -0.40 -1.64 16 19 C -0.08 -0.70 10.01 -39.53 -0.40 -1.09 16 20 C -0.15 -1.25 9.97 -39.97 -0.40 -1.65 16 21 C -0.06 -0.58 10.06 -39.53 -0.40 -0.98 16 22 C -0.11 -1.47 6.16 -106.90 -0.66 -2.13 16 23 C -0.04 -0.60 6.72 -39.03 -0.26 -0.86 16 24 Cl -0.02 -0.23 27.69 -51.86 -1.44 -1.67 16 25 C -0.17 -3.35 9.96 -26.69 -0.27 -3.61 16 26 C -0.19 -3.81 7.62 -26.69 -0.20 -4.01 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.07 1.68 6.47 -51.93 -0.34 1.34 16 29 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.09 2.00 7.29 -51.93 -0.38 1.62 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 335.44 15.07 5.05 5.05 Total: -1.00 -30.95 335.44 -8.98 -39.92 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.10 Total: 4.00 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -4.29 Total: -13.61 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.73 Total: -33.33 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.71 Total: -17.35 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.23 Total: 16.98 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.44 Total: -1.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.95 -8.98 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.540 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds