Wall clock time and date at job start Tue Mar 31 2020 13:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39795 * 119.97494 * 330.77869 * 3 2 1 5 5 C 1.37087 * 120.02255 * 179.72679 * 4 3 2 6 6 C 1.39991 * 119.97631 * 0.27573 * 5 4 3 7 7 C 1.47066 * 120.02272 * 179.97438 * 6 5 4 8 8 C 1.35055 * 120.00503 * 38.78779 * 7 6 5 9 9 C 1.46346 * 119.99447 * 14.26211 * 8 7 6 10 10 O 1.21760 * 120.00599 * 6.42723 * 9 8 7 11 11 C 1.47625 * 119.99786 * 186.42300 * 9 8 7 12 12 C 1.39838 * 120.08015 * 359.73007 * 11 9 8 13 13 C 1.37623 * 119.91846 * 179.73375 * 12 11 9 14 14 C 1.39176 * 120.08191 * 0.51929 * 13 12 11 15 15 O 1.35541 * 119.91913 * 179.74145 * 14 13 12 16 16 C 1.34766 * 116.99603 * 173.69419 * 15 14 13 17 17 H 1.07992 * 120.00325 * 5.11012 * 16 15 14 18 18 C 1.38781 * 119.99456 * 185.11234 * 16 15 14 19 19 N 1.31471 * 120.00347 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99591 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47020 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46967 * 119.99972 * 20 18 16 23 23 H 1.48502 * 109.47212 * 240.00282 * 20 18 16 24 24 C 1.39179 * 120.15593 * 359.75443 * 14 13 12 25 25 C 1.37621 * 120.07900 * 359.97438 * 24 14 13 26 26 C 1.39996 * 119.95401 * 359.97438 * 6 5 4 27 27 C 1.37084 * 119.97168 * 0.02562 * 26 6 5 28 28 H 1.08002 * 119.98989 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.01183 * 180.29743 * 5 4 3 30 30 H 1.08006 * 119.99924 * 218.78578 * 7 6 5 31 31 H 1.07993 * 120.00238 * 194.26375 * 8 7 6 32 32 H 1.07998 * 120.03710 * 359.97348 * 12 11 9 33 33 H 1.08005 * 119.95644 * 180.23054 * 13 12 11 34 34 H 0.96998 * 119.99938 * 180.02562 * 19 18 16 35 35 H 1.08002 * 119.95816 * 179.97438 * 24 14 13 36 36 H 1.07999 * 120.03789 * 179.97438 * 25 24 14 37 37 H 1.07998 * 120.01552 * 179.97438 * 26 6 5 38 38 H 1.08005 * 119.98670 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 -1.0559 0.5912 5 6 4.6378 -1.0591 0.5868 6 6 5.3378 -0.0009 -0.0049 7 6 6.8084 -0.0030 -0.0096 8 6 7.4816 -1.1568 -0.2088 9 6 6.7803 -2.3333 -0.7244 10 8 5.6206 -2.2418 -1.0840 11 6 7.4790 -3.6309 -0.8085 12 6 8.8126 -3.7366 -0.4013 13 6 9.4591 -4.9493 -0.4761 14 6 8.7906 -6.0672 -0.9663 15 8 9.4321 -7.2587 -1.0434 16 6 8.6949 -8.3283 -1.4021 17 1 7.6628 -8.1998 -1.6928 18 6 9.2623 -9.5948 -1.3979 19 7 10.5186 -9.7513 -1.0435 20 14 8.2402 -11.0776 -1.8945 21 1 6.8666 -10.6365 -2.2463 22 1 8.8639 -11.7376 -3.0695 23 1 8.1779 -12.0372 -0.7628 24 6 7.4650 -5.9644 -1.3779 25 6 6.8105 -4.7563 -1.3008 26 6 4.6369 1.0592 -0.5920 27 6 3.2661 1.0603 -0.5865 28 1 2.7267 -1.8724 1.0473 29 1 5.1776 -1.8778 1.0393 30 1 7.3503 0.9183 0.1460 31 1 8.5372 -1.2112 0.0125 32 1 9.3334 -2.8685 -0.0250 33 1 10.4880 -5.0324 -0.1582 34 1 10.9152 -10.6365 -1.0410 35 1 6.9494 -6.8339 -1.7582 36 1 5.7820 -4.6772 -1.6207 37 1 5.1759 1.8763 -1.0483 38 1 2.7251 1.8779 -1.0397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033476753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:16 Heat of formation + Delta-G solvation = 47.327177 kcal Electronic energy + Delta-G solvation = -23794.234608 eV Core-core repulsion = 20147.698401 eV Total energy + Delta-G solvation = -3646.536208 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.23403 -39.31001 -38.49911 -36.67367 -36.23650 -33.97723 -32.59756 -31.36610 -30.85351 -30.25602 -29.21687 -25.80418 -25.11879 -23.13714 -22.90367 -22.09078 -20.91062 -19.16116 -18.99640 -18.10709 -17.52923 -16.53886 -15.80375 -15.50759 -15.03597 -14.80489 -14.58139 -14.35086 -14.15200 -14.06292 -13.89971 -13.84332 -13.45891 -13.36489 -13.01495 -12.92438 -12.84345 -12.70274 -12.37857 -11.89727 -11.73576 -11.59112 -11.43068 -11.29444 -10.97664 -10.78357 -10.57575 -10.07583 -9.62028 -9.49744 -9.12866 -9.04740 -8.43247 -8.24215 -7.47453 -6.72473 -4.27222 0.11392 1.07152 1.30439 1.89287 2.10651 2.48668 2.86414 2.98464 3.01642 3.07590 3.37742 3.69878 3.77265 3.77881 4.36375 4.46406 4.48600 4.65085 4.67434 4.86149 4.99012 5.08863 5.13663 5.34527 5.43580 5.53190 5.55733 5.60566 5.75672 5.87439 5.98394 6.00195 6.11816 6.17951 6.22138 6.40569 6.44403 6.62488 6.69098 6.84864 6.93218 7.16189 7.19631 7.29695 7.56972 7.73459 7.97438 8.72429 9.38065 10.43804 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.002444 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.156258 B =11451.903302 C =12700.452465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.259 3.741 3 C -0.028 4.028 4 C -0.080 4.080 5 C -0.046 4.046 6 C -0.033 4.033 7 C -0.055 4.055 8 C -0.202 4.202 9 C 0.418 3.582 10 O -0.472 6.472 11 C -0.272 4.272 12 C -0.028 4.028 13 C -0.206 4.206 14 C 0.175 3.825 15 O -0.158 6.158 16 C -0.393 4.393 17 H 0.099 0.901 18 C 0.043 3.957 19 N -0.848 5.848 20 Si 0.945 3.055 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.250 4.250 25 C -0.007 4.007 26 C -0.106 4.106 27 C -0.081 4.081 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.275 0.725 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 17.932 2.926 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.056 4.056 3 C -0.032 4.032 4 C -0.100 4.100 5 C -0.065 4.065 6 C -0.034 4.034 7 C -0.074 4.074 8 C -0.221 4.221 9 C 0.304 3.696 10 O -0.354 6.354 11 C -0.274 4.274 12 C -0.046 4.046 13 C -0.225 4.225 14 C 0.118 3.882 15 O -0.058 6.058 16 C -0.468 4.468 17 H 0.117 0.883 18 C -0.164 4.164 19 N -0.481 5.481 20 Si 0.769 3.231 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.269 4.269 25 C -0.026 4.026 26 C -0.124 4.124 27 C -0.101 4.101 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.076 17.663 2.805 19.233 hybrid contribution 0.234 -0.907 -0.361 1.004 sum -6.841 16.756 2.445 18.263 Atomic orbital electron populations 1.81238 1.12170 1.08010 1.08886 1.25828 0.92782 0.93479 0.93469 1.16066 0.84017 0.98173 1.04911 1.20857 0.94225 0.96782 0.98172 1.21026 0.93364 0.95709 0.96356 1.19198 0.93152 0.94192 0.96844 1.22494 0.92185 0.97832 0.94859 1.23818 1.02000 0.94369 1.01870 1.20312 0.86538 0.87629 0.75141 1.90654 1.17631 1.86430 1.40664 1.19705 0.96268 0.94793 1.16617 1.20848 0.92916 0.96104 0.94779 1.20168 1.01110 0.91453 1.09751 1.19658 0.90660 0.87197 0.90718 1.83883 1.36809 1.12873 1.72246 1.21577 0.96170 0.83205 1.45889 0.88331 1.25431 0.96460 0.98338 0.96188 1.70000 1.11800 1.24485 1.41769 0.85571 0.79289 0.79602 0.78621 1.18762 1.19843 1.19822 1.21125 0.95885 0.98836 1.11067 1.20910 0.98451 0.91130 0.92075 1.21000 0.93494 0.98239 0.99656 1.20820 0.94230 0.96998 0.98098 0.85196 0.85420 0.84558 0.84341 0.86222 0.85959 0.91508 0.85076 0.86370 0.85020 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.83 18.54 41.84 0.78 -5.06 16 2 C 0.26 3.00 15.32 -22.47 -0.34 2.66 16 3 C -0.03 -0.29 5.74 -106.81 -0.61 -0.90 16 4 C -0.08 -0.83 9.71 -39.42 -0.38 -1.21 16 5 C -0.05 -0.51 6.55 -39.34 -0.26 -0.76 16 6 C -0.03 -0.32 4.66 -105.00 -0.49 -0.81 16 7 C -0.06 -0.47 9.82 -37.13 -0.36 -0.83 16 8 C -0.20 -2.05 9.33 -37.45 -0.35 -2.40 16 9 C 0.42 5.88 5.94 -32.49 -0.19 5.68 16 10 O -0.47 -7.40 12.17 5.14 0.06 -7.34 16 11 C -0.27 -4.42 5.88 -104.87 -0.62 -5.04 16 12 C -0.03 -0.43 9.44 -39.21 -0.37 -0.80 16 13 C -0.21 -3.86 9.97 -39.46 -0.39 -4.25 16 14 C 0.18 3.88 6.66 -38.88 -0.26 3.62 16 15 O -0.16 -4.16 9.74 0.87 0.01 -4.15 16 16 C -0.39 -10.21 9.49 30.93 0.29 -9.91 16 17 H 0.10 2.37 5.19 -52.49 -0.27 2.10 16 18 C 0.04 1.09 5.50 -17.51 -0.10 1.00 16 19 N -0.85 -23.18 13.67 55.49 0.76 -22.43 16 20 Si 0.95 19.17 29.55 -169.99 -5.02 14.14 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.25 -5.09 9.14 -39.46 -0.36 -5.46 16 25 C -0.01 -0.13 9.59 -39.21 -0.38 -0.50 16 26 C -0.11 -0.87 9.75 -39.34 -0.38 -1.26 16 27 C -0.08 -0.69 9.71 -39.42 -0.38 -1.07 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.13 1.45 6.70 -52.48 -0.35 1.10 16 30 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.14 1.10 6.35 -52.49 -0.33 0.77 16 32 H 0.12 1.37 6.23 -52.49 -0.33 1.04 16 33 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.13 2.68 5.63 -52.49 -0.30 2.38 16 36 H 0.12 2.00 7.64 -52.49 -0.40 1.60 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -30.28 343.52 -7.41 -37.69 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.23 Total: 4.21 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -5.94 Total: -22.25 kcal Atomic # 7 Polarization: -29.01 SS G_CDS: 1.53 Total: -27.48 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.28 -7.41 -37.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033476753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.018 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds