Wall clock time and date at job start Tue Mar 31 2020 13:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46639 * 2 1 4 4 C 1.36827 * 120.00092 * 263.73017 * 3 2 1 5 5 H 1.08001 * 119.99885 * 143.10123 * 4 3 2 6 6 C 1.38977 * 119.99869 * 323.09592 * 4 3 2 7 7 N 1.31427 * 119.99788 * 157.14460 * 6 4 3 8 8 Si 1.86797 * 120.00327 * 337.14916 * 6 4 3 9 9 H 1.48508 * 109.47177 * 95.14611 * 8 6 4 10 10 H 1.48496 * 109.47373 * 215.14323 * 8 6 4 11 11 H 1.48495 * 109.47219 * 335.14896 * 8 6 4 12 12 C 1.34780 * 119.99882 * 83.73803 * 3 2 1 13 13 O 1.21915 * 119.99967 * 179.97438 * 12 3 2 14 14 C 1.40805 * 119.99735 * 359.97438 * 12 3 2 15 15 C 1.36303 * 119.99387 * 180.02562 * 14 12 3 16 16 C 1.40796 * 119.99708 * 179.97438 * 15 14 12 17 17 C 1.39234 * 126.84155 * 309.97736 * 16 15 14 18 18 Cl 1.73607 * 125.93518 * 0.02562 * 17 16 15 19 19 N 1.32325 * 108.12721 * 180.02562 * 17 16 15 20 20 C 1.33269 * 109.89188 * 0.02562 * 19 17 16 21 21 C 1.40572 * 131.74454 * 179.97438 * 20 19 17 22 22 C 1.36365 * 119.40927 * 180.02562 * 21 20 19 23 23 C 1.40165 * 119.62890 * 0.02562 * 22 21 20 24 24 C 1.35286 * 120.12509 * 359.97438 * 23 22 21 25 25 N 1.36033 * 120.62002 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.47244 * 59.99932 * 1 2 3 27 27 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47332 * 299.99661 * 1 2 3 29 29 H 1.09002 * 109.46831 * 240.00301 * 2 1 3 30 30 H 1.09000 * 109.46889 * 120.00375 * 2 1 3 31 31 H 0.97005 * 120.00215 * 180.02562 * 7 6 4 32 32 H 1.07998 * 119.99901 * 0.02562 * 14 12 3 33 33 H 1.07998 * 120.00712 * 359.97438 * 15 14 12 34 34 H 1.08004 * 120.29689 * 0.02562 * 21 20 19 35 35 H 1.07992 * 120.18717 * 180.29213 * 22 21 20 36 36 H 1.07998 * 119.93521 * 179.97438 * 23 22 21 37 37 H 1.07997 * 119.68905 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3683 1.9832 -1.1779 5 1 2.1574 3.0311 -1.3323 6 6 2.9951 1.2461 -2.1754 7 7 2.9339 1.6470 -3.4256 8 14 3.9246 -0.3145 -1.7396 9 1 3.0353 -1.4890 -1.9270 10 1 5.1115 -0.4467 -2.6221 11 1 4.3657 -0.2487 -0.3232 12 6 2.1228 2.0590 1.1603 13 8 2.5295 3.2084 1.1603 14 6 1.7622 1.4397 2.3723 15 6 1.8675 2.1254 3.5456 16 6 1.5065 1.5063 4.7575 17 6 0.3225 0.8248 5.0266 18 17 -0.9888 0.5824 3.9150 19 7 0.3704 0.3940 6.2769 20 6 1.5228 0.7587 6.8382 21 6 2.0441 0.5483 8.1266 22 6 3.2758 1.0429 8.4396 23 6 4.0030 1.7532 7.4746 24 6 3.4849 1.9458 6.2398 25 7 2.2575 1.4549 5.9191 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.3712 1.1324 -4.1220 32 1 1.4023 0.4214 2.3722 33 1 2.2278 3.1435 3.5457 34 1 1.4743 -0.0002 8.8621 35 1 3.6904 0.8846 9.4241 36 1 4.9787 2.1474 7.7173 37 1 4.0512 2.4945 5.5018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:46 Heat of formation + Delta-G solvation = 88.164171 kcal Electronic energy + Delta-G solvation = -23785.811918 eV Core-core repulsion = 20170.906437 eV Total energy + Delta-G solvation = -3614.905481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.95676 -39.11890 -37.80229 -36.50379 -35.44637 -34.43991 -32.96478 -32.30289 -30.37614 -29.79070 -28.51841 -25.77763 -23.97579 -23.45713 -22.93040 -22.55918 -20.77382 -18.38960 -17.86451 -17.15652 -16.98749 -16.61319 -16.23085 -16.07607 -15.64973 -14.99860 -14.49481 -14.21886 -13.94740 -13.91147 -13.32035 -12.90148 -12.80997 -12.77860 -12.41273 -12.22835 -12.12997 -11.96322 -11.46387 -11.34871 -11.27629 -11.25620 -11.03746 -10.80526 -10.34487 -10.17410 -9.97244 -9.42188 -9.17964 -8.84574 -8.60921 -7.86051 -7.63127 -6.54747 -4.01009 0.42827 0.62115 1.51472 1.67622 2.40337 2.66060 2.97937 3.16066 3.20386 3.22151 3.98644 4.03642 4.19600 4.33865 4.41326 4.53030 4.64229 4.79110 4.96011 5.02421 5.22042 5.38645 5.46015 5.56824 5.68303 5.79285 5.85274 5.86566 5.93380 6.02414 6.18993 6.23491 6.38703 6.50483 6.59710 6.73516 6.78613 7.44145 7.45121 8.19929 8.42608 8.87610 9.20163 9.72009 10.56095 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.003899 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.398243 B = 7179.648450 C = 7956.568198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 N -0.444 5.444 4 C -0.305 4.305 5 H 0.110 0.890 6 C 0.060 3.940 7 N -0.849 5.849 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.262 1.262 12 C 0.474 3.526 13 O -0.576 6.576 14 C -0.128 4.128 15 C -0.072 4.072 16 C -0.006 4.006 17 C 0.126 3.874 18 Cl 0.015 6.985 19 N -0.483 5.483 20 C 0.230 3.770 21 C -0.080 4.080 22 C -0.098 4.098 23 C -0.142 4.142 24 C 0.068 3.932 25 N -0.346 5.346 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.277 0.723 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -5.152 20.867 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.043 4.043 3 N -0.164 5.164 4 C -0.433 4.433 5 H 0.127 0.873 6 C -0.147 4.147 7 N -0.484 5.484 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.186 1.186 12 C 0.267 3.733 13 O -0.462 6.462 14 C -0.151 4.151 15 C -0.094 4.094 16 C -0.120 4.120 17 C -0.037 4.037 18 Cl 0.043 6.957 19 N -0.204 5.204 20 C -0.010 4.010 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.163 4.163 24 C -0.055 4.055 25 N -0.017 5.017 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.748 -5.069 20.841 21.462 hybrid contribution 0.923 -0.564 -0.515 1.198 sum 0.176 -5.633 20.326 21.093 Atomic orbital electron populations 1.22161 0.95777 1.01261 1.02937 1.21918 0.95104 0.85584 1.01662 1.43841 1.54637 1.11343 1.06529 1.19138 1.37047 0.98281 0.88802 0.87263 1.25421 0.96265 0.98369 0.94661 1.69776 1.39329 1.39897 0.99448 0.86966 0.80280 0.82682 0.79836 1.19891 1.21057 1.18627 1.16625 0.84928 0.88211 0.83537 1.90724 1.50850 1.17834 1.86788 1.22517 0.98837 0.99945 0.93788 1.19974 1.01950 0.99478 0.88020 1.18523 0.93564 1.11625 0.88267 1.21391 0.90582 1.00699 0.91006 1.98399 1.44824 1.95577 1.56894 1.70006 1.17868 1.25445 1.07031 1.20603 0.88906 0.98988 0.92542 1.20283 0.96228 1.01435 0.92074 1.21090 0.93772 0.97083 1.00259 1.20894 1.01794 1.01799 0.91789 1.21803 0.85003 0.99706 0.99032 1.42742 1.13060 1.34708 1.11180 0.91337 0.92478 0.92676 0.90556 0.91927 0.91281 0.86296 0.84422 0.82923 0.83744 0.82788 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.03 37.16 0.37 -2.44 16 2 C 0.08 1.62 4.34 -4.04 -0.02 1.60 16 3 N -0.44 -10.77 2.19 -118.31 -0.26 -11.03 16 4 C -0.31 -8.51 9.36 -15.05 -0.14 -8.65 16 5 H 0.11 3.42 7.89 -52.49 -0.41 3.00 16 6 C 0.06 1.63 5.26 -17.45 -0.09 1.54 16 7 N -0.85 -23.84 13.96 55.50 0.77 -23.07 16 8 Si 0.88 20.09 25.07 -169.99 -4.26 15.83 16 9 H -0.27 -5.79 6.66 56.52 0.38 -5.41 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.26 -6.03 7.11 56.52 0.40 -5.62 16 12 C 0.47 11.21 7.33 -15.29 -0.11 11.10 16 13 O -0.58 -15.62 15.96 5.00 0.08 -15.54 16 14 C -0.13 -2.42 7.41 -39.31 -0.29 -2.71 16 15 C -0.07 -1.22 9.16 -39.31 -0.36 -1.58 16 16 C -0.01 -0.10 6.52 -83.55 -0.55 -0.65 16 17 C 0.13 2.00 7.71 -16.97 -0.13 1.87 16 18 Cl 0.01 0.22 28.16 -51.86 -1.46 -1.24 16 19 N -0.48 -7.53 11.25 -9.25 -0.10 -7.63 16 20 C 0.23 3.07 7.77 -155.90 -1.21 1.86 16 21 C -0.08 -0.74 10.10 -39.38 -0.40 -1.14 16 22 C -0.10 -0.66 10.07 -39.53 -0.40 -1.06 16 23 C -0.14 -1.00 10.00 -39.91 -0.40 -1.40 16 24 C 0.07 0.68 10.82 -16.74 -0.18 0.50 16 25 N -0.35 -4.65 2.96 -60.15 -0.18 -4.83 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.91 7.41 -51.93 -0.38 0.52 16 29 H 0.08 1.61 3.55 -51.93 -0.18 1.42 16 30 H 0.06 1.10 6.45 -51.93 -0.34 0.77 16 31 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.12 2.05 5.58 -52.49 -0.29 1.76 16 33 H 0.14 2.40 7.46 -52.49 -0.39 2.01 16 34 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 36 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -33.33 331.47 -8.02 -41.35 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.70 Total: 2.32 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.90 Total: -1.15 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.23 Total: -46.55 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.08 Total: -15.54 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.26 Total: 15.83 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.46 Total: -1.24 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.33 -8.02 -41.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.512 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds