Wall clock time and date at job start Tue Mar 31 2020 12:33:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53003 * 109.47423 * 2 1
4 4 H 1.08999 * 109.47317 * 179.71841 * 3 2 1
5 5 C 1.50699 * 109.47053 * 59.71487 * 3 2 1
6 6 H 1.08001 * 119.99605 * 240.00123 * 5 3 2
7 7 C 1.37874 * 120.00240 * 60.00288 * 5 3 2
8 8 N 1.31517 * 120.00004 * 359.97438 * 7 5 3
9 9 Si 1.86795 * 120.00094 * 179.97438 * 7 5 3
10 10 H 1.48498 * 109.47206 * 60.00040 * 9 7 5
11 11 H 1.48504 * 109.47246 * 180.02562 * 9 7 5
12 12 H 1.48497 * 109.47296 * 300.00031 * 9 7 5
13 13 N 1.46909 * 109.46536 * 299.71498 * 3 2 1
14 14 C 1.46891 * 110.99638 * 273.74868 * 13 3 2
15 15 C 1.50705 * 109.46819 * 174.46169 * 14 13 3
16 16 C 1.38159 * 120.02529 * 259.72814 * 15 14 13
17 17 C 1.38346 * 120.04511 * 179.72193 * 16 15 14
18 18 Cl 1.73603 * 119.95850 * 180.28008 * 17 16 15
19 19 C 1.38387 * 120.08276 * 0.55089 * 17 16 15
20 20 C 1.38118 * 120.04192 * 359.72259 * 19 17 16
21 21 C 1.38708 * 120.01827 * 80.00145 * 15 14 13
22 22 O 1.35918 * 120.04213 * 0.02562 * 21 15 14
23 23 C 1.42901 * 116.99777 * 180.02562 * 22 21 15
24 24 F 1.39901 * 109.47445 * 300.00299 * 23 22 21
25 25 F 1.39902 * 109.47226 * 60.00224 * 23 22 21
26 26 H 1.09001 * 109.47395 * 182.34716 * 1 2 3
27 27 H 1.08995 * 109.47348 * 302.35462 * 1 2 3
28 28 H 1.09005 * 109.46498 * 62.35374 * 1 2 3
29 29 H 1.08997 * 109.47621 * 239.99405 * 2 1 3
30 30 H 1.09001 * 109.46921 * 119.99591 * 2 1 3
31 31 H 0.96994 * 120.00027 * 180.02562 * 8 7 5
32 32 H 1.00901 * 110.99281 * 149.79950 * 13 3 2
33 33 H 1.08993 * 109.47535 * 294.46000 * 14 13 3
34 34 H 1.08998 * 109.47305 * 54.46991 * 14 13 3
35 35 H 1.08002 * 119.97736 * 359.97438 * 16 15 14
36 36 H 1.07998 * 119.98058 * 179.70577 * 19 17 16
37 37 H 1.07998 * 120.02246 * 179.97438 * 20 19 17
38 38 H 1.09001 * 109.46910 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1300 1.4425 0.0051
5 6 1.5320 2.1550 1.2269
6 1 0.9116 3.0329 1.1234
7 6 1.8592 1.6860 2.4815
8 7 2.6143 0.6166 2.6075
9 14 1.2300 2.5696 4.0023
10 1 -0.2550 2.5702 3.9955
11 1 1.7197 1.8719 5.2183
12 1 1.7255 3.9694 4.0020
13 7 1.5559 2.1329 -1.2030
14 6 2.4609 1.9093 -2.3382
15 6 1.8651 2.5159 -3.5825
16 6 1.2157 1.7130 -4.5003
17 6 0.6636 2.2702 -5.6399
18 17 -0.1582 1.2603 -6.7881
19 6 0.7705 3.6309 -5.8684
20 6 1.4239 4.4361 -4.9560
21 6 1.9733 3.8800 -3.8098
22 8 2.6171 4.6706 -2.9110
23 6 2.6898 6.0661 -3.2098
24 9 3.3638 6.2491 -4.4220
25 9 1.3963 6.5893 -3.3118
26 1 -0.3634 -1.0268 0.0421
27 1 -0.3634 0.5499 0.8681
28 1 -0.3632 0.4769 -0.9104
29 1 1.8934 -0.5139 -0.8899
30 1 1.8933 -0.5138 0.8900
31 1 2.8441 0.2865 3.4901
32 1 1.4315 3.1189 -1.0285
33 1 3.4243 2.3755 -2.1323
34 1 2.5996 0.8385 -2.4868
35 1 1.1354 0.6501 -4.3261
36 1 0.3430 4.0635 -6.7609
37 1 1.5075 5.4979 -5.1349
38 1 3.2283 6.5805 -2.4138
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000054183582.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:33:56
Heat of formation + Delta-G solvation = -133.469795 kcal
Electronic energy + Delta-G solvation = -24947.680819 eV
Core-core repulsion = 20872.475382 eV
Total energy + Delta-G solvation = -4075.205437 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.089 amu
Computer time = 1.73 seconds
Orbital eigenvalues (eV)
-49.50698 -47.48848 -40.24821 -37.76432 -36.53222 -36.01859 -33.24549 -31.41009
-30.35153 -29.73522 -26.68927 -26.17353 -24.44173 -23.09499 -22.64418 -21.44728
-19.10978 -18.93420 -18.23374 -18.05369 -16.79588 -16.34920 -15.98340 -15.32354
-14.95291 -14.74151 -14.21853 -14.15618 -13.97125 -13.83204 -13.66286 -13.41223
-13.25319 -12.99308 -12.93118 -12.70286 -12.17322 -12.03409 -11.64038 -11.58776
-11.19361 -11.07623 -10.93407 -10.85513 -10.66214 -10.37926 -10.09951 -9.72483
-9.38121 -9.01127 -8.77897 -8.47475 -8.29381 -7.24839 -6.02279 -4.07646
1.08622 1.17861 2.09597 2.47118 3.29968 3.30769 3.35130 3.37651
3.49203 4.15887 4.39767 4.48944 4.60970 4.66243 5.01314 5.10175
5.28735 5.41224 5.55687 5.63594 5.80130 5.99737 6.07161 6.20171
6.30705 6.52508 6.57848 6.69934 6.86905 6.90136 7.24405 7.29809
7.49630 7.74965 7.78616 7.84088 8.26158 8.37524 8.64954 9.00939
9.56930 11.03582
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.012110 B = 0.004263 C = 0.003373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2311.612273 B = 6567.020318 C = 8299.145494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.102 4.102
3 C 0.217 3.783
4 H 0.001 0.999
5 C -0.512 4.512
6 H 0.058 0.942
7 C 0.065 3.935
8 N -0.889 5.889
9 Si 0.893 3.107
10 H -0.277 1.277
11 H -0.288 1.288
12 H -0.279 1.279
13 N -0.677 5.677
14 C 0.102 3.898
15 C -0.063 4.063
16 C -0.063 4.063
17 C -0.058 4.058
18 Cl -0.075 7.075
19 C -0.083 4.083
20 C -0.181 4.181
21 C 0.115 3.885
22 O -0.308 6.308
23 C 0.410 3.590
24 F -0.202 7.202
25 F -0.198 7.198
26 H 0.013 0.987
27 H 0.055 0.945
28 H 0.043 0.957
29 H 0.009 0.991
30 H 0.086 0.914
31 H 0.261 0.739
32 H 0.333 0.667
33 H 0.036 0.964
34 H 0.076 0.924
35 H 0.143 0.857
36 H 0.135 0.865
37 H 0.138 0.862
38 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.052 7.770 -15.745 17.558
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.141 4.141
3 C 0.110 3.890
4 H 0.019 0.981
5 C -0.550 4.550
6 H 0.076 0.924
7 C -0.137 4.137
8 N -0.527 5.527
9 Si 0.721 3.279
10 H -0.202 1.202
11 H -0.214 1.214
12 H -0.204 1.204
13 N -0.309 5.309
14 C -0.028 4.028
15 C -0.064 4.064
16 C -0.082 4.082
17 C -0.084 4.084
18 Cl -0.046 7.046
19 C -0.102 4.102
20 C -0.199 4.199
21 C 0.071 3.929
22 O -0.225 6.225
23 C 0.320 3.680
24 F -0.184 7.184
25 F -0.180 7.180
26 H 0.032 0.968
27 H 0.074 0.926
28 H 0.062 0.938
29 H 0.028 0.972
30 H 0.105 0.895
31 H 0.071 0.929
32 H 0.151 0.849
33 H 0.054 0.946
34 H 0.095 0.905
35 H 0.161 0.839
36 H 0.152 0.848
37 H 0.156 0.844
38 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -0.382 7.003 -15.711 17.205
hybrid contribution 0.204 1.167 0.738 1.395
sum -0.178 8.169 -14.974 17.058
Atomic orbital electron populations
1.21447 0.97498 0.97300 1.01468 1.21439 0.95061 0.98199 0.99406
1.19139 0.93087 0.91486 0.85330 0.98097 1.21125 1.31672 1.11962
0.90287 0.92410 1.24865 0.95039 0.94999 0.98835 1.69870 1.36766
1.22739 1.23364 0.86644 0.79317 0.79629 0.82301 1.20218 1.21364
1.20429 1.60765 1.47632 1.16446 1.06026 1.20764 0.93942 0.99763
0.88325 1.19412 0.99885 0.89415 0.97726 1.20826 0.95360 1.00815
0.91174 1.20812 1.02358 0.91629 0.93637 1.98355 1.77750 1.68940
1.59561 1.20711 0.98680 0.91266 0.99535 1.21391 1.02801 1.00923
0.94815 1.18780 0.94551 0.90565 0.89022 1.86729 1.72243 1.17489
1.45999 1.23434 0.78006 0.81280 0.85269 1.93084 1.80239 1.94895
1.50163 1.93101 1.41671 1.86630 1.96574 0.96823 0.92613 0.93839
0.97191 0.89526 0.92907 0.84939 0.94553 0.90521 0.83882 0.84752
0.84401 0.80102
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16
2 C -0.10 -2.43 5.58 -26.73 -0.15 -2.58 16
3 C 0.22 5.24 2.30 -68.86 -0.16 5.08 16
4 H 0.00 0.04 7.84 -51.93 -0.41 -0.37 16
5 C -0.51 -13.43 7.27 -34.44 -0.25 -13.68 16
6 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16
7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16
8 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16
9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16
10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16
12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
13 N -0.68 -13.92 5.55 -109.22 -0.61 -14.52 16
14 C 0.10 1.78 5.25 -4.98 -0.03 1.76 16
15 C -0.06 -0.97 5.45 -104.48 -0.57 -1.54 16
16 C -0.06 -0.88 9.45 -39.57 -0.37 -1.25 16
17 C -0.06 -0.74 6.32 -39.49 -0.25 -0.99 16
18 Cl -0.07 -0.88 28.95 -51.86 -1.50 -2.38 16
19 C -0.08 -1.00 9.82 -39.57 -0.39 -1.39 16
20 C -0.18 -2.31 8.26 -39.44 -0.33 -2.64 16
21 C 0.11 1.66 6.46 -39.22 -0.25 1.41 16
22 O -0.31 -4.20 9.63 -19.48 -0.19 -4.39 16
23 C 0.41 4.09 5.98 101.05 0.60 4.69 16
24 F -0.20 -2.12 15.58 2.25 0.04 -2.09 16
25 F -0.20 -2.24 15.59 2.25 0.04 -2.20 16
26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
27 H 0.05 1.34 7.12 -51.93 -0.37 0.97 16
28 H 0.04 0.93 7.69 -51.93 -0.40 0.53 16
29 H 0.01 0.21 7.46 -51.93 -0.39 -0.18 16
30 H 0.09 2.29 6.08 -51.93 -0.32 1.98 16
31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
32 H 0.33 6.92 8.21 -39.29 -0.32 6.60 16
33 H 0.04 0.65 7.85 -51.93 -0.41 0.25 16
34 H 0.08 1.33 7.27 -51.93 -0.38 0.96 16
35 H 0.14 1.90 8.03 -52.49 -0.42 1.48 16
36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16
37 H 0.14 1.60 5.10 -52.49 -0.27 1.33 16
38 H 0.18 1.03 8.14 -51.93 -0.42 0.61 16
LS Contribution 337.34 15.07 5.08 5.08
Total: -1.00 -28.39 337.34 -7.90 -36.29
By element:
Atomic # 1 Polarization: 8.76 SS G_CDS: -4.48 Total: 4.28 kcal
Atomic # 6 Polarization: -9.95 SS G_CDS: -1.88 Total: -11.83 kcal
Atomic # 7 Polarization: -38.58 SS G_CDS: 0.02 Total: -38.56 kcal
Atomic # 8 Polarization: -4.20 SS G_CDS: -0.19 Total: -4.39 kcal
Atomic # 9 Polarization: -4.36 SS G_CDS: 0.07 Total: -4.29 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -28.39 -7.90 -36.29 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054183582.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.183 kcal
(2) G-P(sol) polarization free energy of solvation -28.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.575 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.470 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.74 seconds