Wall clock time and date at job start Tue Mar 31 2020 12:33:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53003 * 109.47423 * 2 1
4 4 H 1.08999 * 109.47317 * 179.71841 * 3 2 1
5 5 C 1.50699 * 109.47053 * 59.71487 * 3 2 1
6 6 H 1.08001 * 119.99605 * 240.00123 * 5 3 2
7 7 C 1.37874 * 120.00240 * 60.00288 * 5 3 2
8 8 N 1.31517 * 120.00004 * 359.97438 * 7 5 3
9 9 Si 1.86795 * 120.00094 * 179.97438 * 7 5 3
10 10 H 1.48498 * 109.47206 * 60.00040 * 9 7 5
11 11 H 1.48504 * 109.47246 * 180.02562 * 9 7 5
12 12 H 1.48497 * 109.47296 * 300.00031 * 9 7 5
13 13 N 1.46909 * 109.46536 * 299.71498 * 3 2 1
14 14 C 1.46891 * 110.99638 * 273.74868 * 13 3 2
15 15 C 1.50705 * 109.46819 * 174.46169 * 14 13 3
16 16 C 1.38159 * 120.02529 * 259.72814 * 15 14 13
17 17 C 1.38346 * 120.04511 * 179.72193 * 16 15 14
18 18 Cl 1.73603 * 119.95850 * 180.28008 * 17 16 15
19 19 C 1.38387 * 120.08276 * 0.55089 * 17 16 15
20 20 C 1.38118 * 120.04192 * 359.72259 * 19 17 16
21 21 C 1.38708 * 120.01827 * 80.00145 * 15 14 13
22 22 O 1.35918 * 120.04213 * 0.02562 * 21 15 14
23 23 C 1.42901 * 116.99777 * 180.02562 * 22 21 15
24 24 F 1.39901 * 109.47445 * 300.00299 * 23 22 21
25 25 F 1.39902 * 109.47226 * 60.00224 * 23 22 21
26 26 H 1.09001 * 109.47395 * 182.34716 * 1 2 3
27 27 H 1.08995 * 109.47348 * 302.35462 * 1 2 3
28 28 H 1.09005 * 109.46498 * 62.35374 * 1 2 3
29 29 H 1.08997 * 109.47621 * 239.99405 * 2 1 3
30 30 H 1.09001 * 109.46921 * 119.99591 * 2 1 3
31 31 H 0.96994 * 120.00027 * 180.02562 * 8 7 5
32 32 H 1.00901 * 110.99281 * 149.79950 * 13 3 2
33 33 H 1.08993 * 109.47535 * 294.46000 * 14 13 3
34 34 H 1.08998 * 109.47305 * 54.46991 * 14 13 3
35 35 H 1.08002 * 119.97736 * 359.97438 * 16 15 14
36 36 H 1.07998 * 119.98058 * 179.70577 * 19 17 16
37 37 H 1.07998 * 120.02246 * 179.97438 * 20 19 17
38 38 H 1.09001 * 109.46910 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1300 1.4425 0.0051
5 6 1.5320 2.1550 1.2269
6 1 0.9116 3.0329 1.1234
7 6 1.8592 1.6860 2.4815
8 7 2.6143 0.6166 2.6075
9 14 1.2300 2.5696 4.0023
10 1 -0.2550 2.5702 3.9955
11 1 1.7197 1.8719 5.2183
12 1 1.7255 3.9694 4.0020
13 7 1.5559 2.1329 -1.2030
14 6 2.4609 1.9093 -2.3382
15 6 1.8651 2.5159 -3.5825
16 6 1.2157 1.7130 -4.5003
17 6 0.6636 2.2702 -5.6399
18 17 -0.1582 1.2603 -6.7881
19 6 0.7705 3.6309 -5.8684
20 6 1.4239 4.4361 -4.9560
21 6 1.9733 3.8800 -3.8098
22 8 2.6171 4.6706 -2.9110
23 6 2.6898 6.0661 -3.2098
24 9 3.3638 6.2491 -4.4220
25 9 1.3963 6.5893 -3.3118
26 1 -0.3634 -1.0268 0.0421
27 1 -0.3634 0.5499 0.8681
28 1 -0.3632 0.4769 -0.9104
29 1 1.8934 -0.5139 -0.8899
30 1 1.8933 -0.5138 0.8900
31 1 2.8441 0.2865 3.4901
32 1 1.4315 3.1189 -1.0285
33 1 3.4243 2.3755 -2.1323
34 1 2.5996 0.8385 -2.4868
35 1 1.1354 0.6501 -4.3261
36 1 0.3430 4.0635 -6.7609
37 1 1.5075 5.4979 -5.1349
38 1 3.2283 6.5805 -2.4138
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000054183582.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:33:55
Heat of formation + Delta-G solvation = -149.197509 kcal
Electronic energy + Delta-G solvation = -24948.362824 eV
Core-core repulsion = 20872.475382 eV
Total energy + Delta-G solvation = -4075.887442 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.089 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-50.32548 -48.31028 -41.29329 -38.77154 -38.08611 -37.18465 -34.88197 -33.14396
-31.66166 -31.00107 -28.41239 -27.09478 -25.99831 -24.92678 -23.65641 -22.62045
-20.90319 -19.97160 -19.11906 -18.89421 -18.46267 -17.35787 -17.32128 -16.78510
-16.32559 -15.90046 -15.69969 -15.34801 -15.21705 -14.95128 -14.87548 -14.64604
-14.43144 -14.14540 -13.98947 -13.96293 -13.84588 -13.48655 -13.05694 -12.86853
-12.75636 -12.63743 -12.40916 -12.28477 -12.06986 -11.92164 -11.80008 -11.52294
-11.27231 -10.78264 -10.50468 -10.07369 -9.35510 -8.96440 -8.06367 -6.18163
0.04542 0.12203 1.11166 1.44586 1.46251 1.53060 1.61084 2.40978
2.47335 2.51546 3.22577 3.43649 3.57216 3.65905 3.69524 3.89855
3.99419 4.12277 4.34912 4.38390 4.65929 4.71394 4.80973 4.84296
4.95058 4.99930 5.02740 5.17715 5.33936 5.41719 5.46080 5.59156
5.74170 5.85109 5.88637 5.92153 6.31539 6.51076 6.80305 7.04552
7.50228 8.98400
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.012110 B = 0.004263 C = 0.003373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2311.612273 B = 6567.020318 C = 8299.145494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.099 4.099
3 C 0.223 3.777
4 H -0.033 1.033
5 C -0.522 4.522
6 H 0.055 0.945
7 C 0.020 3.980
8 N -0.916 5.916
9 Si 0.952 3.048
10 H -0.274 1.274
11 H -0.287 1.287
12 H -0.271 1.271
13 N -0.672 5.672
14 C 0.110 3.890
15 C -0.084 4.084
16 C -0.066 4.066
17 C -0.063 4.063
18 Cl -0.063 7.063
19 C -0.073 4.073
20 C -0.182 4.182
21 C 0.108 3.892
22 O -0.327 6.327
23 C 0.407 3.593
24 F -0.205 7.205
25 F -0.206 7.206
26 H 0.032 0.968
27 H 0.033 0.967
28 H 0.051 0.949
29 H 0.022 0.978
30 H 0.058 0.942
31 H 0.260 0.740
32 H 0.331 0.669
33 H 0.028 0.972
34 H 0.074 0.926
35 H 0.146 0.854
36 H 0.162 0.838
37 H 0.151 0.849
38 H 0.226 0.774
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.940 8.892 -16.801 19.032
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.137 4.137
3 C 0.115 3.885
4 H -0.015 1.015
5 C -0.560 4.560
6 H 0.073 0.927
7 C -0.180 4.180
8 N -0.555 5.555
9 Si 0.778 3.222
10 H -0.199 1.199
11 H -0.213 1.213
12 H -0.196 1.196
13 N -0.302 5.302
14 C -0.020 4.020
15 C -0.086 4.086
16 C -0.085 4.085
17 C -0.090 4.090
18 Cl -0.034 7.034
19 C -0.092 4.092
20 C -0.201 4.201
21 C 0.064 3.936
22 O -0.245 6.245
23 C 0.318 3.682
24 F -0.187 7.187
25 F -0.187 7.187
26 H 0.051 0.949
27 H 0.052 0.948
28 H 0.070 0.930
29 H 0.041 0.959
30 H 0.077 0.923
31 H 0.069 0.931
32 H 0.148 0.852
33 H 0.046 0.954
34 H 0.092 0.908
35 H 0.164 0.836
36 H 0.179 0.821
37 H 0.168 0.832
38 H 0.242 0.758
Dipole moment (debyes) X Y Z Total
from point charges -1.274 8.137 -16.789 18.701
hybrid contribution 0.494 0.840 0.958 1.367
sum -0.780 8.977 -15.832 18.217
Atomic orbital electron populations
1.21300 0.96135 0.98251 1.00747 1.21320 0.96142 0.97671 0.98605
1.18921 0.90957 0.92142 0.86457 1.01519 1.21380 1.31410 1.11943
0.91303 0.92676 1.25572 0.95241 0.95635 1.01509 1.70006 1.37781
1.23930 1.23781 0.85707 0.78727 0.78792 0.78963 1.19928 1.21270
1.19641 1.60686 1.48160 1.15971 1.05373 1.20639 0.93240 0.99742
0.88343 1.19194 1.01780 0.90260 0.97338 1.20884 0.95193 1.00948
0.91454 1.20857 1.02353 0.92203 0.93543 1.98360 1.77413 1.68699
1.58910 1.21048 0.97363 0.90844 0.99949 1.21562 1.02549 1.01635
0.94334 1.18919 0.94584 0.90454 0.89643 1.86715 1.72152 1.19237
1.46388 1.24149 0.77934 0.79909 0.86238 1.93073 1.80188 1.94740
1.50664 1.93081 1.42499 1.86518 1.96649 0.94905 0.94790 0.93020
0.95898 0.92349 0.93054 0.85154 0.95432 0.90770 0.83612 0.82077
0.83190 0.75828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.71 9.52 71.98 0.69 -4.03 16
2 C -0.10 -4.74 5.58 30.59 0.17 -4.56 16
3 C 0.22 11.02 2.30 44.17 0.10 11.12 16
4 H -0.03 -1.81 7.84 -2.39 -0.02 -1.83 16
5 C -0.52 -27.68 7.27 25.60 0.19 -27.49 16
6 H 0.06 2.89 7.60 -2.91 -0.02 2.87 16
7 C 0.02 1.06 5.30 84.65 0.45 1.51 16
8 N -0.92 -51.70 11.32 21.45 0.24 -51.46 16
9 Si 0.95 42.73 29.54 68.60 2.03 44.75 16
10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16
12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16
13 N -0.67 -27.81 5.55 -499.47 -2.77 -30.59 16
14 C 0.11 3.89 5.25 85.56 0.45 4.34 16
15 C -0.08 -2.56 5.45 -19.77 -0.11 -2.67 16
16 C -0.07 -1.78 9.45 22.28 0.21 -1.57 16
17 C -0.06 -1.50 6.32 22.33 0.14 -1.36 16
18 Cl -0.06 -1.34 28.95 -2.72 -0.08 -1.42 16
19 C -0.07 -1.59 9.82 22.28 0.22 -1.37 16
20 C -0.18 -4.33 8.26 22.36 0.18 -4.15 16
21 C 0.11 3.03 6.46 22.50 0.15 3.17 16
22 O -0.33 -8.68 9.63 -92.62 -0.89 -9.58 16
23 C 0.41 7.40 5.98 113.37 0.68 8.08 16
24 F -0.20 -3.95 15.58 44.97 0.70 -3.25 16
25 F -0.21 -4.30 15.59 44.97 0.70 -3.60 16
26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16
27 H 0.03 1.61 7.12 -2.39 -0.02 1.60 16
28 H 0.05 2.16 7.69 -2.38 -0.02 2.14 16
29 H 0.02 1.00 7.46 -2.39 -0.02 0.98 16
30 H 0.06 3.15 6.08 -2.39 -0.01 3.14 16
31 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16
32 H 0.33 13.88 8.21 -89.69 -0.74 13.14 16
33 H 0.03 1.02 7.85 -2.39 -0.02 1.00 16
34 H 0.07 2.62 7.27 -2.39 -0.02 2.60 16
35 H 0.15 3.77 8.03 -2.91 -0.02 3.74 16
36 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16
37 H 0.15 3.16 5.10 -2.91 -0.01 3.15 16
38 H 0.23 1.99 8.14 -2.39 -0.02 1.97 16
Total: -1.00 -60.75 337.34 3.81 -56.95
By element:
Atomic # 1 Polarization: 16.80 SS G_CDS: 0.37 Total: 17.16 kcal
Atomic # 6 Polarization: -22.49 SS G_CDS: 3.51 Total: -18.97 kcal
Atomic # 7 Polarization: -79.51 SS G_CDS: -2.53 Total: -82.05 kcal
Atomic # 8 Polarization: -8.68 SS G_CDS: -0.89 Total: -9.58 kcal
Atomic # 9 Polarization: -8.25 SS G_CDS: 1.40 Total: -6.85 kcal
Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal
Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal
Total: -60.75 3.81 -56.95 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054183582.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.251 kcal
(2) G-P(sol) polarization free energy of solvation -60.752 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.003 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.947 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.198 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds