Wall clock time and date at job start Tue Mar 31 2020 12:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36207 * 120.85406 * 2 1 4 4 C 1.40267 * 119.88379 * 179.97438 * 3 2 1 5 5 S 1.76193 * 119.23818 * 179.97438 * 4 3 2 6 6 C 1.81002 * 100.00049 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.47152 * 179.97438 * 8 7 6 10 10 C 1.76198 * 100.00092 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99945 * 359.97438 * 10 9 8 12 12 C 1.38802 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00450 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 119.99698 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46777 * 90.00197 * 14 12 10 16 16 H 1.48501 * 109.46807 * 210.00417 * 14 12 10 17 17 H 1.48504 * 109.46961 * 330.00465 * 14 12 10 18 18 N 1.31818 * 121.52132 * 0.25702 * 4 3 2 19 19 C 1.33770 * 121.23389 * 359.48526 * 18 4 3 20 20 C 1.40543 * 120.96478 * 180.25808 * 19 18 4 21 21 C 1.36143 * 119.75681 * 180.24702 * 20 19 18 22 22 C 1.39283 * 121.03051 * 0.02562 * 21 20 19 23 23 C 1.36219 * 120.85085 * 359.97438 * 22 21 20 24 24 C 1.40327 * 119.64978 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47103 * 89.99629 * 1 2 3 26 26 H 1.09001 * 109.47246 * 210.00292 * 1 2 3 27 27 H 1.09006 * 109.46572 * 330.00152 * 1 2 3 28 28 H 1.08001 * 120.05702 * 359.95603 * 3 2 1 29 29 H 1.09002 * 109.47115 * 60.00094 * 6 5 4 30 30 H 1.09001 * 109.46925 * 300.00251 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99731 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99903 * 7 6 5 33 33 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 34 34 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 35 35 H 0.96996 * 120.00276 * 179.97438 * 13 12 10 36 36 H 1.07998 * 120.12622 * 0.22555 * 20 19 18 37 37 H 1.07998 * 119.48351 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.57516 * 179.97438 * 22 21 20 39 39 H 1.08008 * 120.17588 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.1693 0.0000 4 6 3.6081 1.1456 0.0005 5 16 4.4946 2.6682 -0.0002 6 6 6.1932 2.0430 0.0001 7 6 7.1700 3.2205 0.0002 8 6 8.6059 2.6920 -0.0002 9 16 9.7616 4.0850 -0.0008 10 6 11.2924 3.2126 -0.0005 11 1 11.2984 2.1326 0.0004 12 6 12.4906 3.9132 -0.0003 13 7 13.6342 3.2615 -0.0005 14 14 12.4801 5.7813 -0.0011 15 1 12.4768 6.2768 1.3987 16 1 13.6901 6.2827 -0.7009 17 1 11.2651 6.2691 -0.7018 18 7 4.2781 0.0104 -0.0040 19 6 3.6457 -1.1684 0.0010 20 6 4.3658 -2.3753 0.0016 21 6 3.6970 -3.5612 0.0016 22 6 2.3047 -3.6003 0.0005 23 6 1.5736 -2.4509 -0.0001 24 6 2.2301 -1.2106 0.0010 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6805 2.1131 -0.0007 29 1 6.3566 1.4349 -0.8896 30 1 6.3566 1.4356 0.8904 31 1 7.0067 3.8282 -0.8898 32 1 7.0065 3.8283 0.8901 33 1 8.7695 2.0841 0.8897 34 1 8.7692 2.0844 -0.8903 35 1 14.4715 3.7512 -0.0007 36 1 5.4457 -2.3622 0.0016 37 1 4.2548 -4.4860 0.0016 38 1 1.7983 -4.5542 0.0001 39 1 0.4944 -2.4939 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080708765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:03 Heat of formation + Delta-G solvation = 27.480590 kcal Electronic energy + Delta-G solvation = -20078.639108 eV Core-core repulsion = 17009.439110 eV Total energy + Delta-G solvation = -3069.199998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09244 -37.34315 -35.06635 -34.39680 -32.43513 -30.90596 -30.65142 -28.29807 -27.08974 -25.62192 -24.39794 -23.84745 -21.51536 -21.37762 -18.56738 -17.88434 -17.48548 -17.16069 -15.83186 -15.42133 -15.05528 -14.98589 -14.92775 -14.55036 -14.48015 -14.05067 -13.69564 -13.53685 -13.30774 -12.87249 -12.80363 -12.58213 -12.21509 -12.17017 -12.00606 -11.85236 -11.49929 -11.17206 -11.05841 -10.64942 -10.54234 -10.49917 -10.16401 -9.80812 -9.75477 -9.52346 -9.00335 -8.61337 -8.57782 -7.66346 -6.95007 -6.27906 -4.00630 0.06643 0.49691 1.36689 1.68453 2.11992 2.53875 3.01790 3.30737 3.45915 3.58185 3.77723 4.06621 4.20617 4.31942 4.42062 4.50914 4.63437 4.78518 4.81694 4.87065 5.02637 5.06873 5.09505 5.11284 5.11820 5.20156 5.32020 5.47755 5.50046 5.65830 5.71301 5.72093 5.73872 5.90786 6.06754 6.13666 6.15557 6.18640 6.36605 6.53129 6.57644 7.51199 7.95841 8.45174 9.17745 10.81546 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.002317 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.871035 B =12080.105463 C =13230.925380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.013 4.013 3 C -0.158 4.158 4 C 0.157 3.843 5 S -0.062 6.062 6 C -0.088 4.088 7 C -0.091 4.091 8 C -0.077 4.077 9 S -0.213 6.213 10 C -0.502 4.502 11 H 0.089 0.911 12 C 0.091 3.909 13 N -0.881 5.881 14 Si 0.861 3.139 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.237 1.237 18 N -0.485 5.485 19 C 0.148 3.852 20 C -0.096 4.096 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.093 4.093 24 C -0.111 4.111 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.270 0.730 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.327 -10.540 -0.097 31.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.023 4.023 3 C -0.182 4.182 4 C -0.106 4.106 5 S 0.180 5.820 6 C -0.239 4.239 7 C -0.131 4.131 8 C -0.227 4.227 9 S 0.015 5.985 10 C -0.649 4.649 11 H 0.107 0.893 12 C -0.117 4.117 13 N -0.518 5.518 14 Si 0.686 3.314 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.161 1.161 18 N -0.200 5.200 19 C 0.024 3.976 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.143 4.143 23 C -0.112 4.112 24 C -0.115 4.115 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -28.706 -8.241 -0.107 29.866 hybrid contribution 0.201 -1.937 0.032 1.947 sum -28.505 -10.178 -0.075 30.267 Atomic orbital electron populations 1.20880 0.89661 1.03706 1.03254 1.20051 0.96552 0.91752 0.93911 1.21295 0.92903 0.99290 1.04699 1.23365 0.93686 0.97203 0.96316 1.85790 1.02842 1.03537 1.89852 1.23602 0.91363 1.01785 1.07117 1.21178 0.92238 0.95833 1.03832 1.23018 0.94754 1.00842 1.04118 1.84154 1.03167 1.13653 1.97553 1.22113 0.88604 0.95814 1.58414 0.89345 1.24798 0.94394 0.99144 0.93348 1.69933 0.97346 1.36291 1.48253 0.86671 0.79741 0.85224 0.79723 1.19348 1.20092 1.16139 1.68492 1.38184 0.96809 1.16492 1.18835 0.89744 0.92054 0.97005 1.20841 1.00649 0.90089 0.99945 1.20930 0.94483 0.98015 0.98349 1.20907 0.94153 0.98461 1.00735 1.20977 0.99906 0.91204 0.99127 1.18657 0.93893 0.94163 1.04795 0.90042 0.90630 0.90483 0.84142 0.88708 0.88726 0.90535 0.90541 0.91120 0.91077 0.91962 0.84579 0.85238 0.85587 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.59 36.01 0.35 -0.29 16 2 C -0.01 -0.12 5.91 -104.30 -0.62 -0.74 16 3 C -0.16 -1.65 9.42 -39.55 -0.37 -2.02 16 4 C 0.16 2.02 6.98 -16.80 -0.12 1.91 16 5 S -0.06 -0.79 22.04 -107.50 -2.37 -3.16 16 6 C -0.09 -1.23 4.81 37.16 0.18 -1.06 16 7 C -0.09 -1.42 5.22 -26.73 -0.14 -1.56 16 8 C -0.08 -1.51 5.67 37.16 0.21 -1.29 16 9 S -0.21 -5.22 19.41 -107.50 -2.09 -7.31 16 10 C -0.50 -14.66 10.04 30.94 0.31 -14.35 16 11 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 12 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 13 N -0.88 -26.91 13.97 55.49 0.78 -26.14 16 14 Si 0.86 21.66 27.74 -169.99 -4.72 16.94 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 18 N -0.49 -6.79 9.05 -9.81 -0.09 -6.88 16 19 C 0.15 1.87 6.60 -84.86 -0.56 1.31 16 20 C -0.10 -1.04 9.98 -39.47 -0.39 -1.43 16 21 C -0.10 -0.81 9.94 -39.95 -0.40 -1.21 16 22 C -0.12 -0.91 9.96 -39.92 -0.40 -1.31 16 23 C -0.09 -0.75 9.31 -39.52 -0.37 -1.11 16 24 C -0.11 -1.17 5.74 -106.77 -0.61 -1.78 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.32 6.51 -51.93 -0.34 -0.02 16 27 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.09 1.35 8.11 -51.92 -0.42 0.93 16 30 H 0.09 1.35 8.11 -51.92 -0.42 0.93 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 34 H 0.07 1.39 8.14 -51.91 -0.42 0.97 16 35 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.13 0.68 6.43 -52.48 -0.34 0.34 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -32.72 354.39 -11.49 -44.21 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.32 Total: -0.67 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -3.03 Total: -22.35 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.69 Total: -33.02 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.72 Total: 16.94 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -4.46 Total: -10.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.72 -11.49 -44.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080708765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.694 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds