Wall clock time and date at job start Tue Mar 31 2020 13:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99425 * 2 1 4 4 H 1.48494 * 109.47306 * 270.00061 * 3 2 1 5 5 H 1.48499 * 109.47490 * 30.00261 * 3 2 1 6 6 H 1.48501 * 109.46915 * 150.00404 * 3 2 1 7 7 C 1.38720 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99749 * 359.97438 * 7 2 1 9 9 O 1.34778 * 119.99599 * 180.02562 * 7 2 1 10 10 C 1.35571 * 116.99881 * 185.05753 * 9 7 2 11 11 C 1.39186 * 119.89673 * 354.43855 * 10 9 7 12 12 C 1.37592 * 120.09868 * 180.02562 * 11 10 9 13 13 C 1.40020 * 119.90182 * 359.97438 * 12 11 10 14 14 C 1.46967 * 120.10166 * 179.97438 * 13 12 11 15 15 C 1.35024 * 119.99814 * 179.97438 * 14 13 12 16 16 C 1.46254 * 119.99740 * 179.97438 * 15 14 13 17 17 O 1.21724 * 119.99838 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00085 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00253 * 180.02562 * 18 16 15 20 20 H 1.08998 * 109.95997 * 326.24655 * 19 18 16 21 21 C 1.53862 * 109.97320 * 204.99896 * 19 18 16 22 22 C 1.54276 * 108.92015 * 193.38122 * 21 19 18 23 23 S 1.83089 * 104.65102 * 27.95755 * 22 21 19 24 24 C 1.55134 * 109.97500 * 87.53425 * 19 18 16 25 25 C 1.40027 * 119.80047 * 0.25916 * 13 12 11 26 26 C 1.37599 * 119.89320 * 359.48475 * 25 13 12 27 27 H 0.96990 * 120.00221 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.94875 * 0.02562 * 11 10 9 29 29 H 1.08010 * 120.04843 * 179.97438 * 12 11 10 30 30 H 1.07998 * 119.99879 * 0.02562 * 14 13 12 31 31 H 1.07998 * 120.00306 * 0.02562 * 15 14 13 32 32 H 0.97003 * 119.99977 * 359.97438 * 18 16 15 33 33 H 1.08997 * 109.60572 * 73.46674 * 21 19 18 34 34 H 1.08996 * 109.46343 * 313.21439 * 21 19 18 35 35 H 1.08997 * 110.40293 * 269.15694 * 22 21 19 36 36 H 1.09004 * 110.39933 * 146.74675 * 22 21 19 37 37 H 1.08998 * 110.85838 * 43.30096 * 24 19 18 38 38 H 1.09007 * 110.85630 * 279.65874 * 24 19 18 39 39 H 1.07995 * 120.05411 * 179.74714 * 25 13 12 40 40 H 1.07994 * 119.94956 * 180.23616 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0088 -1.2013 -0.0005 8 1 1.4688 -2.1366 -0.0005 9 8 3.3566 -1.2012 0.0000 10 6 3.9722 -2.4043 -0.1071 11 6 3.2171 -3.5735 -0.0942 12 6 3.8377 -4.7968 -0.2021 13 6 5.2308 -4.8644 -0.3254 14 6 5.8982 -6.1687 -0.4404 15 6 7.2417 -6.2314 -0.5597 16 6 7.9059 -7.5295 -0.6735 17 8 7.2475 -8.5532 -0.6611 18 7 9.2469 -7.5921 -0.7922 19 6 9.9123 -8.8923 -0.9067 20 1 9.3748 -9.6382 -0.3211 21 6 11.3657 -8.7842 -0.4136 22 6 12.1371 -10.0472 -0.8495 23 16 11.2873 -10.6065 -2.3717 24 6 9.9720 -9.3278 -2.3945 25 6 5.9867 -3.6857 -0.3330 26 6 5.3571 -2.4666 -0.2299 27 1 -0.4850 0.8399 0.0004 28 1 2.1426 -3.5205 0.0005 29 1 3.2510 -5.7037 -0.1916 30 1 5.3140 -7.0770 -0.4301 31 1 7.8259 -5.3231 -0.5704 32 1 9.7716 -6.7763 -0.8025 33 1 11.3782 -8.7049 0.6734 34 1 11.8326 -7.9014 -0.8502 35 1 12.0777 -10.8142 -0.0774 36 1 13.1774 -9.8020 -1.0635 37 1 10.2555 -8.4909 -3.0328 38 1 9.0208 -9.7549 -2.7124 39 1 7.0618 -3.7333 -0.4238 40 1 5.9389 -1.5568 -0.2394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081026421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:30 Heat of formation + Delta-G solvation = -26.802553 kcal Electronic energy + Delta-G solvation = -22365.312284 eV Core-core repulsion = 18851.005522 eV Total energy + Delta-G solvation = -3514.306763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96151 -39.35984 -37.27689 -36.76686 -33.37347 -33.03589 -32.48129 -30.57627 -29.66916 -28.36766 -25.83797 -25.16726 -23.25766 -22.34122 -21.39111 -20.84784 -19.39319 -18.15368 -17.54794 -17.31552 -17.15735 -16.33200 -15.60822 -15.08128 -15.03681 -14.66433 -14.28103 -14.17697 -14.07882 -14.01304 -13.76664 -13.15280 -13.05735 -12.88019 -12.67196 -12.44354 -12.42618 -12.14124 -11.93067 -11.85872 -11.44614 -11.24461 -11.05283 -10.80809 -10.60983 -10.31037 -9.95321 -9.72244 -9.58780 -9.37910 -8.95876 -8.51399 -8.09945 -7.29365 -6.63720 -4.27467 0.90761 1.33931 1.88967 1.99428 2.40228 3.02048 3.09182 3.13229 3.26114 3.40067 4.05575 4.05761 4.20719 4.34389 4.38760 4.52681 4.58900 4.67828 4.87140 4.90545 5.10018 5.10366 5.12722 5.18930 5.38116 5.40202 5.44528 5.54031 5.57348 5.89770 5.96928 6.11256 6.25520 6.34616 6.47708 6.62739 6.87967 7.04550 7.10918 7.33666 7.37719 7.59107 7.80481 8.14922 8.69319 9.29201 10.42399 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.042337 B = 0.001811 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.206774 B =15455.990861 C =15841.188057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.111 0.889 9 O -0.201 6.201 10 C 0.174 3.826 11 C -0.230 4.230 12 C -0.036 4.036 13 C -0.192 4.192 14 C 0.041 3.959 15 C -0.282 4.282 16 C 0.558 3.442 17 O -0.552 6.552 18 N -0.726 5.726 19 C 0.142 3.858 20 H 0.106 0.894 21 C -0.138 4.138 22 C -0.071 4.071 23 S -0.287 6.287 24 C -0.082 4.082 25 C -0.044 4.044 26 C -0.200 4.200 27 H 0.284 0.716 28 H 0.138 0.862 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.402 0.598 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.440 -13.235 -0.946 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.128 0.872 9 O -0.104 6.104 10 C 0.119 3.881 11 C -0.249 4.249 12 C -0.054 4.054 13 C -0.193 4.193 14 C 0.021 3.979 15 C -0.303 4.303 16 C 0.350 3.650 17 O -0.432 6.432 18 N -0.378 5.378 19 C 0.035 3.965 20 H 0.124 0.876 21 C -0.177 4.177 22 C -0.220 4.220 23 S -0.062 6.062 24 C -0.232 4.232 25 C -0.062 4.062 26 C -0.219 4.219 27 H 0.094 0.906 28 H 0.155 0.845 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.237 0.763 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 21.045 -14.469 -1.641 25.592 hybrid contribution 0.159 2.037 0.684 2.155 sum 21.204 -12.432 -0.957 24.599 Atomic orbital electron populations 1.69613 1.05707 1.29042 1.45730 1.24549 0.95092 0.99126 0.95177 0.86152 0.80367 0.81069 0.79212 1.19614 1.20487 1.18206 1.20883 0.76612 0.96948 1.52242 0.87159 1.83502 1.22993 1.26239 1.77643 1.19372 0.91763 0.85353 0.91604 1.21226 1.01402 0.91672 1.10611 1.21049 0.93064 0.97093 0.94194 1.18515 0.93397 0.91972 1.15431 1.22325 0.93931 0.96379 0.85282 1.22404 0.95895 0.95587 1.16437 1.18468 0.81363 0.90129 0.75030 1.90801 1.64596 1.36763 1.51028 1.45816 1.07411 1.08122 1.76425 1.22006 0.93030 0.87431 0.94062 0.87641 1.22497 0.93739 0.98185 1.03290 1.23876 1.01658 0.99559 0.96859 1.87753 1.36901 1.44680 1.36859 1.24755 0.99699 0.98939 0.99788 1.20876 0.98485 0.91064 0.95818 1.20146 0.91817 0.98036 1.11917 0.90609 0.84471 0.86491 0.85729 0.85769 0.76316 0.88951 0.89951 0.88479 0.88171 0.88763 0.87303 0.86256 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.63 13.96 55.48 0.77 -22.86 16 2 C 0.07 1.75 5.49 -17.51 -0.10 1.65 16 3 Si 0.91 20.33 28.62 -169.99 -4.86 15.47 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.39 -10.36 9.94 30.91 0.31 -10.06 16 8 H 0.11 2.97 5.41 -52.49 -0.28 2.69 16 9 O -0.20 -4.94 8.57 0.75 0.01 -4.94 16 10 C 0.17 3.71 6.66 -38.88 -0.26 3.45 16 11 C -0.23 -4.60 9.14 -39.47 -0.36 -4.96 16 12 C -0.04 -0.60 9.78 -39.15 -0.38 -0.99 16 13 C -0.19 -3.02 5.87 -105.02 -0.62 -3.63 16 14 C 0.04 0.56 9.45 -37.19 -0.35 0.21 16 15 C -0.28 -3.38 9.41 -37.50 -0.35 -3.73 16 16 C 0.56 6.84 7.73 -13.04 -0.10 6.74 16 17 O -0.55 -8.79 15.89 5.17 0.08 -8.71 16 18 N -0.73 -6.12 5.12 -53.72 -0.27 -6.39 16 19 C 0.14 1.14 2.90 -66.35 -0.19 0.94 16 20 H 0.11 1.06 7.56 -51.93 -0.39 0.67 16 21 C -0.14 -0.71 5.91 -25.61 -0.15 -0.86 16 22 C -0.07 -0.40 7.34 37.83 0.28 -0.12 16 23 S -0.29 -2.53 23.26 -107.50 -2.50 -5.04 16 24 C -0.08 -0.71 7.03 38.29 0.27 -0.44 16 25 C -0.04 -0.68 9.40 -39.14 -0.37 -1.05 16 26 C -0.20 -3.60 9.97 -39.46 -0.39 -3.99 16 27 H 0.28 7.12 8.31 -40.82 -0.34 6.79 16 28 H 0.14 2.87 5.62 -52.49 -0.29 2.58 16 29 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.12 1.74 7.52 -52.49 -0.39 1.34 16 31 H 0.12 1.22 6.07 -52.49 -0.32 0.90 16 32 H 0.40 2.30 8.57 -40.82 -0.35 1.95 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.12 1.43 6.16 -52.49 -0.32 1.11 16 40 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -29.68 352.91 -9.10 -38.78 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.87 Total: 5.19 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -2.77 Total: -16.82 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.50 Total: -29.25 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.86 Total: 15.47 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.50 Total: -5.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.68 -9.10 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081026421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.978 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds