Wall clock time and date at job start Tue Mar 31 2020 12:56:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.47573 * 2 1
4 4 C 1.50698 * 109.46874 * 240.00364 * 2 1 3
5 5 H 1.08007 * 120.00071 * 354.93235 * 4 2 1
6 6 C 1.37874 * 120.00327 * 174.92771 * 4 2 1
7 7 N 1.31518 * 120.00520 * 179.97438 * 6 4 2
8 8 Si 1.86803 * 119.99804 * 359.97438 * 6 4 2
9 9 H 1.48502 * 109.47065 * 84.86951 * 8 6 4
10 10 H 1.48497 * 109.47216 * 204.86742 * 8 6 4
11 11 H 1.48503 * 109.47149 * 324.87213 * 8 6 4
12 12 N 1.46901 * 109.47349 * 120.00788 * 2 1 3
13 13 C 1.46901 * 110.99890 * 58.94942 * 12 2 1
14 14 C 1.46900 * 110.99442 * 294.99654 * 12 2 1
15 15 C 1.50703 * 109.46765 * 189.99828 * 14 12 2
16 16 C 1.38279 * 119.93932 * 90.00181 * 15 14 12
17 17 C 1.38147 * 120.07971 * 180.27597 * 16 15 14
18 18 C 1.38711 * 119.95121 * 359.49102 * 17 16 15
19 19 O 1.35926 * 120.05673 * 180.25183 * 18 17 16
20 20 C 1.42898 * 117.00203 * 0.25916 * 19 18 17
21 21 F 1.39901 * 109.47056 * 299.99702 * 20 19 18
22 22 F 1.39902 * 109.47253 * 59.99370 * 20 19 18
23 23 C 1.38813 * 119.88289 * 0.51020 * 18 17 16
24 24 Cl 1.73600 * 120.03806 * 179.72737 * 23 18 17
25 25 C 1.38246 * 119.94245 * 270.02201 * 15 14 12
26 26 H 1.09001 * 109.47133 * 55.12188 * 1 2 3
27 27 H 1.09002 * 109.47069 * 175.12100 * 1 2 3
28 28 H 1.09003 * 109.46966 * 295.12235 * 1 2 3
29 29 H 0.97003 * 119.99912 * 180.02562 * 7 6 4
30 30 H 1.09000 * 109.47252 * 296.04817 * 13 12 2
31 31 H 1.09000 * 109.47149 * 56.05211 * 13 12 2
32 32 H 1.09001 * 109.46657 * 176.04949 * 13 12 2
33 33 H 1.09000 * 109.47433 * 70.00434 * 14 12 2
34 34 H 1.08999 * 109.47352 * 309.99761 * 14 12 2
35 35 H 1.08001 * 119.96203 * 359.97438 * 16 15 14
36 36 H 1.07999 * 120.02269 * 179.73070 * 17 16 15
37 37 H 1.09005 * 109.47424 * 180.02562 * 20 19 18
38 38 H 1.07998 * 119.97797 * 359.95500 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 1.3339 -1.1917 -1.8991
6 6 3.3834 -0.7457 -1.5029
7 7 3.8218 -1.3661 -2.5766
8 14 4.5914 0.0875 -0.3471
9 1 4.9329 -0.8378 0.7631
10 1 5.8254 0.4427 -1.0928
11 1 3.9760 1.3201 0.2075
12 7 2.0198 -0.6927 1.1993
13 6 1.5283 -2.0762 1.2457
14 6 1.6488 0.0390 2.4180
15 6 2.3680 -0.5575 3.6004
16 6 3.6113 -0.0756 3.9668
17 6 4.2757 -0.6241 5.0468
18 6 3.6901 -1.6523 5.7707
19 8 4.3397 -2.1900 6.8368
20 6 5.6203 -1.6439 7.1592
21 9 6.4843 -1.8074 6.0711
22 9 5.4870 -0.2816 7.4482
23 6 2.4421 -2.1346 5.4013
24 17 1.7086 -3.4261 6.3002
25 6 1.7839 -1.5856 4.3165
26 1 -0.3633 0.5877 -0.8431
27 1 -0.3633 -1.0240 -0.0874
28 1 -0.3633 0.4363 0.9305
29 1 4.7724 -1.3912 -2.7680
30 1 0.4420 -2.0732 1.3345
31 1 1.8167 -2.5951 0.3315
32 1 1.9618 -2.5870 2.1056
33 1 0.5724 -0.0347 2.5726
34 1 1.9299 1.0868 2.3125
35 1 4.0656 0.7272 3.4051
36 1 5.2485 -0.2500 5.3295
37 1 6.0280 -2.1618 8.0274
38 1 0.8126 -1.9600 4.0286
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000093091178.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:08
Heat of formation + Delta-G solvation = -116.314778 kcal
Electronic energy + Delta-G solvation = -25155.393262 eV
Core-core repulsion = 21080.931722 eV
Total energy + Delta-G solvation = -4074.461540 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.089 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-49.61332 -47.60052 -40.24753 -38.34358 -36.93637 -36.34202 -32.62738 -31.24336
-30.92233 -29.13233 -27.20297 -25.78156 -25.53312 -23.51602 -22.98520 -21.22722
-19.30035 -19.12781 -18.39984 -18.17602 -16.82867 -16.38472 -15.94570 -15.39236
-15.22212 -14.85927 -14.49327 -14.24328 -14.09657 -13.94917 -13.92437 -13.56864
-13.32072 -13.14866 -12.72299 -12.61770 -12.50018 -12.27613 -11.63955 -11.53174
-11.40139 -11.17857 -11.07217 -10.89075 -10.83869 -10.62364 -10.34513 -9.95639
-9.64194 -9.13575 -8.90970 -8.54723 -8.32860 -7.28814 -6.03353 -4.09977
1.10817 1.16030 2.04839 2.28720 3.18252 3.49286 3.49966 3.56543
3.65410 3.99768 4.34943 4.60009 4.61529 4.75014 4.85981 5.04876
5.23722 5.27374 5.44925 5.56543 5.84568 5.87909 5.99092 6.10047
6.14395 6.25864 6.26525 6.32330 6.36612 6.48716 6.62132 6.79513
6.81821 6.99092 7.19737 7.63068 7.98259 8.18209 8.56600 8.97122
9.61279 11.06540
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.015105 B = 0.004468 C = 0.003832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1853.297569 B = 6264.689515 C = 7304.346243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.170 3.830
3 H 0.045 0.955
4 C -0.512 4.512
5 H 0.071 0.929
6 C 0.084 3.916
7 N -0.899 5.899
8 Si 0.914 3.086
9 H -0.270 1.270
10 H -0.312 1.312
11 H -0.274 1.274
12 N -0.531 5.531
13 C 0.035 3.965
14 C 0.082 3.918
15 C -0.070 4.070
16 C -0.060 4.060
17 C -0.178 4.178
18 C 0.103 3.897
19 O -0.313 6.313
20 C 0.411 3.589
21 F -0.196 7.196
22 F -0.199 7.199
23 C -0.051 4.051
24 Cl -0.061 7.061
25 C -0.073 4.073
26 H 0.050 0.950
27 H 0.049 0.951
28 H 0.029 0.971
29 H 0.263 0.737
30 H 0.014 0.986
31 H 0.084 0.916
32 H 0.044 0.956
33 H 0.042 0.958
34 H 0.077 0.923
35 H 0.134 0.866
36 H 0.139 0.861
37 H 0.182 0.818
38 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.432 0.037 21.583 21.588
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.065 3.935
3 H 0.063 0.937
4 C -0.550 4.550
5 H 0.090 0.910
6 C -0.120 4.120
7 N -0.536 5.536
8 Si 0.745 3.255
9 H -0.195 1.195
10 H -0.241 1.241
11 H -0.199 1.199
12 N -0.256 5.256
13 C -0.113 4.113
14 C -0.045 4.045
15 C -0.071 4.071
16 C -0.079 4.079
17 C -0.197 4.197
18 C 0.059 3.941
19 O -0.231 6.231
20 C 0.321 3.679
21 F -0.178 7.178
22 F -0.181 7.181
23 C -0.078 4.078
24 Cl -0.032 7.032
25 C -0.092 4.092
26 H 0.069 0.931
27 H 0.068 0.932
28 H 0.048 0.952
29 H 0.073 0.927
30 H 0.032 0.968
31 H 0.103 0.897
32 H 0.063 0.937
33 H 0.060 0.940
34 H 0.096 0.904
35 H 0.152 0.848
36 H 0.156 0.844
37 H 0.198 0.802
38 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 0.975 -0.258 21.616 21.640
hybrid contribution 0.092 0.424 0.534 0.688
sum 1.066 0.166 22.151 22.177
Atomic orbital electron populations
1.22290 0.99880 1.00901 0.99242 1.19909 0.89889 0.95391 0.88307
0.93747 1.20858 0.93071 1.36061 1.04987 0.91042 1.25013 0.98657
0.93976 0.94397 1.69951 1.14840 1.42595 1.26217 0.86226 0.78444
0.80332 0.80547 1.19492 1.24116 1.19909 1.62768 1.59557 1.02551
1.00743 1.22202 0.96003 0.90690 1.02428 1.21113 0.96338 0.98181
0.88888 1.19977 0.95077 0.95723 0.96295 1.20989 0.93563 0.99004
0.94343 1.21453 1.01681 0.98070 0.98487 1.18403 0.91798 0.95116
0.88818 1.86654 1.30951 1.59144 1.46338 1.23365 0.78382 0.78049
0.88091 1.93124 1.70558 1.95055 1.59082 1.93100 1.95395 1.36106
1.93492 1.20045 0.93082 0.96483 0.98165 1.98353 1.82170 1.48376
1.74351 1.20857 1.00336 0.95510 0.92483 0.93064 0.93193 0.95167
0.92724 0.96766 0.89720 0.93717 0.94048 0.90439 0.84798 0.84361
0.80200 0.84161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.14 8.40 37.16 0.31 -2.83 16
2 C 0.17 3.79 1.70 -68.86 -0.12 3.67 16
3 H 0.04 1.03 6.80 -51.93 -0.35 0.68 16
4 C -0.51 -13.83 7.76 -34.44 -0.27 -14.10 16
5 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16
6 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16
7 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16
8 Si 0.91 22.91 26.26 -169.99 -4.46 18.44 16
9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16
10 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16
11 H -0.27 -6.52 6.52 56.52 0.37 -6.15 16
12 N -0.53 -10.87 2.78 -237.73 -0.66 -11.54 16
13 C 0.03 0.68 8.39 60.07 0.50 1.18 16
14 C 0.08 1.38 4.56 -4.97 -0.02 1.35 16
15 C -0.07 -1.09 4.88 -104.60 -0.51 -1.60 16
16 C -0.06 -0.93 9.69 -39.60 -0.38 -1.31 16
17 C -0.18 -2.55 8.26 -39.44 -0.33 -2.88 16
18 C 0.10 1.44 6.48 -39.19 -0.25 1.19 16
19 O -0.31 -3.73 9.89 -19.51 -0.19 -3.93 16
20 C 0.41 3.59 5.98 101.05 0.60 4.20 16
21 F -0.20 -2.17 15.57 2.25 0.04 -2.14 16
22 F -0.20 -2.00 15.60 2.25 0.04 -1.96 16
23 C -0.05 -0.72 6.33 -39.36 -0.25 -0.97 16
24 Cl -0.06 -0.78 28.50 -51.86 -1.48 -2.26 16
25 C -0.07 -1.05 7.74 -39.57 -0.31 -1.35 16
26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
27 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16
28 H 0.03 0.50 6.52 -51.93 -0.34 0.16 16
29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
30 H 0.01 0.25 6.62 -51.93 -0.34 -0.09 16
31 H 0.08 1.91 6.99 -51.93 -0.36 1.54 16
32 H 0.04 0.81 6.16 -51.93 -0.32 0.49 16
33 H 0.04 0.63 6.77 -51.93 -0.35 0.28 16
34 H 0.08 1.26 7.94 -51.93 -0.41 0.85 16
35 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16
36 H 0.14 1.82 5.10 -52.49 -0.27 1.55 16
37 H 0.18 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.14 1.84 8.03 -52.49 -0.42 1.41 16
LS Contribution 327.26 15.07 4.93 4.93
Total: -1.00 -30.97 327.26 -6.51 -37.48
By element:
Atomic # 1 Polarization: 2.96 SS G_CDS: -4.38 Total: -1.42 kcal
Atomic # 6 Polarization: -10.04 SS G_CDS: -1.11 Total: -11.16 kcal
Atomic # 7 Polarization: -38.10 SS G_CDS: 0.11 Total: -37.99 kcal
Atomic # 8 Polarization: -3.73 SS G_CDS: -0.19 Total: -3.93 kcal
Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.10 kcal
Atomic # 14 Polarization: 22.91 SS G_CDS: -4.46 Total: 18.44 kcal
Atomic # 17 Polarization: -0.78 SS G_CDS: -1.48 Total: -2.26 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -30.97 -6.51 -37.48 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093091178.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.831 kcal
(2) G-P(sol) polarization free energy of solvation -30.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.315 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds