Wall clock time and date at job start Tue Mar 31 2020 12:56:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.47573 * 2 1
4 4 C 1.50698 * 109.46874 * 240.00364 * 2 1 3
5 5 H 1.08007 * 120.00071 * 354.93235 * 4 2 1
6 6 C 1.37874 * 120.00327 * 174.92771 * 4 2 1
7 7 N 1.31518 * 120.00520 * 179.97438 * 6 4 2
8 8 Si 1.86803 * 119.99804 * 359.97438 * 6 4 2
9 9 H 1.48502 * 109.47065 * 84.86951 * 8 6 4
10 10 H 1.48497 * 109.47216 * 204.86742 * 8 6 4
11 11 H 1.48503 * 109.47149 * 324.87213 * 8 6 4
12 12 N 1.46901 * 109.47349 * 120.00788 * 2 1 3
13 13 C 1.46901 * 110.99890 * 58.94942 * 12 2 1
14 14 C 1.46900 * 110.99442 * 294.99654 * 12 2 1
15 15 C 1.50703 * 109.46765 * 189.99828 * 14 12 2
16 16 C 1.38279 * 119.93932 * 90.00181 * 15 14 12
17 17 C 1.38147 * 120.07971 * 180.27597 * 16 15 14
18 18 C 1.38711 * 119.95121 * 359.49102 * 17 16 15
19 19 O 1.35926 * 120.05673 * 180.25183 * 18 17 16
20 20 C 1.42898 * 117.00203 * 0.25916 * 19 18 17
21 21 F 1.39901 * 109.47056 * 299.99702 * 20 19 18
22 22 F 1.39902 * 109.47253 * 59.99370 * 20 19 18
23 23 C 1.38813 * 119.88289 * 0.51020 * 18 17 16
24 24 Cl 1.73600 * 120.03806 * 179.72737 * 23 18 17
25 25 C 1.38246 * 119.94245 * 270.02201 * 15 14 12
26 26 H 1.09001 * 109.47133 * 55.12188 * 1 2 3
27 27 H 1.09002 * 109.47069 * 175.12100 * 1 2 3
28 28 H 1.09003 * 109.46966 * 295.12235 * 1 2 3
29 29 H 0.97003 * 119.99912 * 180.02562 * 7 6 4
30 30 H 1.09000 * 109.47252 * 296.04817 * 13 12 2
31 31 H 1.09000 * 109.47149 * 56.05211 * 13 12 2
32 32 H 1.09001 * 109.46657 * 176.04949 * 13 12 2
33 33 H 1.09000 * 109.47433 * 70.00434 * 14 12 2
34 34 H 1.08999 * 109.47352 * 309.99761 * 14 12 2
35 35 H 1.08001 * 119.96203 * 359.97438 * 16 15 14
36 36 H 1.07999 * 120.02269 * 179.73070 * 17 16 15
37 37 H 1.09005 * 109.47424 * 180.02562 * 20 19 18
38 38 H 1.07998 * 119.97797 * 359.95500 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 1.3339 -1.1917 -1.8991
6 6 3.3834 -0.7457 -1.5029
7 7 3.8218 -1.3661 -2.5766
8 14 4.5914 0.0875 -0.3471
9 1 4.9329 -0.8378 0.7631
10 1 5.8254 0.4427 -1.0928
11 1 3.9760 1.3201 0.2075
12 7 2.0198 -0.6927 1.1993
13 6 1.5283 -2.0762 1.2457
14 6 1.6488 0.0390 2.4180
15 6 2.3680 -0.5575 3.6004
16 6 3.6113 -0.0756 3.9668
17 6 4.2757 -0.6241 5.0468
18 6 3.6901 -1.6523 5.7707
19 8 4.3397 -2.1900 6.8368
20 6 5.6203 -1.6439 7.1592
21 9 6.4843 -1.8074 6.0711
22 9 5.4870 -0.2816 7.4482
23 6 2.4421 -2.1346 5.4013
24 17 1.7086 -3.4261 6.3002
25 6 1.7839 -1.5856 4.3165
26 1 -0.3633 0.5877 -0.8431
27 1 -0.3633 -1.0240 -0.0874
28 1 -0.3633 0.4363 0.9305
29 1 4.7724 -1.3912 -2.7680
30 1 0.4420 -2.0732 1.3345
31 1 1.8167 -2.5951 0.3315
32 1 1.9618 -2.5870 2.1056
33 1 0.5724 -0.0347 2.5726
34 1 1.9299 1.0868 2.3125
35 1 4.0656 0.7272 3.4051
36 1 5.2485 -0.2500 5.3295
37 1 6.0280 -2.1618 8.0274
38 1 0.8126 -1.9600 4.0286
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000093091178.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:08
Heat of formation + Delta-G solvation = -134.899617 kcal
Electronic energy + Delta-G solvation = -25156.199161 eV
Core-core repulsion = 21080.931722 eV
Total energy + Delta-G solvation = -4075.267439 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.089 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-50.35442 -48.35233 -41.28807 -39.57035 -38.21118 -37.44647 -34.56355 -32.73430
-32.00501 -30.62228 -28.38262 -27.41778 -26.82171 -24.92249 -24.05668 -22.47093
-20.86812 -20.17296 -19.19709 -18.93149 -18.83743 -17.30518 -17.18544 -16.72602
-16.40702 -16.23163 -15.83600 -15.45065 -15.19355 -15.06080 -14.90133 -14.74888
-14.69334 -14.56150 -14.20910 -13.88399 -13.60222 -13.41008 -13.12504 -12.85791
-12.70548 -12.62107 -12.52314 -12.35694 -12.18047 -12.07463 -11.86315 -11.77311
-11.56728 -11.06010 -10.71716 -9.99826 -9.45087 -8.84128 -8.21664 -6.30538
0.00946 0.06452 1.01600 1.46493 1.49733 1.56209 1.63768 2.37420
2.50617 2.51845 3.08282 3.43398 3.55192 3.64452 3.67260 3.74863
3.86738 4.14798 4.17105 4.39239 4.51229 4.54891 4.64396 4.72372
4.77616 4.80028 4.84489 4.92495 5.01308 5.19226 5.32530 5.38733
5.47023 5.49934 5.69023 5.77242 6.12777 6.48557 6.63377 6.85515
7.43978 8.91615
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.015105 B = 0.004468 C = 0.003832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1853.297569 B = 6264.689515 C = 7304.346243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.173 3.827
3 H 0.043 0.957
4 C -0.506 4.506
5 H 0.032 0.968
6 C 0.030 3.970
7 N -0.950 5.950
8 Si 0.972 3.028
9 H -0.271 1.271
10 H -0.321 1.321
11 H -0.250 1.250
12 N -0.549 5.549
13 C 0.045 3.955
14 C 0.087 3.913
15 C -0.085 4.085
16 C -0.071 4.071
17 C -0.185 4.185
18 C 0.104 3.896
19 O -0.319 6.319
20 C 0.405 3.595
21 F -0.211 7.211
22 F -0.207 7.207
23 C -0.062 4.062
24 Cl -0.050 7.050
25 C -0.069 4.069
26 H 0.049 0.951
27 H 0.043 0.957
28 H 0.063 0.937
29 H 0.262 0.738
30 H 0.034 0.966
31 H 0.044 0.956
32 H 0.058 0.942
33 H 0.062 0.938
34 H 0.084 0.916
35 H 0.136 0.864
36 H 0.146 0.854
37 H 0.239 0.761
38 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.150 0.642 24.684 24.693
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.067 3.933
3 H 0.061 0.939
4 C -0.544 4.544
5 H 0.050 0.950
6 C -0.169 4.169
7 N -0.590 5.590
8 Si 0.801 3.199
9 H -0.197 1.197
10 H -0.251 1.251
11 H -0.175 1.175
12 N -0.274 5.274
13 C -0.103 4.103
14 C -0.040 4.040
15 C -0.086 4.086
16 C -0.090 4.090
17 C -0.203 4.203
18 C 0.059 3.941
19 O -0.236 6.236
20 C 0.316 3.684
21 F -0.193 7.193
22 F -0.189 7.189
23 C -0.090 4.090
24 Cl -0.021 7.021
25 C -0.088 4.088
26 H 0.068 0.932
27 H 0.063 0.937
28 H 0.082 0.918
29 H 0.070 0.930
30 H 0.052 0.948
31 H 0.063 0.937
32 H 0.077 0.923
33 H 0.080 0.920
34 H 0.102 0.898
35 H 0.154 0.846
36 H 0.164 0.836
37 H 0.255 0.745
38 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 0.670 0.359 24.745 24.757
hybrid contribution 0.131 0.174 -0.337 0.402
sum 0.802 0.534 24.408 24.427
Atomic orbital electron populations
1.22170 0.97441 1.00911 1.00985 1.19711 0.91895 0.94411 0.87251
0.93901 1.21129 0.92226 1.34757 1.06277 0.94970 1.25770 1.00577
0.94868 0.95650 1.70088 1.15001 1.45349 1.28600 0.85292 0.76082
0.80190 0.78361 1.19700 1.25084 1.17450 1.62393 1.60324 1.03004
1.01684 1.22065 0.97270 0.90085 1.00925 1.21118 0.97713 0.97965
0.87234 1.19880 0.95433 0.96714 0.96542 1.21126 0.93735 0.99312
0.94792 1.21562 1.02058 0.98298 0.98420 1.18544 0.91872 0.94594
0.89050 1.86667 1.32258 1.59347 1.45353 1.24354 0.76999 0.78064
0.88994 1.93095 1.70851 1.95096 1.60247 1.93083 1.95330 1.37029
1.93430 1.20181 0.93421 0.96933 0.98422 1.98355 1.81954 1.47782
1.74052 1.20978 1.00742 0.94900 0.92227 0.93228 0.93747 0.91823
0.92965 0.94783 0.93687 0.92318 0.92016 0.89790 0.84635 0.83600
0.74547 0.82907
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.65 8.40 71.98 0.60 -5.04 16
2 C 0.17 7.50 1.70 44.17 0.08 7.58 16
3 H 0.04 1.89 6.80 -2.39 -0.02 1.88 16
4 C -0.51 -27.84 7.76 25.60 0.20 -27.64 16
5 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16
6 C 0.03 1.74 5.47 84.65 0.46 2.20 16
7 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16
8 Si 0.97 47.53 26.26 68.60 1.80 49.33 16
9 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16
10 H -0.32 -16.04 7.11 99.48 0.71 -15.34 16
11 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16
12 N -0.55 -21.43 2.78 -906.03 -2.52 -23.95 16
13 C 0.04 1.68 8.39 127.69 1.07 2.75 16
14 C 0.09 2.62 4.56 85.56 0.39 3.01 16
15 C -0.08 -2.43 4.88 -19.85 -0.10 -2.52 16
16 C -0.07 -2.03 9.69 22.26 0.22 -1.81 16
17 C -0.18 -4.92 8.26 22.36 0.18 -4.73 16
18 C 0.10 2.69 6.48 22.52 0.15 2.84 16
19 O -0.32 -6.75 9.89 -92.72 -0.92 -7.67 16
20 C 0.40 5.87 5.98 113.37 0.68 6.55 16
21 F -0.21 -4.21 15.57 44.97 0.70 -3.51 16
22 F -0.21 -3.64 15.60 44.97 0.70 -2.94 16
23 C -0.06 -1.62 6.33 22.41 0.14 -1.48 16
24 Cl -0.05 -1.17 28.50 -2.72 -0.08 -1.25 16
25 C -0.07 -1.81 7.74 22.27 0.17 -1.64 16
26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
27 H 0.04 1.64 6.75 -2.39 -0.02 1.62 16
28 H 0.06 1.87 6.52 -2.39 -0.02 1.86 16
29 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16
30 H 0.03 1.13 6.62 -2.39 -0.02 1.12 16
31 H 0.04 2.04 6.99 -2.39 -0.02 2.02 16
32 H 0.06 2.03 6.16 -2.39 -0.01 2.01 16
33 H 0.06 1.63 6.77 -2.39 -0.02 1.61 16
34 H 0.08 2.44 7.94 -2.39 -0.02 2.42 16
35 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16
36 H 0.15 3.57 5.10 -2.91 -0.01 3.55 16
37 H 0.24 0.60 8.14 -2.38 -0.02 0.58 16
38 H 0.15 3.51 8.03 -2.91 -0.02 3.49 16
Total: -1.00 -68.47 327.26 5.27 -63.20
By element:
Atomic # 1 Polarization: 5.03 SS G_CDS: 1.04 Total: 6.07 kcal
Atomic # 6 Polarization: -24.19 SS G_CDS: 4.24 Total: -19.95 kcal
Atomic # 7 Polarization: -81.07 SS G_CDS: -2.22 Total: -83.29 kcal
Atomic # 8 Polarization: -6.75 SS G_CDS: -0.92 Total: -7.67 kcal
Atomic # 9 Polarization: -7.85 SS G_CDS: 1.40 Total: -6.45 kcal
Atomic # 14 Polarization: 47.53 SS G_CDS: 1.80 Total: 49.33 kcal
Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal
Total: -68.47 5.27 -63.20 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093091178.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.697 kcal
(2) G-P(sol) polarization free energy of solvation -68.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds