Wall clock time and date at job start Tue Mar 31 2020 13:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46965 * 2 1 4 4 C 1.36837 * 120.00284 * 93.93029 * 3 2 1 5 5 H 1.07999 * 120.00112 * 159.73546 * 4 3 2 6 6 C 1.39055 * 120.00054 * 339.74118 * 4 3 2 7 7 N 1.31367 * 119.99633 * 358.87609 * 6 4 3 8 8 Si 1.86798 * 120.00210 * 178.88098 * 6 4 3 9 9 H 1.48506 * 109.47222 * 59.99932 * 8 6 4 10 10 H 1.48497 * 109.47001 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47138 * 299.99918 * 8 6 4 12 12 C 1.34782 * 119.99758 * 273.93473 * 3 2 1 13 13 O 1.21668 * 119.99493 * 185.42229 * 12 3 2 14 14 C 1.47051 * 120.00190 * 5.42188 * 12 3 2 15 15 C 1.38287 * 126.78469 * 186.71862 * 14 12 3 16 16 C 1.40656 * 105.29224 * 180.02562 * 15 14 12 17 17 C 1.48443 * 126.20325 * 179.97438 * 16 15 14 18 18 C 1.39317 * 120.10608 * 359.72706 * 17 16 15 19 19 C 1.38008 * 119.89184 * 180.29834 * 18 17 16 20 20 C 1.38435 * 120.10521 * 359.97373 * 19 18 17 21 21 Cl 1.73600 * 119.89186 * 179.97438 * 20 19 18 22 22 C 1.38429 * 120.21259 * 0.02562 * 20 19 18 23 23 C 1.38001 * 120.10743 * 0.02562 * 22 20 19 24 24 N 1.31651 * 107.59178 * 0.22527 * 16 15 14 25 25 N 1.28425 * 110.81383 * 359.61314 * 24 16 15 26 26 H 0.97002 * 125.06011 * 180.13986 * 25 24 16 27 27 H 1.08999 * 109.46904 * 60.00599 * 1 2 3 28 28 H 1.09006 * 109.46635 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47065 * 299.99995 * 1 2 3 30 30 H 1.08994 * 109.47488 * 240.00235 * 2 1 3 31 31 H 1.08999 * 109.46904 * 119.99401 * 2 1 3 32 32 H 0.97004 * 119.99828 * 180.02562 * 7 6 4 33 33 H 1.08005 * 127.35270 * 0.05121 * 15 14 12 34 34 H 1.07994 * 120.05577 * 0.25258 * 18 17 16 35 35 H 1.07997 * 119.94424 * 179.97438 * 19 18 17 36 36 H 1.08006 * 119.94702 * 180.02562 * 22 20 19 37 37 H 1.07997 * 120.05641 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3230 1.9993 1.1822 5 1 2.9728 2.8619 1.1889 6 6 1.7960 1.5167 2.3751 7 7 0.9880 0.4809 2.3647 8 14 2.2367 2.3412 3.9923 9 1 1.8044 3.7615 3.9578 10 1 1.5496 1.6421 5.1077 11 1 3.7061 2.2759 4.1969 12 6 2.1674 2.0433 -1.1645 13 8 2.6651 3.1535 -1.1737 14 6 1.7286 1.4238 -2.4239 15 6 1.9289 1.9136 -3.7015 16 6 1.3297 0.9723 -4.5579 17 6 1.2751 1.0448 -6.0395 18 6 1.8483 2.1245 -6.7079 19 6 1.7895 2.1905 -8.0852 20 6 1.1628 1.1859 -8.8024 21 17 1.0916 1.2749 -10.5347 22 6 0.5918 0.1112 -8.1427 23 6 0.6445 0.0368 -6.7657 24 7 0.8213 0.0181 -3.8068 25 7 1.0416 0.2501 -2.5630 26 1 0.7590 -0.3204 -1.8312 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 0.6201 0.1444 3.1968 33 1 2.4374 2.8243 -3.9820 34 1 2.3371 2.9088 -6.1492 35 1 2.2332 3.0272 -8.6041 36 1 0.1043 -0.6704 -8.7066 37 1 0.1984 -0.8018 -6.2519 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124166139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:30 Heat of formation + Delta-G solvation = 92.838828 kcal Electronic energy + Delta-G solvation = -23482.697144 eV Core-core repulsion = 19867.994371 eV Total energy + Delta-G solvation = -3614.702773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.21897 -39.23788 -38.48213 -36.59479 -35.60205 -33.02778 -31.88622 -31.28460 -30.29976 -30.21847 -28.86211 -25.51256 -23.49824 -23.25810 -22.66577 -21.66636 -20.30568 -19.98838 -17.66477 -17.23412 -16.85532 -16.17105 -15.33602 -15.22934 -15.15565 -14.48056 -14.23516 -13.93709 -13.80393 -13.64283 -13.53461 -13.20220 -12.99261 -12.49462 -12.03763 -11.80629 -11.78025 -11.69764 -11.56610 -11.28032 -11.09947 -10.97370 -10.56325 -10.52771 -10.42239 -10.40936 -9.66811 -9.18148 -9.15413 -8.85520 -8.63358 -8.07971 -7.97537 -6.52645 -4.13753 0.82112 1.21803 1.89366 1.99544 2.83263 3.08666 3.11806 3.14968 3.29450 3.81790 3.89522 4.08810 4.39883 4.58366 4.72785 4.77861 4.88395 5.13590 5.23218 5.30850 5.49385 5.56257 5.57827 5.83213 5.90047 5.94285 6.05907 6.11835 6.18654 6.23880 6.38850 6.48282 6.65680 6.79991 6.96536 7.22269 7.32611 7.50272 7.83889 8.19996 8.33403 8.88406 9.07689 9.62965 10.40931 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.041296 B = 0.002519 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.871108 B =11114.361141 C =11712.794356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 N -0.429 5.429 4 C -0.294 4.294 5 H 0.107 0.893 6 C 0.027 3.973 7 N -0.878 5.878 8 Si 0.938 3.062 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.503 3.497 13 O -0.570 6.570 14 C 0.011 3.989 15 C -0.171 4.171 16 C 0.045 3.955 17 C 0.018 3.982 18 C -0.092 4.092 19 C -0.108 4.108 20 C -0.041 4.041 21 Cl -0.080 7.080 22 C -0.110 4.110 23 C -0.089 4.089 24 N -0.282 5.282 25 N -0.381 5.381 26 H 0.454 0.546 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.029 0.971 31 H 0.123 0.877 32 H 0.272 0.728 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -3.389 -14.798 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.020 4.020 3 N -0.147 5.147 4 C -0.422 4.422 5 H 0.125 0.875 6 C -0.175 4.175 7 N -0.519 5.519 8 Si 0.764 3.236 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.291 3.709 13 O -0.453 6.453 14 C -0.117 4.117 15 C -0.200 4.200 16 C -0.111 4.111 17 C 0.016 3.984 18 C -0.112 4.112 19 C -0.126 4.126 20 C -0.068 4.068 21 Cl -0.051 7.051 22 C -0.129 4.129 23 C -0.109 4.109 24 N -0.117 5.117 25 N -0.110 5.110 26 H 0.314 0.686 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.047 0.953 31 H 0.141 0.859 32 H 0.082 0.918 33 H 0.177 0.823 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.158 -3.967 -14.729 15.405 hybrid contribution 0.288 0.582 1.051 1.236 sum -1.869 -3.385 -13.677 14.213 Atomic orbital electron populations 1.22616 0.96251 1.01059 1.03437 1.21853 0.94717 0.84257 1.01173 1.43672 1.55088 1.10782 1.05191 1.19789 1.27223 1.12945 0.82271 0.87537 1.25439 0.95259 0.96628 1.00177 1.69934 1.30356 1.23548 1.28017 0.85786 0.78836 0.79313 0.79618 1.19621 1.20747 1.19691 1.16797 0.86463 0.86005 0.81663 1.90668 1.49150 1.19878 1.85607 1.22300 1.02321 0.89718 0.97412 1.21920 1.06422 1.02042 0.89644 1.20156 1.03898 0.94513 0.92528 1.17886 0.97184 0.94634 0.88653 1.21136 0.98958 0.97859 0.93258 1.20930 0.99708 0.98297 0.93695 1.20966 1.03613 0.98035 0.84152 1.98358 1.97374 1.98269 1.11079 1.20957 1.00185 0.97432 0.94299 1.21201 0.98225 0.98797 0.92674 1.73141 1.22109 1.25370 0.91033 1.45542 1.40558 1.18541 1.06320 0.68637 0.95562 0.93230 0.86594 0.95310 0.85908 0.91761 0.82263 0.84356 0.84730 0.84918 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.26 37.16 0.31 -3.01 16 2 C 0.10 2.13 4.81 -4.04 -0.02 2.11 16 3 N -0.43 -10.33 2.62 -116.17 -0.30 -10.64 16 4 C -0.29 -7.55 9.39 -15.01 -0.14 -7.69 16 5 H 0.11 2.86 7.30 -52.49 -0.38 2.48 16 6 C 0.03 0.65 5.31 -17.45 -0.09 0.55 16 7 N -0.88 -20.24 7.58 55.50 0.42 -19.82 16 8 Si 0.94 19.12 29.55 -169.99 -5.02 14.10 16 9 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 10 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 12 C 0.50 12.19 7.58 -12.69 -0.10 12.09 16 13 O -0.57 -15.43 16.58 5.22 0.09 -15.34 16 14 C 0.01 0.23 6.56 -82.10 -0.54 -0.31 16 15 C -0.17 -3.13 10.19 -38.65 -0.39 -3.53 16 16 C 0.04 0.74 6.99 -82.83 -0.58 0.16 16 17 C 0.02 0.25 5.88 -104.89 -0.62 -0.36 16 18 C -0.09 -1.09 9.58 -39.26 -0.38 -1.47 16 19 C -0.11 -1.13 9.81 -39.59 -0.39 -1.52 16 20 C -0.04 -0.43 6.32 -39.44 -0.25 -0.68 16 21 Cl -0.08 -0.77 28.95 -51.86 -1.50 -2.28 16 22 C -0.11 -1.17 9.81 -39.60 -0.39 -1.56 16 23 C -0.09 -1.09 9.69 -39.27 -0.38 -1.47 16 24 N -0.28 -4.91 11.82 33.40 0.39 -4.52 16 25 N -0.38 -6.95 5.04 33.45 0.17 -6.78 16 26 H 0.45 7.75 3.37 -190.46 -0.64 7.11 16 27 H 0.03 0.48 6.24 -51.93 -0.32 0.16 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.12 2.53 5.90 -51.93 -0.31 2.22 16 30 H 0.03 0.54 5.38 -51.93 -0.28 0.26 16 31 H 0.12 2.69 6.09 -51.93 -0.32 2.37 16 32 H 0.27 5.98 8.31 -40.82 -0.34 5.64 16 33 H 0.16 2.65 7.43 -52.48 -0.39 2.26 16 34 H 0.14 1.47 7.10 -52.49 -0.37 1.10 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.14 1.62 7.86 -52.49 -0.41 1.21 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -27.41 322.88 -8.67 -36.08 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -3.83 Total: 11.02 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -3.95 Total: -6.70 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.68 Total: -41.75 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.09 Total: -15.34 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.41 -8.67 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124166139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.922 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds