Wall clock time and date at job start Tue Mar 31 2020 13:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46965 * 2 1 4 4 C 1.36837 * 120.00284 * 93.93029 * 3 2 1 5 5 H 1.07999 * 120.00112 * 159.73546 * 4 3 2 6 6 C 1.39055 * 120.00054 * 339.74118 * 4 3 2 7 7 N 1.31367 * 119.99633 * 358.87609 * 6 4 3 8 8 Si 1.86798 * 120.00210 * 178.88098 * 6 4 3 9 9 H 1.48506 * 109.47222 * 59.99932 * 8 6 4 10 10 H 1.48497 * 109.47001 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47138 * 299.99918 * 8 6 4 12 12 C 1.34782 * 119.99758 * 273.93473 * 3 2 1 13 13 O 1.21668 * 119.99493 * 185.42229 * 12 3 2 14 14 C 1.47051 * 120.00190 * 5.42188 * 12 3 2 15 15 C 1.38287 * 126.78469 * 186.71862 * 14 12 3 16 16 C 1.40656 * 105.29224 * 180.02562 * 15 14 12 17 17 C 1.48443 * 126.20325 * 179.97438 * 16 15 14 18 18 C 1.39317 * 120.10608 * 359.72706 * 17 16 15 19 19 C 1.38008 * 119.89184 * 180.29834 * 18 17 16 20 20 C 1.38435 * 120.10521 * 359.97373 * 19 18 17 21 21 Cl 1.73600 * 119.89186 * 179.97438 * 20 19 18 22 22 C 1.38429 * 120.21259 * 0.02562 * 20 19 18 23 23 C 1.38001 * 120.10743 * 0.02562 * 22 20 19 24 24 N 1.31651 * 107.59178 * 0.22527 * 16 15 14 25 25 N 1.28425 * 110.81383 * 359.61314 * 24 16 15 26 26 H 0.97002 * 125.06011 * 180.13986 * 25 24 16 27 27 H 1.08999 * 109.46904 * 60.00599 * 1 2 3 28 28 H 1.09006 * 109.46635 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47065 * 299.99995 * 1 2 3 30 30 H 1.08994 * 109.47488 * 240.00235 * 2 1 3 31 31 H 1.08999 * 109.46904 * 119.99401 * 2 1 3 32 32 H 0.97004 * 119.99828 * 180.02562 * 7 6 4 33 33 H 1.08005 * 127.35270 * 0.05121 * 15 14 12 34 34 H 1.07994 * 120.05577 * 0.25258 * 18 17 16 35 35 H 1.07997 * 119.94424 * 179.97438 * 19 18 17 36 36 H 1.08006 * 119.94702 * 180.02562 * 22 20 19 37 37 H 1.07997 * 120.05641 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3230 1.9993 1.1822 5 1 2.9728 2.8619 1.1889 6 6 1.7960 1.5167 2.3751 7 7 0.9880 0.4809 2.3647 8 14 2.2367 2.3412 3.9923 9 1 1.8044 3.7615 3.9578 10 1 1.5496 1.6421 5.1077 11 1 3.7061 2.2759 4.1969 12 6 2.1674 2.0433 -1.1645 13 8 2.6651 3.1535 -1.1737 14 6 1.7286 1.4238 -2.4239 15 6 1.9289 1.9136 -3.7015 16 6 1.3297 0.9723 -4.5579 17 6 1.2751 1.0448 -6.0395 18 6 1.8483 2.1245 -6.7079 19 6 1.7895 2.1905 -8.0852 20 6 1.1628 1.1859 -8.8024 21 17 1.0916 1.2749 -10.5347 22 6 0.5918 0.1112 -8.1427 23 6 0.6445 0.0368 -6.7657 24 7 0.8213 0.0181 -3.8068 25 7 1.0416 0.2501 -2.5630 26 1 0.7590 -0.3204 -1.8312 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 0.6201 0.1444 3.1968 33 1 2.4374 2.8243 -3.9820 34 1 2.3371 2.9088 -6.1492 35 1 2.2332 3.0272 -8.6041 36 1 0.1043 -0.6704 -8.7066 37 1 0.1984 -0.8018 -6.2519 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124166139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:30 Heat of formation + Delta-G solvation = 79.212122 kcal Electronic energy + Delta-G solvation = -23483.288043 eV Core-core repulsion = 19867.994371 eV Total energy + Delta-G solvation = -3615.293671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.65912 -40.44564 -39.96642 -37.48316 -37.37123 -34.51057 -33.44762 -32.27507 -31.86906 -31.61798 -30.12832 -27.32031 -24.74985 -24.51219 -24.05002 -23.07873 -21.58412 -21.43238 -19.36928 -18.73146 -18.10133 -17.53494 -16.80044 -16.74728 -16.24127 -15.95214 -15.77243 -15.48937 -15.23810 -14.71510 -14.52804 -14.45640 -14.42635 -14.06435 -13.70905 -13.33056 -12.99104 -12.85616 -12.69558 -12.66267 -12.59547 -12.32418 -12.13405 -12.03465 -11.96216 -11.66237 -11.00768 -10.83288 -10.71598 -10.18011 -10.01132 -9.80510 -9.16755 -8.35177 -6.05469 -0.16136 0.31352 0.35736 1.16480 1.42975 1.44149 1.52126 1.62947 1.85206 2.21246 2.29697 2.76971 2.83327 3.03175 3.28662 3.62198 3.80300 3.96714 3.98377 4.05221 4.32950 4.36765 4.48118 4.52989 4.56936 4.66778 4.71396 4.89810 5.03221 5.13675 5.24439 5.25867 5.35338 5.45909 5.49822 5.78328 5.79881 5.88057 6.02712 6.38269 6.89725 7.01490 7.23237 7.78066 8.55768 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.041296 B = 0.002519 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.871108 B =11114.361141 C =11712.794356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.437 5.437 4 C -0.339 4.339 5 H 0.080 0.920 6 C 0.004 3.996 7 N -0.873 5.873 8 Si 0.996 3.004 9 H -0.279 1.279 10 H -0.267 1.267 11 H -0.271 1.271 12 C 0.492 3.508 13 O -0.615 6.615 14 C -0.015 4.015 15 C -0.168 4.168 16 C 0.056 3.944 17 C -0.010 4.010 18 C -0.092 4.092 19 C -0.106 4.106 20 C -0.040 4.040 21 Cl -0.068 7.068 22 C -0.107 4.107 23 C -0.090 4.090 24 N -0.278 5.278 25 N -0.377 5.377 26 H 0.457 0.543 27 H 0.027 0.973 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.279 0.721 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 -4.435 -16.310 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.154 5.154 4 C -0.467 4.467 5 H 0.098 0.902 6 C -0.198 4.198 7 N -0.512 5.512 8 Si 0.819 3.181 9 H -0.204 1.204 10 H -0.191 1.191 11 H -0.196 1.196 12 C 0.280 3.720 13 O -0.501 6.501 14 C -0.143 4.143 15 C -0.197 4.197 16 C -0.100 4.100 17 C -0.012 4.012 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.067 4.067 21 Cl -0.039 7.039 22 C -0.126 4.126 23 C -0.110 4.110 24 N -0.112 5.112 25 N -0.106 5.106 26 H 0.317 0.683 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.188 0.812 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.934 -5.071 -16.239 17.263 hybrid contribution 0.487 0.864 1.353 1.678 sum -2.448 -4.207 -14.886 15.661 Atomic orbital electron populations 1.22446 0.94881 1.02789 1.02097 1.21922 0.95765 0.82549 1.01498 1.43866 1.54728 1.11909 1.04850 1.19708 1.29267 1.13819 0.83886 0.90202 1.26069 0.94727 0.96963 1.02078 1.70018 1.29152 1.23013 1.28990 0.84945 0.78638 0.78022 0.76453 1.20430 1.19096 1.19577 1.17252 0.86106 0.85802 0.82792 1.90608 1.51190 1.21768 1.86542 1.21875 1.04626 0.91338 0.96493 1.22184 1.05844 1.02517 0.89197 1.20532 1.02330 0.93265 0.93899 1.17941 0.99709 0.96466 0.87042 1.21273 0.98515 0.97460 0.93961 1.21158 0.99226 0.98869 0.93153 1.21154 1.02814 0.97881 0.84888 1.98370 1.97262 1.98219 1.10016 1.21159 0.99773 0.97924 0.93733 1.21260 0.97920 0.98426 0.93360 1.73155 1.22008 1.25466 0.90597 1.45421 1.40524 1.17892 1.06769 0.68300 0.95438 0.89872 0.89244 0.93217 0.87266 0.91081 0.81243 0.83603 0.82565 0.82755 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.11 8.26 71.98 0.59 -5.51 16 2 C 0.11 4.36 4.81 86.38 0.42 4.77 16 3 N -0.44 -21.75 2.62 -639.67 -1.68 -23.43 16 4 C -0.34 -18.11 9.39 84.11 0.79 -17.32 16 5 H 0.08 4.58 7.30 -2.91 -0.02 4.56 16 6 C 0.00 0.21 5.31 84.96 0.45 0.66 16 7 N -0.87 -40.02 7.58 21.68 0.16 -39.85 16 8 Si 1.00 39.33 29.55 68.60 2.03 41.36 16 9 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 12 C 0.49 24.79 7.58 86.55 0.66 25.44 16 13 O -0.61 -35.05 16.58 -4.25 -0.07 -35.12 16 14 C -0.02 -0.63 6.56 40.71 0.27 -0.37 16 15 C -0.17 -6.16 10.19 22.87 0.23 -5.92 16 16 C 0.06 1.80 6.99 42.48 0.30 2.10 16 17 C -0.01 -0.25 5.88 -20.04 -0.12 -0.37 16 18 C -0.09 -2.02 9.58 22.47 0.22 -1.80 16 19 C -0.11 -1.94 9.81 22.26 0.22 -1.72 16 20 C -0.04 -0.75 6.32 22.36 0.14 -0.61 16 21 Cl -0.07 -1.13 28.95 -2.72 -0.08 -1.20 16 22 C -0.11 -1.99 9.81 22.26 0.22 -1.77 16 23 C -0.09 -2.02 9.69 22.47 0.22 -1.80 16 24 N -0.28 -9.39 11.82 -48.25 -0.57 -9.96 16 25 N -0.38 -13.58 5.04 -48.09 -0.24 -13.82 16 26 H 0.46 15.25 3.37 -220.01 -0.74 14.51 16 27 H 0.03 1.00 6.24 -2.39 -0.01 0.99 16 28 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 29 H 0.09 3.88 5.90 -2.39 -0.01 3.86 16 30 H 0.05 1.83 5.38 -2.39 -0.01 1.82 16 31 H 0.11 4.80 6.09 -2.39 -0.01 4.78 16 32 H 0.28 11.94 8.31 -92.71 -0.77 11.17 16 33 H 0.17 5.68 7.43 -2.91 -0.02 5.66 16 34 H 0.15 2.89 7.10 -2.91 -0.02 2.87 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.14 3.02 7.86 -2.91 -0.02 3.00 16 Total: -1.00 -60.48 322.88 4.55 -55.93 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.40 Total: 30.32 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.60 Total: -4.22 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -2.33 Total: -87.06 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.07 Total: -35.12 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -60.48 4.55 -55.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124166139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.141 kcal (2) G-P(sol) polarization free energy of solvation -60.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds