Wall clock time and date at job start Tue Mar 31 2020 12:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31069 * 126.65971 * 2 1 4 4 N 1.28840 * 107.99213 * 180.02562 * 3 2 1 5 5 N 1.28739 * 109.39454 * 359.73227 * 4 3 2 6 6 N 1.29014 * 108.80871 * 0.43726 * 5 4 3 7 7 C 1.46505 * 126.43883 * 179.83541 * 6 5 4 8 8 C 1.50695 * 109.47211 * 269.69292 * 7 6 5 9 9 O 1.21295 * 120.00258 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00184 * 179.97438 * 8 7 6 11 11 C 1.39933 * 119.99850 * 185.73956 * 10 8 7 12 12 C 1.38676 * 120.11802 * 24.75193 * 11 10 8 13 13 C 1.38224 * 120.01891 * 180.02562 * 12 11 10 14 14 C 1.38395 * 120.25255 * 359.96098 * 13 12 11 15 15 C 1.38078 * 120.22564 * 0.02562 * 14 13 12 16 16 C 1.38996 * 119.98029 * 0.03320 * 15 14 13 17 17 S 1.76200 * 120.12498 * 179.97438 * 16 15 14 18 18 C 1.76195 * 100.00102 * 5.61095 * 17 16 15 19 19 H 1.08004 * 120.00256 * 354.97164 * 18 17 16 20 20 C 1.38692 * 120.00210 * 174.96758 * 18 17 16 21 21 N 1.31647 * 119.99714 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99935 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47053 * 60.00263 * 22 20 18 24 24 H 1.48496 * 109.46677 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47351 * 300.00010 * 22 20 18 26 26 H 1.08999 * 109.47260 * 269.95827 * 1 2 3 27 27 H 1.08997 * 109.47359 * 29.96300 * 1 2 3 28 28 H 1.09000 * 109.46885 * 149.96348 * 1 2 3 29 29 H 1.09002 * 109.47213 * 149.69055 * 7 6 5 30 30 H 1.09000 * 109.46851 * 29.68861 * 7 6 5 31 31 H 0.96995 * 119.99410 * 5.73807 * 10 8 7 32 32 H 1.08001 * 119.99232 * 0.02600 * 12 11 10 33 33 H 1.08002 * 119.87197 * 179.97438 * 13 12 11 34 34 H 1.07995 * 119.88578 * 179.74664 * 14 13 12 35 35 H 1.08005 * 120.00914 * 179.97438 * 15 14 13 36 36 H 0.97002 * 119.99961 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2895 1.0514 0.0000 4 7 3.5102 0.6390 -0.0005 5 7 3.5265 -0.6482 0.0048 6 7 2.3106 -1.0797 -0.0005 7 6 1.8847 -2.4815 -0.0006 8 6 1.7382 -2.9618 -1.4215 9 8 1.9666 -2.2074 -2.3434 10 7 1.3534 -4.2298 -1.6679 11 6 1.3330 -4.7120 -2.9814 12 6 2.1485 -4.1391 -3.9457 13 6 2.1263 -4.6167 -5.2426 14 6 1.2928 -5.6672 -5.5846 15 6 0.4769 -6.2455 -4.6326 16 6 0.4906 -5.7720 -3.3258 17 16 -0.5496 -6.5066 -2.1081 18 6 -1.2184 -7.8424 -3.0424 19 1 -0.9893 -7.9340 -4.0939 20 6 -2.0390 -8.7763 -2.4277 21 7 -2.3187 -8.6644 -1.1461 22 14 -2.7475 -10.1928 -3.4182 23 1 -1.6397 -11.0050 -3.9825 24 1 -3.5847 -11.0441 -2.5352 25 1 -3.5807 -9.6558 -4.5239 26 1 -0.3634 -0.0007 1.0276 27 1 -0.3634 0.8903 -0.5132 28 1 -0.3633 -0.8897 -0.5144 29 1 0.9277 -2.5705 0.5135 30 1 2.6308 -3.0879 0.5128 31 1 1.0906 -4.8079 -0.9348 32 1 2.8010 -3.3195 -3.6833 33 1 2.7621 -4.1684 -5.9918 34 1 1.2773 -6.0330 -6.6006 35 1 -0.1725 -7.0649 -4.9034 36 1 -2.8930 -9.3173 -0.7162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131677781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:38 Heat of formation + Delta-G solvation = 116.826563 kcal Electronic energy + Delta-G solvation = -23302.938725 eV Core-core repulsion = 19723.612596 eV Total energy + Delta-G solvation = -3579.326129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.084 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -44.29703 -40.52679 -38.09230 -35.68845 -34.77084 -33.74786 -32.89171 -30.60410 -30.45651 -28.97019 -28.02495 -26.02414 -23.91928 -23.03579 -22.51376 -21.87497 -20.49923 -18.74709 -18.02737 -17.76610 -16.70979 -16.53998 -16.19581 -15.83179 -15.24570 -15.07410 -14.49968 -14.33877 -14.09160 -13.76116 -13.53871 -13.23263 -13.08511 -13.00237 -12.63011 -12.44491 -12.13820 -11.83913 -11.68307 -11.33400 -11.30753 -11.25962 -11.20836 -10.54684 -10.42908 -10.17681 -10.04617 -9.73492 -9.64452 -8.96515 -8.83063 -7.89365 -6.70469 -6.66313 -4.38986 1.02659 1.54922 1.62886 1.90819 2.14707 2.41906 2.80399 2.99659 3.03223 3.07560 3.20053 3.80520 3.85019 3.90786 4.19015 4.29969 4.39748 4.46342 4.77675 4.91702 5.02324 5.14636 5.26169 5.44658 5.46858 5.52052 5.56768 5.70217 5.87564 5.95875 6.02989 6.35663 6.61132 6.68369 6.90661 7.06428 7.29661 7.38200 7.48887 7.89173 7.99656 8.49573 8.82815 10.40847 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.003277 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.435745 B = 8541.601888 C = 9578.664167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.199 3.801 3 N -0.307 5.307 4 N -0.074 5.074 5 N -0.085 5.085 6 N -0.295 5.295 7 C 0.094 3.906 8 C 0.496 3.504 9 O -0.508 6.508 10 N -0.643 5.643 11 C 0.118 3.882 12 C -0.108 4.108 13 C -0.146 4.146 14 C -0.111 4.111 15 C -0.128 4.128 16 C -0.102 4.102 17 S 0.033 5.967 18 C -0.547 4.547 19 H 0.095 0.905 20 C 0.079 3.921 21 N -0.865 5.865 22 Si 0.925 3.075 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.269 1.269 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.415 0.585 32 H 0.134 0.866 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 7.773 3.108 8.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 N -0.157 5.157 4 N -0.067 5.067 5 N -0.071 5.071 6 N -0.096 5.096 7 C -0.032 4.032 8 C 0.280 3.720 9 O -0.383 6.383 10 N -0.287 5.287 11 C 0.016 3.984 12 C -0.129 4.129 13 C -0.169 4.169 14 C -0.132 4.132 15 C -0.154 4.154 16 C -0.219 4.219 17 S 0.287 5.713 18 C -0.694 4.694 19 H 0.113 0.887 20 C -0.131 4.131 21 N -0.498 5.498 22 Si 0.750 3.250 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.194 1.194 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.253 0.747 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.158 0.842 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.162 9.071 4.015 10.757 hybrid contribution -1.110 -2.259 -1.546 2.953 sum 3.052 6.812 2.469 7.862 Atomic orbital electron populations 1.20452 0.82385 1.06024 1.04890 1.26105 0.98790 0.82374 1.00595 1.75006 0.96876 1.24164 1.19643 1.78580 1.12914 1.00511 1.14741 1.78883 1.02015 1.08269 1.17915 1.47829 1.04783 1.08825 1.48193 1.21983 1.05972 0.77600 0.97659 1.20290 0.78798 0.82495 0.90441 1.90783 1.48388 1.54315 1.44791 1.43175 1.64637 1.12116 1.08819 1.17086 0.99492 0.98165 0.83658 1.21055 0.98494 1.00567 0.92776 1.20780 1.01589 0.98697 0.95867 1.21017 0.96885 0.96530 0.98795 1.21315 1.00864 1.01550 0.91643 1.22442 0.99856 0.99373 1.00236 1.82945 1.44306 1.29918 1.14083 1.23213 1.35728 1.11716 0.98746 0.88700 1.25083 0.94952 0.97807 0.95286 1.69965 1.34324 1.35886 1.09662 0.86096 0.79144 0.80229 0.79552 1.19425 1.20514 1.19417 0.88378 0.87706 0.89332 0.83718 0.83526 0.74681 0.84794 0.86828 0.86876 0.84203 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.02 36.00 0.36 -0.18 16 2 C 0.20 2.32 8.13 -155.44 -1.26 1.05 16 3 N -0.31 -4.52 12.36 32.70 0.40 -4.12 16 4 N -0.07 -1.19 13.43 60.35 0.81 -0.37 16 5 N -0.09 -1.25 13.29 60.35 0.80 -0.45 16 6 N -0.29 -3.48 2.83 -59.44 -0.17 -3.65 16 7 C 0.09 0.78 6.55 -5.19 -0.03 0.74 16 8 C 0.50 6.31 7.70 -10.99 -0.08 6.23 16 9 O -0.51 -8.50 13.60 5.54 0.08 -8.42 16 10 N -0.64 -8.89 5.17 -9.70 -0.05 -8.94 16 11 C 0.12 2.07 6.44 -83.45 -0.54 1.54 16 12 C -0.11 -1.87 8.71 -39.43 -0.34 -2.21 16 13 C -0.15 -2.38 10.04 -39.53 -0.40 -2.77 16 14 C -0.11 -1.86 10.03 -39.58 -0.40 -2.26 16 15 C -0.13 -2.47 9.26 -39.36 -0.36 -2.83 16 16 C -0.10 -2.01 6.12 -38.75 -0.24 -2.25 16 17 S 0.03 0.73 20.37 -107.50 -2.19 -1.46 16 18 C -0.55 -13.49 9.08 30.90 0.28 -13.21 16 19 H 0.10 2.25 4.81 -52.48 -0.25 2.00 16 20 C 0.08 1.96 5.49 -17.46 -0.10 1.86 16 21 N -0.87 -22.30 13.22 55.48 0.73 -21.56 16 22 Si 0.92 19.08 29.55 -169.99 -5.02 14.05 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.57 7.81 -51.93 -0.41 0.16 16 29 H 0.15 0.60 7.75 -51.93 -0.40 0.19 16 30 H 0.15 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.42 4.99 7.65 -40.82 -0.31 4.68 16 32 H 0.13 2.35 5.79 -52.49 -0.30 2.05 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.14 2.80 4.93 -52.48 -0.26 2.54 16 36 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -32.86 330.31 -5.93 -38.79 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.18 Total: 5.46 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -3.11 Total: -14.30 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 2.53 Total: -39.10 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.19 Total: -1.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.86 -5.93 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131677781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.616 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds