Wall clock time and date at job start Tue Mar 31 2020 12:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21623 * 119.99805 * 0.02562 * 13 12 2 15 15 C 1.47285 * 120.00174 * 180.02562 * 13 12 2 16 16 C 1.37966 * 126.80428 * 0.02562 * 15 13 12 17 17 N 1.34159 * 107.88381 * 180.02562 * 16 15 13 18 18 H 0.96997 * 125.16398 * 180.02562 * 17 16 15 19 19 N 1.39769 * 109.67583 * 0.02562 * 17 16 15 20 20 C 1.31369 * 109.07894 * 359.70061 * 19 17 16 21 21 C 1.48294 * 126.51521 * 180.26402 * 20 19 17 22 22 C 1.39408 * 120.11948 * 325.21914 * 21 20 19 23 23 C 1.37988 * 119.90354 * 179.97438 * 22 21 20 24 24 C 1.38335 * 120.13597 * 359.97438 * 23 22 21 25 25 C 1.38422 * 120.24194 * 359.97318 * 24 23 22 26 26 Cl 1.73594 * 119.95214 * 180.02562 * 25 24 23 27 27 C 1.38157 * 120.09778 * 359.79655 * 25 24 23 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 33 33 H 1.07994 * 126.06140 * 0.02562 * 16 15 13 34 34 H 1.08003 * 120.04590 * 359.95191 * 22 21 20 35 35 H 1.08001 * 119.93367 * 180.02562 * 23 22 21 36 36 H 1.08000 * 119.87668 * 180.02562 * 24 23 22 37 37 H 1.07992 * 120.06900 * 180.25330 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1619 -2.4116 15 6 2.6376 -0.7127 -3.5598 16 6 3.0030 -2.0396 -3.6569 17 7 3.3907 -2.2688 -4.9206 18 1 3.6985 -3.1219 -5.2645 19 7 3.2838 -1.0916 -5.6665 20 6 2.8298 -0.1323 -4.8922 21 6 2.5657 1.2718 -5.2894 22 6 3.3814 1.8977 -6.2308 23 6 3.1313 3.2043 -6.5975 24 6 2.0729 3.8935 -6.0334 25 6 1.2586 3.2773 -5.0989 26 17 -0.0680 4.1491 -4.3962 27 6 1.4972 1.9680 -4.7280 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 0.7081 1.1610 3.4844 32 1 2.2490 -1.6317 -1.1525 33 1 2.9808 -2.7652 -2.8573 34 1 4.2082 1.3609 -6.6722 35 1 3.7627 3.6895 -7.3271 36 1 1.8807 4.9158 -6.3238 37 1 0.8591 1.4864 -4.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176123791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:00 Heat of formation + Delta-G solvation = 52.863036 kcal Electronic energy + Delta-G solvation = -23662.080005 eV Core-core repulsion = 20045.643752 eV Total energy + Delta-G solvation = -3616.436253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12240 -38.93503 -38.37995 -36.20912 -34.78093 -32.83621 -32.38778 -30.79714 -30.41092 -29.74185 -28.33384 -25.24201 -23.65740 -23.21751 -22.47576 -20.86183 -19.99241 -19.21375 -18.51366 -16.86769 -16.61937 -15.65592 -15.49543 -15.29048 -15.09601 -14.78785 -14.22460 -14.00217 -13.89673 -13.48690 -13.31513 -13.13671 -12.66499 -12.30696 -11.74545 -11.56621 -11.46546 -11.42383 -11.13179 -10.96563 -10.91168 -10.74313 -10.55053 -10.31751 -10.21923 -10.03884 -9.16155 -9.04196 -8.82269 -8.56246 -8.48677 -8.33687 -7.85063 -6.11157 -4.20670 0.94801 1.40786 1.62163 2.27539 2.42858 2.64538 3.25087 3.30953 3.31509 3.79110 4.02798 4.07917 4.31361 4.46820 4.61857 4.93052 5.05374 5.20078 5.21110 5.26204 5.40616 5.58314 5.71185 5.73979 6.01494 6.18175 6.39362 6.48240 6.55320 6.85949 6.88045 7.00625 7.03284 7.17672 7.42079 7.49137 7.59142 7.71716 7.94364 8.17078 8.68488 8.79976 9.15845 9.46983 10.94601 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.004030 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.638333 B = 6945.890203 C = 8629.469670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.704 5.704 13 C 0.574 3.426 14 O -0.544 6.544 15 C -0.264 4.264 16 C 0.100 3.900 17 N -0.468 5.468 18 H 0.442 0.558 19 N -0.286 5.286 20 C 0.166 3.834 21 C -0.015 4.015 22 C -0.086 4.086 23 C -0.125 4.125 24 C -0.101 4.101 25 C -0.042 4.042 26 Cl -0.069 7.069 27 C -0.038 4.038 28 H 0.025 0.975 29 H 0.016 0.984 30 H 0.089 0.911 31 H 0.265 0.735 32 H 0.384 0.616 33 H 0.189 0.811 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -2.538 -17.156 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.350 5.350 13 C 0.360 3.640 14 O -0.424 6.424 15 C -0.279 4.279 16 C -0.049 4.049 17 N -0.174 5.174 18 H 0.286 0.714 19 N -0.107 5.107 20 C -0.003 4.003 21 C -0.017 4.017 22 C -0.106 4.106 23 C -0.144 4.144 24 C -0.120 4.120 25 C -0.069 4.069 26 Cl -0.040 7.040 27 C -0.057 4.057 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.216 0.784 33 H 0.206 0.794 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.448 -1.821 -18.076 18.492 hybrid contribution 0.337 -1.312 1.743 2.208 sum 3.785 -3.132 -16.333 17.056 Atomic orbital electron populations 1.22074 0.98420 0.99016 1.00988 1.18740 0.90982 0.94066 0.79686 0.93123 1.21162 1.32551 1.13231 0.90382 0.92255 1.24867 0.94818 0.94938 0.98974 1.69890 1.35672 1.22359 1.23967 0.86535 0.79146 0.79565 0.81985 1.20223 1.21136 1.20231 1.46393 1.65127 1.13175 1.10346 1.17181 0.78216 0.86501 0.82130 1.90712 1.52078 1.15274 1.84379 1.21728 1.17086 0.93348 0.95751 1.23075 0.96028 0.97289 0.88550 1.45873 1.52935 1.11227 1.07348 0.71419 1.77251 1.23940 0.91348 1.18186 1.21683 0.95822 0.92619 0.90152 1.17490 0.96769 0.89202 0.98250 1.21232 0.98743 0.94832 0.95784 1.20889 0.97959 0.94397 1.01118 1.21124 0.94691 1.00242 0.95944 1.20753 0.93449 0.93641 0.99073 1.98369 1.46107 1.75955 1.83543 1.21626 0.96523 0.92199 0.95397 0.95614 0.96486 0.89203 0.92518 0.78397 0.79390 0.85407 0.85108 0.85172 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.27 6.61 2.56 -69.08 -0.18 6.43 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.56 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 12 N -0.70 -14.06 5.06 -56.05 -0.28 -14.34 16 13 C 0.57 11.31 7.63 -12.58 -0.10 11.22 16 14 O -0.54 -12.37 12.13 5.26 0.06 -12.31 16 15 C -0.26 -4.19 6.26 -102.95 -0.64 -4.84 16 16 C 0.10 1.13 11.50 -16.63 -0.19 0.93 16 17 N -0.47 -4.76 7.20 30.81 0.22 -4.54 16 18 H 0.44 2.65 8.96 -182.85 -1.64 1.01 16 19 N -0.29 -3.92 12.63 34.57 0.44 -3.48 16 20 C 0.17 2.60 6.94 -80.56 -0.56 2.04 16 21 C -0.01 -0.23 5.73 -104.91 -0.60 -0.83 16 22 C -0.09 -1.13 9.76 -39.24 -0.38 -1.51 16 23 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 24 C -0.10 -1.26 9.82 -39.48 -0.39 -1.64 16 25 C -0.04 -0.65 6.31 -39.54 -0.25 -0.90 16 26 Cl -0.07 -1.04 28.95 -51.86 -1.50 -2.54 16 27 C -0.04 -0.63 7.55 -39.20 -0.30 -0.93 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.38 6.41 7.49 -40.82 -0.31 6.10 16 33 H 0.19 1.42 7.48 -52.49 -0.39 1.02 16 34 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.16 3.04 5.69 -52.49 -0.30 2.74 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -31.98 335.32 -9.44 -41.42 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.00 Total: 6.89 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.03 Total: -7.50 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 1.00 Total: -46.30 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.06 Total: -12.31 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.98 -9.44 -41.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176123791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.281 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds