Wall clock time and date at job start Tue Mar 31 2020 12:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47300 * 54.92980 * 3 2 1 5 5 C 1.50701 * 109.47261 * 174.92406 * 3 2 1 6 6 H 1.07993 * 120.00375 * 119.99762 * 5 3 2 7 7 C 1.37882 * 120.00025 * 300.00670 * 5 3 2 8 8 N 1.31518 * 119.99769 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00231 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47602 * 89.99257 * 9 7 5 11 11 H 1.48499 * 109.47146 * 209.99518 * 9 7 5 12 12 H 1.48507 * 109.47082 * 329.99732 * 9 7 5 13 13 N 1.46897 * 109.47439 * 294.92416 * 3 2 1 14 14 C 1.46904 * 110.99898 * 154.13114 * 13 3 2 15 15 C 1.50701 * 109.46490 * 185.62245 * 14 13 3 16 16 C 1.38273 * 119.94236 * 90.00743 * 15 14 13 17 17 C 1.38150 * 120.08152 * 179.97438 * 16 15 14 18 18 C 1.38706 * 119.95233 * 359.97438 * 17 16 15 19 19 O 1.35927 * 120.05745 * 179.97438 * 18 17 16 20 20 C 1.42904 * 116.99872 * 359.97438 * 19 18 17 21 21 F 1.39892 * 109.47519 * 299.99914 * 20 19 18 22 22 F 1.39902 * 109.47016 * 60.00231 * 20 19 18 23 23 C 1.38811 * 119.88455 * 0.02562 * 18 17 16 24 24 Cl 1.73599 * 120.03957 * 179.97438 * 23 18 17 25 25 C 1.38251 * 119.94144 * 269.72471 * 15 14 13 26 26 H 1.09002 * 109.47109 * 300.49778 * 1 2 3 27 27 H 1.09000 * 109.47210 * 60.49354 * 1 2 3 28 28 H 1.08994 * 109.47414 * 180.49725 * 1 2 3 29 29 H 1.09002 * 109.46832 * 240.00255 * 2 1 3 30 30 H 1.08999 * 109.47097 * 120.00289 * 2 1 3 31 31 H 0.96996 * 119.99780 * 180.02562 * 8 7 5 32 32 H 1.00895 * 111.00150 * 278.08724 * 13 3 2 33 33 H 1.08991 * 109.47053 * 305.61778 * 14 13 3 34 34 H 1.08998 * 109.47079 * 65.62478 * 14 13 3 35 35 H 1.08002 * 119.96173 * 0.02562 * 16 15 14 36 36 H 1.08000 * 120.02194 * 180.02562 * 17 16 15 37 37 H 1.09002 * 109.46972 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.97509 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9819 0.8411 5 6 3.5418 1.4443 0.1257 6 1 4.1480 1.8885 -0.6498 7 6 4.1418 0.8788 1.2308 8 7 3.4034 0.3382 2.1754 9 14 6.0032 0.8817 1.3870 10 1 6.4391 2.1149 2.0902 11 1 6.4368 -0.3090 2.1612 12 1 6.6135 0.8416 0.0338 13 7 1.6530 2.0987 -1.2559 14 6 1.5540 3.5539 -1.0808 15 6 1.0235 4.1771 -2.3462 16 6 -0.3392 4.3374 -2.5179 17 6 -0.8286 4.9088 -3.6765 18 6 0.0481 5.3227 -4.6685 19 8 -0.4312 5.8847 -5.8096 20 6 -1.8496 6.0181 -5.9209 21 9 -2.4442 4.7541 -5.8460 22 9 -2.3258 6.8201 -4.8781 23 6 1.4157 5.1610 -4.4943 24 17 2.5166 5.6770 -5.7335 25 6 1.9003 4.5929 -3.3308 26 1 -0.3633 0.5216 0.8855 27 1 -0.3633 0.5061 -0.8944 28 1 -0.3634 -1.0275 0.0089 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8255 -0.0594 2.9530 32 1 2.2959 1.8668 -1.9982 33 1 0.8774 3.7753 -0.2554 34 1 2.5408 3.9614 -0.8611 35 1 -1.0217 4.0162 -1.7449 36 1 -1.8931 5.0339 -3.8095 37 1 -2.0971 6.4805 -6.8765 38 1 2.9645 4.4704 -3.1925 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184087788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:24 Heat of formation + Delta-G solvation = -135.897727 kcal Electronic energy + Delta-G solvation = -24291.502667 eV Core-core repulsion = 20216.191946 eV Total energy + Delta-G solvation = -4075.310720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.62821 -47.61561 -40.18085 -37.99635 -36.56923 -35.92733 -32.87360 -31.45486 -30.87201 -29.81602 -27.04605 -26.03899 -24.15399 -23.07581 -22.53453 -21.14866 -19.52691 -19.27239 -18.39015 -18.18962 -16.80778 -16.36338 -15.90270 -15.27014 -15.02562 -14.83318 -14.34885 -14.27937 -14.09805 -13.94627 -13.84356 -13.52359 -13.28558 -12.89227 -12.71923 -12.51332 -12.24994 -11.98492 -11.53936 -11.36141 -11.31716 -11.12422 -11.08761 -10.88114 -10.74072 -10.67292 -10.17210 -9.62396 -9.56544 -9.11300 -8.90739 -8.41306 -8.31328 -7.32727 -6.03413 -4.16605 1.13123 1.19272 2.07784 2.29183 3.17110 3.24809 3.32611 3.35199 3.54970 3.98907 4.33999 4.36780 4.64722 4.76831 4.99864 5.22470 5.29284 5.31891 5.50771 5.66908 5.95428 6.04470 6.16903 6.30175 6.37797 6.43889 6.50084 6.69276 6.71194 6.84938 7.09398 7.15635 7.39280 7.54767 7.74126 8.03970 8.08422 8.26964 8.58670 8.95224 9.51397 10.96837 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.003228 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.840827 B = 8673.129562 C = 9827.392019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.103 3.897 15 C -0.070 4.070 16 C -0.059 4.059 17 C -0.180 4.180 18 C 0.100 3.900 19 O -0.314 6.314 20 C 0.412 3.588 21 F -0.197 7.197 22 F -0.199 7.199 23 C -0.050 4.050 24 Cl -0.062 7.062 25 C -0.075 4.075 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.024 0.976 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.330 0.670 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.181 0.819 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 11.656 -14.865 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.312 5.312 14 C -0.027 4.027 15 C -0.071 4.071 16 C -0.078 4.078 17 C -0.199 4.199 18 C 0.056 3.944 19 O -0.231 6.231 20 C 0.321 3.679 21 F -0.179 7.179 22 F -0.181 7.181 23 C -0.077 4.077 24 Cl -0.034 7.034 25 C -0.094 4.094 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.197 0.803 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.295 11.545 -14.805 21.412 hybrid contribution 1.826 0.167 0.259 1.852 sum -8.468 11.712 -14.547 20.506 Atomic orbital electron populations 1.21703 0.99005 0.98413 1.00365 1.21492 0.92104 0.99116 1.01712 1.19176 0.92929 0.91297 0.85847 0.94893 1.21853 0.92686 1.38499 1.05632 0.92809 1.24926 0.97950 0.94885 0.95686 1.69874 1.34867 1.38117 1.09356 0.86656 0.85993 0.77565 0.78142 1.20739 1.21149 1.19963 1.60953 1.55207 1.04690 1.10379 1.20761 0.99401 0.90566 0.91966 1.20144 0.92880 0.97286 0.96835 1.20995 0.95292 0.95151 0.96340 1.21456 0.99507 1.04041 0.94862 1.18420 0.91669 0.97975 0.86313 1.86660 1.21634 1.76857 1.37980 1.23350 0.76876 0.76458 0.91168 1.93111 1.84014 1.43735 1.97048 1.93103 1.88287 1.73723 1.62961 1.20074 0.87246 1.07151 0.93238 1.98355 1.62318 1.89564 1.53113 1.20931 1.01076 0.96718 0.90683 0.94502 0.93311 0.95656 0.95073 0.89120 0.92835 0.85411 0.90746 0.94018 0.84605 0.84459 0.80281 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.79 37.16 0.36 -2.40 16 2 C -0.11 -2.47 5.45 -26.73 -0.15 -2.61 16 3 C 0.22 5.09 1.97 -68.87 -0.14 4.95 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.24 8.47 -34.44 -0.29 -14.53 16 6 H 0.05 1.39 7.73 -52.49 -0.41 0.98 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.41 11.29 55.43 0.63 -23.79 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -13.53 5.67 -109.22 -0.62 -14.14 16 14 C 0.10 1.78 5.64 -4.97 -0.03 1.75 16 15 C -0.07 -1.05 5.44 -104.60 -0.57 -1.62 16 16 C -0.06 -0.81 9.69 -39.60 -0.38 -1.20 16 17 C -0.18 -2.34 8.26 -39.44 -0.33 -2.66 16 18 C 0.10 1.33 6.48 -39.20 -0.25 1.08 16 19 O -0.31 -3.53 9.89 -19.51 -0.19 -3.72 16 20 C 0.41 3.26 5.98 101.05 0.60 3.86 16 21 F -0.20 -1.93 15.59 2.25 0.04 -1.89 16 22 F -0.20 -1.87 15.58 2.25 0.04 -1.83 16 23 C -0.05 -0.69 6.33 -39.36 -0.25 -0.94 16 24 Cl -0.06 -0.80 28.50 -51.86 -1.48 -2.28 16 25 C -0.07 -1.07 9.48 -39.57 -0.38 -1.44 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.94 7.77 -51.93 -0.40 0.54 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.33 6.58 8.45 -39.29 -0.33 6.25 16 33 H 0.07 1.29 7.86 -51.93 -0.41 0.88 16 34 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 35 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.14 1.61 5.10 -52.49 -0.27 1.35 16 37 H 0.18 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -28.27 341.26 -7.97 -36.24 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.62 Total: 4.61 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.88 Total: -14.04 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.01 Total: -37.93 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.19 Total: -3.72 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.48 Total: -2.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.27 -7.97 -36.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.653 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds