Wall clock time and date at job start Tue Mar 31 2020 12:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47300 * 54.92980 * 3 2 1 5 5 C 1.50701 * 109.47261 * 174.92406 * 3 2 1 6 6 H 1.07993 * 120.00375 * 119.99762 * 5 3 2 7 7 C 1.37882 * 120.00025 * 300.00670 * 5 3 2 8 8 N 1.31518 * 119.99769 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00231 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47602 * 89.99257 * 9 7 5 11 11 H 1.48499 * 109.47146 * 209.99518 * 9 7 5 12 12 H 1.48507 * 109.47082 * 329.99732 * 9 7 5 13 13 N 1.46897 * 109.47439 * 294.92416 * 3 2 1 14 14 C 1.46904 * 110.99898 * 154.13114 * 13 3 2 15 15 C 1.50701 * 109.46490 * 185.62245 * 14 13 3 16 16 C 1.38273 * 119.94236 * 90.00743 * 15 14 13 17 17 C 1.38150 * 120.08152 * 179.97438 * 16 15 14 18 18 C 1.38706 * 119.95233 * 359.97438 * 17 16 15 19 19 O 1.35927 * 120.05745 * 179.97438 * 18 17 16 20 20 C 1.42904 * 116.99872 * 359.97438 * 19 18 17 21 21 F 1.39892 * 109.47519 * 299.99914 * 20 19 18 22 22 F 1.39902 * 109.47016 * 60.00231 * 20 19 18 23 23 C 1.38811 * 119.88455 * 0.02562 * 18 17 16 24 24 Cl 1.73599 * 120.03957 * 179.97438 * 23 18 17 25 25 C 1.38251 * 119.94144 * 269.72471 * 15 14 13 26 26 H 1.09002 * 109.47109 * 300.49778 * 1 2 3 27 27 H 1.09000 * 109.47210 * 60.49354 * 1 2 3 28 28 H 1.08994 * 109.47414 * 180.49725 * 1 2 3 29 29 H 1.09002 * 109.46832 * 240.00255 * 2 1 3 30 30 H 1.08999 * 109.47097 * 120.00289 * 2 1 3 31 31 H 0.96996 * 119.99780 * 180.02562 * 8 7 5 32 32 H 1.00895 * 111.00150 * 278.08724 * 13 3 2 33 33 H 1.08991 * 109.47053 * 305.61778 * 14 13 3 34 34 H 1.08998 * 109.47079 * 65.62478 * 14 13 3 35 35 H 1.08002 * 119.96173 * 0.02562 * 16 15 14 36 36 H 1.08000 * 120.02194 * 180.02562 * 17 16 15 37 37 H 1.09002 * 109.46972 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.97509 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9819 0.8411 5 6 3.5418 1.4443 0.1257 6 1 4.1480 1.8885 -0.6498 7 6 4.1418 0.8788 1.2308 8 7 3.4034 0.3382 2.1754 9 14 6.0032 0.8817 1.3870 10 1 6.4391 2.1149 2.0902 11 1 6.4368 -0.3090 2.1612 12 1 6.6135 0.8416 0.0338 13 7 1.6530 2.0987 -1.2559 14 6 1.5540 3.5539 -1.0808 15 6 1.0235 4.1771 -2.3462 16 6 -0.3392 4.3374 -2.5179 17 6 -0.8286 4.9088 -3.6765 18 6 0.0481 5.3227 -4.6685 19 8 -0.4312 5.8847 -5.8096 20 6 -1.8496 6.0181 -5.9209 21 9 -2.4442 4.7541 -5.8460 22 9 -2.3258 6.8201 -4.8781 23 6 1.4157 5.1610 -4.4943 24 17 2.5166 5.6770 -5.7335 25 6 1.9003 4.5929 -3.3308 26 1 -0.3633 0.5216 0.8855 27 1 -0.3633 0.5061 -0.8944 28 1 -0.3634 -1.0275 0.0089 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8255 -0.0594 2.9530 32 1 2.2959 1.8668 -1.9982 33 1 0.8774 3.7753 -0.2554 34 1 2.5408 3.9614 -0.8611 35 1 -1.0217 4.0162 -1.7449 36 1 -1.8931 5.0339 -3.8095 37 1 -2.0971 6.4805 -6.8765 38 1 2.9645 4.4704 -3.1925 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184087788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:24 Heat of formation + Delta-G solvation = -151.504374 kcal Electronic energy + Delta-G solvation = -24292.179422 eV Core-core repulsion = 20216.191946 eV Total energy + Delta-G solvation = -4075.987475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.30611 -48.30142 -41.18002 -39.06469 -37.82046 -37.36737 -34.56663 -33.21072 -31.93810 -31.16721 -28.51869 -27.21650 -25.56437 -24.22350 -24.09027 -22.32824 -21.37570 -20.13101 -19.13869 -18.88364 -18.72965 -17.23823 -17.15309 -16.77432 -16.27755 -15.96794 -15.69173 -15.39290 -15.29774 -15.00985 -14.79971 -14.64662 -14.55881 -14.23678 -14.00782 -13.61701 -13.44084 -13.31772 -13.09468 -13.06995 -12.80495 -12.57758 -12.52194 -12.34679 -12.22143 -12.01419 -11.84915 -11.48665 -11.34660 -10.99965 -10.44424 -9.97876 -9.41834 -9.02839 -8.04283 -6.25885 0.05662 0.10982 1.04889 1.39187 1.41900 1.50147 1.53743 2.41063 2.45558 2.54698 3.16312 3.47984 3.58879 3.69696 3.73244 3.87032 4.02945 4.21237 4.23744 4.46401 4.62994 4.78786 4.80144 4.84589 4.93171 4.96374 5.06553 5.20259 5.36761 5.45132 5.52027 5.56026 5.65184 5.78963 5.82631 6.11596 6.21137 6.38052 6.79909 7.01536 7.45616 8.92377 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.003228 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.840827 B = 8673.129562 C = 9827.392019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.560 4.560 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.674 5.674 14 C 0.110 3.890 15 C -0.083 4.083 16 C -0.059 4.059 17 C -0.180 4.180 18 C 0.105 3.895 19 O -0.320 6.320 20 C 0.406 3.594 21 F -0.208 7.208 22 F -0.208 7.208 23 C -0.062 4.062 24 Cl -0.054 7.054 25 C -0.076 4.076 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.237 0.763 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 12.461 -16.543 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.599 4.599 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.302 5.302 14 C -0.020 4.020 15 C -0.084 4.084 16 C -0.078 4.078 17 C -0.199 4.199 18 C 0.060 3.940 19 O -0.237 6.237 20 C 0.317 3.683 21 F -0.190 7.190 22 F -0.189 7.189 23 C -0.089 4.089 24 Cl -0.026 7.026 25 C -0.095 4.095 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.253 0.747 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.948 12.364 -16.502 23.346 hybrid contribution 1.967 -0.016 0.701 2.088 sum -8.981 12.348 -15.801 21.972 Atomic orbital electron populations 1.21560 0.96407 0.99674 1.00608 1.21358 0.94413 0.98391 0.99958 1.18946 0.91630 0.91558 0.86511 0.97719 1.22182 0.94090 1.38073 1.05521 0.93031 1.25626 1.01846 0.94790 0.95583 1.70000 1.36320 1.38824 1.09747 0.85724 0.81343 0.77455 0.78096 1.20438 1.21011 1.19527 1.60870 1.54573 1.06254 1.08542 1.20657 0.98826 0.88997 0.93481 1.19841 0.93577 0.98829 0.96126 1.21107 0.94860 0.94857 0.96929 1.21585 1.00168 1.03694 0.94430 1.18543 0.91578 0.96995 0.86885 1.86676 1.23894 1.76290 1.36884 1.24320 0.75090 0.76066 0.92848 1.93090 1.84013 1.44757 1.97133 1.93085 1.88206 1.73843 1.63803 1.20133 0.87914 1.07484 0.93358 1.98353 1.62101 1.89464 1.52635 1.20938 1.01112 0.96653 0.90832 0.94899 0.92310 0.93882 0.95479 0.92090 0.92923 0.85390 0.91023 0.95308 0.83714 0.83158 0.74708 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.79 71.98 0.71 -4.23 16 2 C -0.10 -4.83 5.45 30.59 0.17 -4.66 16 3 C 0.22 10.69 1.97 44.17 0.09 10.78 16 4 H 0.00 0.26 7.70 -2.39 -0.02 0.24 16 5 C -0.56 -29.47 8.47 25.60 0.22 -29.25 16 6 H 0.05 2.68 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.17 5.29 84.66 0.45 1.62 16 8 N -0.91 -51.13 11.29 21.45 0.24 -50.89 16 9 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 N -0.67 -26.77 5.67 -499.47 -2.83 -29.60 16 14 C 0.11 3.83 5.64 85.56 0.48 4.32 16 15 C -0.08 -2.43 5.44 -19.85 -0.11 -2.54 16 16 C -0.06 -1.56 9.69 22.26 0.22 -1.34 16 17 C -0.18 -4.37 8.26 22.36 0.18 -4.19 16 18 C 0.10 2.59 6.48 22.52 0.15 2.74 16 19 O -0.32 -6.40 9.89 -92.73 -0.92 -7.32 16 20 C 0.41 5.20 5.98 113.37 0.68 5.87 16 21 F -0.21 -3.54 15.59 44.97 0.70 -2.84 16 22 F -0.21 -3.38 15.58 44.97 0.70 -2.68 16 23 C -0.06 -1.63 6.33 22.41 0.14 -1.49 16 24 Cl -0.05 -1.32 28.50 -2.72 -0.08 -1.40 16 25 C -0.08 -2.13 9.48 22.28 0.21 -1.92 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 2.18 7.77 -2.39 -0.02 2.17 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 3.25 5.95 -2.39 -0.01 3.24 16 31 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.33 13.17 8.45 -89.70 -0.76 12.41 16 33 H 0.07 2.52 7.86 -2.39 -0.02 2.50 16 34 H 0.03 1.07 8.06 -2.39 -0.02 1.05 16 35 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.15 3.22 5.10 -2.91 -0.01 3.20 16 37 H 0.24 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -60.57 341.26 3.76 -56.81 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.34 Total: 17.45 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 3.57 Total: -24.30 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.59 Total: -80.49 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.92 Total: -7.32 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.40 Total: -5.52 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -60.57 3.76 -56.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.696 kcal (2) G-P(sol) polarization free energy of solvation -60.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds