Wall clock time and date at job start Tue Mar 31 2020 13:29:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86797 * 120.00606 * 2 1
4 4 H 1.48494 * 109.47563 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.46875 * 299.99762 * 3 2 1
6 6 H 1.48501 * 109.47113 * 59.99364 * 3 2 1
7 7 C 1.38804 * 119.99701 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00124 * 180.02562 * 7 2 1
9 9 S 1.76199 * 119.99919 * 359.97438 * 7 2 1
10 10 C 1.80998 * 99.99903 * 179.97438 * 9 7 2
11 11 C 1.50697 * 109.47250 * 179.97438 * 10 9 7
12 12 O 1.21290 * 120.00001 * 0.02562 * 11 10 9
13 13 N 1.34781 * 120.00364 * 179.97438 * 11 10 9
14 14 C 1.47505 * 125.66566 * 0.02562 * 13 11 10
15 15 C 1.55096 * 104.93450 * 203.93811 * 14 13 11
16 16 C 1.54163 * 101.48556 * 323.96684 * 15 14 13
17 17 C 1.47268 * 125.67084 * 180.02562 * 13 11 10
18 18 O 1.42780 * 111.03570 * 274.30940 * 16 15 14
19 19 C 1.44196 * 104.69434 * 265.60026 * 18 16 15
20 20 C 1.51175 * 106.06825 * 332.90421 * 19 18 16
21 21 C 1.37915 * 132.62061 * 196.98838 * 20 19 18
22 22 C 1.38285 * 120.00101 * 180.08432 * 21 20 19
23 23 C 1.38261 * 119.98510 * 0.02562 * 22 21 20
24 24 C 1.38255 * 120.06121 * 359.97438 * 23 22 21
25 25 C 1.37997 * 120.05118 * 359.92001 * 24 23 22
26 26 H 0.97001 * 119.99566 * 0.02562 * 1 2 3
27 27 H 1.09004 * 109.46891 * 60.00285 * 10 9 7
28 28 H 1.09000 * 109.47741 * 300.00579 * 10 9 7
29 29 H 1.09001 * 110.35399 * 322.80353 * 14 13 11
30 30 H 1.09006 * 110.35198 * 84.97009 * 14 13 11
31 31 H 1.09006 * 111.02069 * 205.91258 * 15 14 13
32 32 H 1.09002 * 111.02033 * 82.02046 * 15 14 13
33 33 H 1.09000 * 109.92625 * 58.94370 * 17 13 11
34 34 H 1.09007 * 109.92650 * 297.62734 * 17 13 11
35 35 H 1.08993 * 110.13340 * 92.05551 * 19 18 16
36 36 H 1.09006 * 110.12870 * 213.75906 * 19 18 16
37 37 H 1.07991 * 120.00136 * 0.10935 * 21 20 19
38 38 H 1.08003 * 120.00569 * 180.02562 * 22 21 20
39 39 H 1.08001 * 119.96890 * 179.97438 * 23 22 21
40 40 H 1.08003 * 119.97212 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8918 2.3963 -1.2126
6 1 1.8916 2.3964 1.2124
7 6 2.0102 -1.2021 0.0005
8 1 3.0903 -1.2022 0.0010
9 16 1.1291 -2.7280 0.0019
10 6 2.5156 -3.8915 0.0013
11 6 1.9871 -5.3027 0.0030
12 8 0.7907 -5.5023 0.0040
13 7 2.8438 -6.3433 0.0024
14 6 4.3156 -6.2455 0.0007
15 6 4.8045 -7.5859 -0.6074
16 6 3.7672 -8.5761 -0.0417
17 6 2.4660 -7.7667 0.0033
18 8 4.1480 -9.0310 1.2570
19 6 4.8538 -10.2658 1.0197
20 6 4.2993 -10.8232 -0.2715
21 6 4.3467 -12.0770 -0.8440
22 6 3.7372 -12.3033 -2.0645
23 6 3.0808 -11.2723 -2.7108
24 6 3.0327 -10.0150 -2.1378
25 6 3.6383 -9.7875 -0.9189
26 1 -0.4849 0.8401 -0.0004
27 1 3.1249 -3.7310 0.8909
28 1 3.1237 -3.7319 -0.8891
29 1 4.6392 -5.4083 -0.6178
30 1 4.6891 -6.1306 1.0183
31 1 5.8084 -7.8299 -0.2597
32 1 4.7656 -7.5584 -1.6964
33 1 1.8588 -7.9904 -0.8738
34 1 1.9124 -8.0035 0.9120
35 1 5.9218 -10.0738 0.9174
36 1 4.6739 -10.9638 1.8374
37 1 4.8595 -12.8821 -0.3391
38 1 3.7740 -13.2853 -2.5127
39 1 2.6052 -11.4493 -3.6642
40 1 2.5191 -9.2108 -2.6437
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186931544.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:34
Heat of formation + Delta-G solvation = -33.697270 kcal
Electronic energy + Delta-G solvation = -23702.463582 eV
Core-core repulsion = 20187.857842 eV
Total energy + Delta-G solvation = -3514.605740 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.66770 -39.29950 -37.93098 -36.28864 -32.41876 -32.32722 -31.73122 -30.56676
-29.75776 -28.26869 -25.91542 -25.44562 -24.07953 -22.93957 -21.97589 -20.31415
-19.39622 -17.76291 -17.37686 -16.84831 -16.34185 -16.25902 -15.68415 -15.52777
-14.92848 -14.79018 -14.55011 -14.13340 -14.08205 -13.81782 -13.43629 -13.28911
-13.12464 -12.64090 -12.55974 -12.42938 -12.33086 -12.10119 -11.75815 -11.65952
-11.47153 -11.07631 -11.05901 -11.00042 -10.74381 -10.34594 -9.79297 -9.41708
-9.29019 -9.06057 -8.95213 -8.50727 -8.21069 -6.48604 -6.20351 -3.90744
0.80611 0.93525 2.87947 3.07782 3.22641 3.24870 3.27111 3.32185
3.43719 3.60368 3.79452 4.16399 4.21031 4.28485 4.32681 4.55433
4.65591 4.87743 4.95985 5.00646 5.05568 5.10133 5.12079 5.14879
5.26032 5.39497 5.44440 5.49806 5.52661 5.61129 5.62544 5.73559
5.82764 5.94427 5.96869 6.01660 6.06594 6.15762 6.35701 6.44055
6.54340 7.61200 7.66588 8.36931 8.56596 9.25003 10.87184
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.031780 B = 0.002532 C = 0.002467
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 880.852240 B =11056.532102 C =11346.184700
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.073 3.927
3 Si 0.919 3.081
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.533 4.533
8 H 0.073 0.927
9 S -0.061 6.061
10 C -0.146 4.146
11 C 0.549 3.451
12 O -0.515 6.515
13 N -0.625 5.625
14 C 0.105 3.895
15 C -0.139 4.139
16 C 0.137 3.863
17 C 0.122 3.878
18 O -0.336 6.336
19 C 0.088 3.912
20 C -0.129 4.129
21 C -0.096 4.096
22 C -0.113 4.113
23 C -0.114 4.114
24 C -0.086 4.086
25 C -0.110 4.110
26 H 0.268 0.732
27 H 0.090 0.910
28 H 0.089 0.911
29 H 0.083 0.917
30 H 0.074 0.926
31 H 0.091 0.909
32 H 0.088 0.912
33 H 0.081 0.919
34 H 0.080 0.920
35 H 0.080 0.920
36 H 0.099 0.901
37 H 0.125 0.875
38 H 0.128 0.872
39 H 0.130 0.870
40 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.594 -25.308 -3.210 28.907
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.136 4.136
3 Si 0.746 3.254
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.682 4.682
8 H 0.091 0.909
9 S 0.166 5.834
10 C -0.296 4.296
11 C 0.338 3.662
12 O -0.389 6.389
13 N -0.363 5.363
14 C -0.018 4.018
15 C -0.177 4.177
16 C 0.096 3.904
17 C -0.001 4.001
18 O -0.254 6.254
19 C 0.011 3.989
20 C -0.129 4.129
21 C -0.114 4.114
22 C -0.131 4.131
23 C -0.131 4.131
24 C -0.104 4.104
25 C -0.110 4.110
26 H 0.078 0.922
27 H 0.108 0.892
28 H 0.108 0.892
29 H 0.101 0.899
30 H 0.092 0.908
31 H 0.109 0.891
32 H 0.107 0.893
33 H 0.099 0.901
34 H 0.098 0.902
35 H 0.098 0.902
36 H 0.117 0.883
37 H 0.143 0.857
38 H 0.146 0.854
39 H 0.148 0.852
40 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 11.536 -25.297 -2.983 27.963
hybrid contribution 2.102 1.082 -0.160 2.370
sum 13.638 -24.215 -3.143 27.969
Atomic orbital electron populations
1.70031 1.05952 1.27326 1.46970 1.25000 0.95035 0.99040 0.94574
0.86108 0.79577 0.81868 0.77887 1.19617 1.20583 1.20563 1.22898
0.94926 0.91569 1.58782 0.90871 1.85411 1.04967 0.96347 1.96704
1.23506 1.06475 0.94791 1.04862 1.20040 0.85629 0.85358 0.75161
1.90714 1.14908 1.85109 1.48135 1.48553 1.06717 1.05165 1.75906
1.22320 0.80354 0.97687 1.01471 1.23122 0.98970 0.94156 1.01481
1.20789 0.95373 0.91511 0.82687 1.21744 0.94326 0.80533 1.03474
1.89071 1.74513 1.37311 1.24522 1.21855 0.96250 0.86143 0.94621
1.21120 0.99487 0.94599 0.97727 1.20369 1.00064 0.95216 0.95723
1.21170 0.97669 0.99370 0.94920 1.21163 0.99265 0.92554 1.00163
1.20494 0.98367 0.97644 0.93892 1.20482 0.99687 0.94775 0.96075
0.92245 0.89192 0.89245 0.89879 0.90780 0.89067 0.89297 0.90050
0.90153 0.90212 0.88290 0.85686 0.85376 0.85229 0.85382
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16
2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16
3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16
4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
7 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16
8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16
9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16
10 C -0.15 -3.07 5.17 36.00 0.19 -2.88 16
11 C 0.55 11.06 7.87 -10.98 -0.09 10.98 16
12 O -0.51 -12.35 16.19 5.55 0.09 -12.26 16
13 N -0.63 -9.74 3.34 -170.76 -0.57 -10.31 16
14 C 0.10 1.23 6.70 -2.38 -0.02 1.22 16
15 C -0.14 -1.33 6.22 -25.01 -0.16 -1.49 16
16 C 0.14 1.51 0.89 -91.29 -0.08 1.43 16
17 C 0.12 1.69 6.28 -3.46 -0.02 1.67 16
18 O -0.34 -3.85 11.12 -35.23 -0.39 -4.24 16
19 C 0.09 0.71 7.61 36.24 0.28 0.99 16
20 C -0.13 -1.13 6.33 -104.27 -0.66 -1.79 16
21 C -0.10 -0.68 10.04 -39.68 -0.40 -1.08 16
22 C -0.11 -0.76 10.05 -39.56 -0.40 -1.16 16
23 C -0.11 -0.84 10.05 -39.57 -0.40 -1.24 16
24 C -0.09 -0.78 9.52 -39.66 -0.38 -1.15 16
25 C -0.11 -1.09 5.10 -104.76 -0.53 -1.62 16
26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
27 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16
28 H 0.09 1.72 7.85 -51.92 -0.41 1.32 16
29 H 0.08 0.91 7.49 -51.93 -0.39 0.52 16
30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
32 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16
33 H 0.08 1.11 7.09 -51.93 -0.37 0.74 16
34 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16
35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16
36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
37 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16
38 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16
39 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16
40 H 0.13 1.09 7.71 -52.48 -0.40 0.68 16
LS Contribution 349.38 15.07 5.27 5.27
Total: -1.00 -35.50 349.38 -9.91 -45.41
By element:
Atomic # 1 Polarization: 3.65 SS G_CDS: -5.33 Total: -1.68 kcal
Atomic # 6 Polarization: -6.70 SS G_CDS: -2.47 Total: -9.17 kcal
Atomic # 7 Polarization: -36.11 SS G_CDS: 0.16 Total: -35.95 kcal
Atomic # 8 Polarization: -16.20 SS G_CDS: -0.30 Total: -16.50 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -35.50 -9.91 -45.41 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186931544.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.710 kcal
(2) G-P(sol) polarization free energy of solvation -35.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.697 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds